Wall clock time and date at job start Tue Mar 31 2020 17:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29947 * 126.28915 * 2 1 4 4 O 1.21295 * 110.25327 * 179.97438 * 3 2 1 5 5 C 1.33642 * 109.81388 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.55374 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47298 * 269.97212 * 6 5 4 8 8 N 1.30296 * 126.34283 * 90.02315 * 7 6 5 9 9 N 1.28533 * 110.04962 * 180.02562 * 8 7 6 10 10 C 1.31219 * 109.86189 * 359.97438 * 9 8 7 11 11 N 1.38584 * 126.47325 * 180.02562 * 10 9 8 12 12 C 1.46848 * 110.99898 * 65.41020 * 11 10 9 13 13 C 1.53033 * 109.51912 * 174.16049 * 12 11 10 14 14 C 1.53114 * 109.28222 * 59.18194 * 13 12 11 15 15 C 1.50699 * 109.52759 * 182.43640 * 14 13 12 16 16 H 1.08001 * 119.99952 * 119.67992 * 15 14 13 17 17 C 1.37871 * 120.00027 * 299.68339 * 15 14 13 18 18 N 1.31512 * 120.00427 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99977 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47323 * 90.00011 * 19 17 15 21 21 H 1.48499 * 109.47141 * 209.99705 * 19 17 15 22 22 H 1.48494 * 109.47282 * 329.99932 * 19 17 15 23 23 C 1.53126 * 109.15960 * 302.34425 * 14 13 12 24 24 C 1.46846 * 110.99505 * 301.20309 * 11 10 9 25 25 N 1.36452 * 107.04881 * 359.74472 * 10 9 8 26 26 C 1.46504 * 127.13390 * 180.26510 * 25 10 9 27 27 N 1.31133 * 106.89772 * 359.97438 * 5 4 3 28 28 H 1.08994 * 109.47445 * 269.99285 * 1 2 3 29 29 H 1.08995 * 109.47507 * 30.00258 * 1 2 3 30 30 H 1.09003 * 109.47135 * 149.99500 * 1 2 3 31 31 H 1.09009 * 109.46699 * 29.97378 * 6 5 4 32 32 H 1.08997 * 109.46948 * 149.96847 * 6 5 4 33 33 H 1.09001 * 109.46321 * 294.17958 * 12 11 10 34 34 H 1.08997 * 109.45964 * 54.14652 * 12 11 10 35 35 H 1.09004 * 109.50708 * 299.23608 * 13 12 11 36 36 H 1.09004 * 109.49777 * 179.12336 * 13 12 11 37 37 H 1.09008 * 109.52272 * 62.24313 * 14 13 12 38 38 H 0.96993 * 120.00672 * 180.02562 * 18 17 15 39 39 H 1.08996 * 109.49767 * 297.71311 * 23 14 13 40 40 H 1.08999 * 109.49920 * 177.59128 * 23 14 13 41 41 H 1.08999 * 109.46736 * 305.85093 * 24 11 10 42 42 H 1.08996 * 109.46783 * 65.82842 * 24 11 10 43 43 H 1.08998 * 109.46855 * 264.98987 * 26 25 10 44 44 H 1.09007 * 109.47210 * 24.98905 * 26 25 10 45 45 H 1.08998 * 109.47214 * 144.98575 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4418 0.7124 0.0005 5 6 3.5299 -0.6212 0.0003 6 6 4.7969 -1.4370 0.0014 7 6 5.2203 -1.7092 -1.4191 8 7 6.0057 -0.9665 -2.1466 9 7 6.1565 -1.4923 -3.3097 10 6 5.4702 -2.6080 -3.3871 11 7 5.3893 -3.4511 -4.4840 12 6 6.6928 -4.0610 -4.7762 13 6 6.5354 -5.0919 -5.8962 14 6 5.9829 -4.4006 -7.1457 15 6 5.7693 -5.4216 -8.2334 16 1 4.7811 -5.5791 -8.6396 17 6 6.8354 -6.1545 -8.7098 18 7 6.6491 -7.0459 -9.6586 19 14 8.5448 -5.8816 -8.0075 20 1 8.7563 -6.7904 -6.8523 21 1 9.5605 -6.1654 -9.0529 22 1 8.6764 -4.4721 -7.5591 23 6 4.6487 -3.7324 -6.8019 24 6 4.8608 -2.7408 -5.6556 25 7 4.8563 -2.7845 -2.1813 26 6 3.9849 -3.8940 -1.7865 27 7 2.3030 -1.0842 0.0002 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 5.5839 -0.8852 0.5157 32 1 4.6203 -2.3818 0.5153 33 1 7.3935 -3.2874 -5.0903 34 1 7.0725 -4.5528 -3.8806 35 1 5.8454 -5.8732 -5.5774 36 1 7.5058 -5.5332 -6.1235 37 1 6.6909 -3.6455 -7.4874 38 1 7.3990 -7.5618 -9.9936 39 1 3.9291 -4.4923 -6.4973 40 1 4.2712 -3.2024 -7.6764 41 1 3.9099 -2.2739 -5.3989 42 1 5.5700 -1.9736 -5.9657 43 1 2.9440 -3.6130 -1.9461 44 1 4.2204 -4.7725 -2.3873 45 1 4.1421 -4.1222 -0.7323 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772169561.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:39 Heat of formation + Delta-G solvation = 139.122933 kcal Electronic energy + Delta-G solvation = -28628.002800 eV Core-core repulsion = 24684.904780 eV Total energy + Delta-G solvation = -3943.098019 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.82 seconds Orbital eigenvalues (eV) -46.72324 -44.18695 -40.14197 -37.26342 -36.24583 -36.14694 -35.10686 -33.72374 -32.07656 -31.96204 -30.15833 -29.15989 -28.38332 -27.53940 -24.88182 -24.42419 -24.02636 -23.22107 -22.27668 -21.82858 -20.47067 -19.33732 -18.84488 -18.70682 -18.39444 -17.64128 -17.36781 -16.50262 -16.27658 -15.98586 -15.52613 -15.22330 -15.13985 -14.87896 -14.78931 -14.50015 -14.41250 -14.18966 -14.00213 -13.84746 -13.64580 -13.51134 -13.41254 -13.06602 -12.83962 -12.80591 -12.44882 -12.29089 -12.21496 -12.17546 -11.80578 -11.75672 -11.47295 -11.19177 -11.07860 -11.03068 -10.97447 -10.65720 -10.28334 -9.92205 -8.27886 -6.31025 -0.07987 0.46909 1.01861 1.18849 1.29844 1.38185 1.44864 1.47108 1.86909 2.33377 2.55874 2.61423 2.99869 3.07308 3.09120 3.65210 3.76640 3.83095 3.87628 3.97991 4.10573 4.24249 4.26921 4.33916 4.39656 4.42461 4.44635 4.48250 4.55530 4.59312 4.68765 4.69098 4.72073 4.78156 4.81346 4.92054 4.92368 5.02592 5.05641 5.14635 5.44582 5.46642 5.65115 5.67877 5.75926 6.15806 6.33239 6.76021 7.03114 7.34376 7.50221 8.88883 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.002626 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.105424 B =10659.654875 C =11116.947490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.163 3.837 3 N -0.409 5.409 4 O 0.073 5.927 5 C 0.189 3.811 6 C 0.073 3.927 7 C 0.175 3.825 8 N -0.302 5.302 9 N -0.344 5.344 10 C 0.353 3.647 11 N -0.457 5.457 12 C 0