Wall clock time and date at job start Tue Mar 31 2020 17:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29947 * 126.28915 * 2 1 4 4 O 1.21295 * 110.25327 * 179.97438 * 3 2 1 5 5 C 1.33642 * 109.81388 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.55374 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47298 * 269.97212 * 6 5 4 8 8 N 1.30296 * 126.34283 * 90.02315 * 7 6 5 9 9 N 1.28533 * 110.04962 * 180.02562 * 8 7 6 10 10 C 1.31219 * 109.86189 * 359.97438 * 9 8 7 11 11 N 1.38584 * 126.47325 * 180.02562 * 10 9 8 12 12 C 1.46848 * 110.99898 * 65.41020 * 11 10 9 13 13 C 1.53033 * 109.51912 * 174.16049 * 12 11 10 14 14 C 1.53114 * 109.28222 * 59.18194 * 13 12 11 15 15 C 1.50699 * 109.52759 * 182.43640 * 14 13 12 16 16 H 1.08001 * 119.99952 * 119.67992 * 15 14 13 17 17 C 1.37871 * 120.00027 * 299.68339 * 15 14 13 18 18 N 1.31512 * 120.00427 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99977 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47323 * 90.00011 * 19 17 15 21 21 H 1.48499 * 109.47141 * 209.99705 * 19 17 15 22 22 H 1.48494 * 109.47282 * 329.99932 * 19 17 15 23 23 C 1.53126 * 109.15960 * 302.34425 * 14 13 12 24 24 C 1.46846 * 110.99505 * 301.20309 * 11 10 9 25 25 N 1.36452 * 107.04881 * 359.74472 * 10 9 8 26 26 C 1.46504 * 127.13390 * 180.26510 * 25 10 9 27 27 N 1.31133 * 106.89772 * 359.97438 * 5 4 3 28 28 H 1.08994 * 109.47445 * 269.99285 * 1 2 3 29 29 H 1.08995 * 109.47507 * 30.00258 * 1 2 3 30 30 H 1.09003 * 109.47135 * 149.99500 * 1 2 3 31 31 H 1.09009 * 109.46699 * 29.97378 * 6 5 4 32 32 H 1.08997 * 109.46948 * 149.96847 * 6 5 4 33 33 H 1.09001 * 109.46321 * 294.17958 * 12 11 10 34 34 H 1.08997 * 109.45964 * 54.14652 * 12 11 10 35 35 H 1.09004 * 109.50708 * 299.23608 * 13 12 11 36 36 H 1.09004 * 109.49777 * 179.12336 * 13 12 11 37 37 H 1.09008 * 109.52272 * 62.24313 * 14 13 12 38 38 H 0.96993 * 120.00672 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.49767 * 297.71311 * 23 14 13 40 40 H 1.08999 * 109.49920 * 177.59128 * 23 14 13 41 41 H 1.08999 * 109.46736 * 305.85093 * 24 11 10 42 42 H 1.08996 * 109.46783 * 65.82842 * 24 11 10 43 43 H 1.08998 * 109.46855 * 264.98987 * 26 25 10 44 44 H 1.09007 * 109.47210 * 24.98905 * 26 25 10 45 45 H 1.08998 * 109.47214 * 144.98575 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4418 0.7124 0.0005 5 6 3.5299 -0.6212 0.0003 6 6 4.7969 -1.4370 0.0014 7 6 5.2203 -1.7092 -1.4191 8 7 6.0057 -0.9665 -2.1466 9 7 6.1565 -1.4923 -3.3097 10 6 5.4702 -2.6080 -3.3871 11 7 5.3893 -3.4511 -4.4840 12 6 6.6928 -4.0610 -4.7762 13 6 6.5354 -5.0919 -5.8962 14 6 5.9829 -4.4006 -7.1457 15 6 5.7693 -5.4216 -8.2334 16 1 4.7811 -5.5791 -8.6396 17 6 6.8354 -6.1545 -8.7098 18 7 6.6491 -7.0459 -9.6586 19 14 8.5448 -5.8816 -8.0075 20 1 8.7563 -6.7904 -6.8523 21 1 9.5605 -6.1654 -9.0529 22 1 8.6764 -4.4721 -7.5591 23 6 4.6487 -3.7324 -6.8019 24 6 4.8608 -2.7408 -5.6556 25 7 4.8563 -2.7845 -2.1813 26 6 3.9849 -3.8940 -1.7865 27 7 2.3030 -1.0842 0.0002 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 5.5839 -0.8852 0.5157 32 1 4.6203 -2.3818 0.5153 33 1 7.3935 -3.2874 -5.0903 34 1 7.0725 -4.5528 -3.8806 35 1 5.8454 -5.8732 -5.5774 36 1 7.5058 -5.5332 -6.1235 37 1 6.6909 -3.6455 -7.4874 38 1 7.3990 -7.5618 -9.9936 39 1 3.9291 -4.4923 -6.4973 40 1 4.2712 -3.2024 -7.6764 41 1 3.9099 -2.2739 -5.3989 42 1 5.5700 -1.9736 -5.9657 43 1 2.9440 -3.6130 -1.9461 44 1 4.2204 -4.7725 -2.3873 45 1 4.1421 -4.1222 -0.7323 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772169561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:42 Heat of formation + Delta-G solvation = 162.499933 kcal Electronic energy + Delta-G solvation = -28626.989097 eV Core-core repulsion = 24684.904780 eV Total energy + Delta-G solvation = -3942.084316 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.98377 -43.14823 -38.70686 -36.54619 -35.38198 -34.83635 -33.92717 -31.96145 -31.08529 -30.46229 -29.52654 -28.04563 -27.60793 -25.89207 -24.13852 -22.89504 -22.52541 -22.39282 -21.05739 -20.89665 -18.90434 -18.55870 -17.90713 -17.33373 -16.82520 -16.63850 -16.28841 -15.47042 -15.01895 -14.65176 -14.51028 -14.35595 -14.01115 -13.72368 -13.68914 -13.43719 -13.21869 -13.17545 -12.98772 -12.93022 -12.47576 -12.39639 -12.04478 -11.93130 -11.80508 -11.66796 -11.48200 -11.02106 -10.71391 -10.69663 -10.34018 -10.30906 -10.22051 -10.02732 -9.75145 -9.29827 -9.10255 -9.04553 -8.61522 -8.54545 -6.09785 -4.09027 0.65938 1.41673 1.78056 2.09190 2.32715 2.73214 3.20366 3.23235 3.36587 3.37444 3.62339 3.73014 3.87198 4.32300 4.38195 4.43976 4.52797 4.77828 4.94016 4.97541 4.99040 5.03422 5.15059 5.18926 5.27687 5.29516 5.44299 5.45292 5.54970 5.58815 5.72975 5.74577 5.84239 5.94323 5.95655 6.19155 6.30558 6.34832 6.59262 6.66148 6.82165 7.00527 7.19722 7.31674 7.51739 7.73301 7.75210 8.49410 8.56114 8.94336 9.52662 11.03514 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.002626 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.105424 B =10659.654875 C =11116.947490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.168 3.832 3 N -0.381 5.381 4 O 0.091 5.909 5 C 0.186 3.814 6 C 0.071 3.929 7 C 0.150 3.850 8 N -0.264 5.264 9 N -0.309 5.309 10 C 0.371 3.629 11 N -0.464 5.464 12 C 0.067 3.933 13 C -0.116 4.116 14 C 0.012 3.988 15 C -0.511 4.511 16 H 0.074 0.926 17 C 0.070 3.930 18 N -0.901 5.901 19 Si 0.883 3.117 20 H -0.278 1.278 21 H -0.297 1.297 22 H -0.264 1.264 23 C -0.095 4.095 24 C 0.069 3.931 25 N -0.458 5.458 26 C 0.078 3.922 27 N -0.475 5.475 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.130 0.870 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.027 0.973 38 H 0.264 0.736 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.532 9.370 23.787 26.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 N -0.088 5.088 4 O 0.032 5.968 5 C -0.036 4.036 6 C 0.030 3.970 7 C -0.118 4.118 8 N -0.106 5.106 9 N -0.154 5.154 10 C 0.015 3.985 11 N -0.191 5.191 12 C -0.060 4.060 13 C -0.154 4.154 14 C -0.007 4.007 15 C -0.549 4.549 16 H 0.092 0.908 17 C -0.132 4.132 18 N -0.539 5.539 19 Si 0.713 3.287 20 H -0.205 1.205 21 H -0.224 1.224 22 H -0.189 1.189 23 C -0.133 4.133 24 C -0.057 4.057 25 N -0.150 5.150 26 C -0.065 4.065 27 N -0.210 5.210 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.158 0.842 32 H 0.148 0.852 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.102 0.898 44 H 0.122 0.878 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.547 10.467 23.369 26.995 hybrid contribution 0.756 -0.633 0.485 1.099 sum -7.792 9.834 23.854 26.952 Atomic orbital electron populations 1.20157 0.82731 1.04892 1.04355 1.25919 1.00671 0.83362 1.00521 1.74673 0.89349 1.23880 1.20918 1.85341 1.22277 1.24309 1.64903 1.28307 0.96303 0.82588 0.96396 1.18232 0.89580 0.99728 0.89488 1.23803 1.02748 0.88753 0.96487 1.74046 1.14412 1.23381 0.98808 1.74751 1.20874 1.07392 1.12348 1.22686 0.94741 0.93521 0.87512 1.58876 1.28557 1.29151 1.02523 1.22312 0.86316 0.97705 0.99622 1.22093 1.01079 0.97266 0.94923 1.19220 0.92945 0.95749 0.92817 1.21002 0.96637 1.19179 1.18057 0.90750 1.25019 0.98774 0.94740 0.94654 1.69889 1.31685 1.24217 1.28122 0.86913 0.84617 0.79243 0.77935 1.20544 1.22416 1.18930 1.21547 1.00038 0.97088 0.94584 1.22287 0.98634 0.96165 0.88636 1.46218 1.37303 1.19976 1.11483 1.22120 0.93926 0.88273 1.02161 1.71882 0.99462 1.29577 1.20044 0.89193 0.89408 0.88913 0.84227 0.85219 0.93356 0.91810 0.90984 0.92579 0.95473 0.92658 0.91575 0.91427 0.91830 0.93175 0.89805 0.87845 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 36.00 0.38 -0.01 16 2 C 0.17 1.69 8.22 -156.37 -1.28 0.41 16 3 N -0.38 -4.46 12.16 30.90 0.38 -4.08 16 4 O 0.09 1.02 11.31 18.10 0.20 1.22 16 5 C 0.19 1.75 7.75 -13.06 -0.10 1.64 16 6 C 0.07 0.48 6.22 -29.04 -0.18 0.30 16 7 C 0.15 1.74 7.30 -154.02 -1.12 0.62 16 8 N -0.26 -4.08 12.18 32.99 0.40 -3.68 16 9 N -0.31 -5.39 12.17 30.32 0.37 -5.02 16 10 C 0.37 5.81 6.43 -318.87 -2.05 3.76 16 11 N -0.46 -7.59 4.64 -174.55 -0.81 -8.40 16 12 C 0.07 1.17 5.40 -3.84 -0.02 1.15 16 13 C -0.12 -2.35 4.84 -26.65 -0.13 -2.48 16 14 C 0.01 0.26 1.75 -91.65 -0.16 0.10 16 15 C -0.51 -13.78 9.14 -34.44 -0.31 -14.10 16 16 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 17 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 18 N -0.90 -27.04 13.96 55.43 0.77 -26.27 16 19 Si 0.88 21.39 24.37 -169.99 -4.14 17.25 16 20 H -0.28 -6.50 6.89 56.52 0.39 -6.11 16 21 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.26 -6.17 6.53 56.52 0.37 -5.80 16 23 C -0.09 -1.78 5.32 -26.64 -0.14 -1.93 16 24 C 0.07 1.17 5.35 -3.83 -0.02 1.15 16 25 N -0.46 -5.57 3.21 -121.46 -0.39 -5.96 16 26 C 0.08 0.65 11.01 59.85 0.66 1.31 16 27 N -0.47 -4.78 11.55 -9.87 -0.11 -4.89 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.14 0.61 8.14 -51.92 -0.42 0.19 16 32 H 0.13 0.49 7.38 -51.93 -0.38 0.10 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.06 1.21 3.38 -51.93 -0.18 1.04 16 37 H 0.03 0.64 7.19 -51.92 -0.37 0.26 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 42 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.10 0.91 8.11 -51.93 -0.42 0.49 16 45 H 0.09 0.45 7.41 -51.93 -0.38 0.07 16 LS Contribution 368.14 15.07 5.55 5.55 Total: -1.00 -34.35 368.14 -8.78 -43.13 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -6.41 Total: -2.63 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -4.59 Total: -6.21 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.61 Total: -58.30 kcal Atomic # 8 Polarization: 1.02 SS G_CDS: 0.20 Total: 1.22 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.14 Total: 17.25 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.35 -8.78 -43.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772169561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 205.633 kcal (2) G-P(sol) polarization free energy of solvation -34.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds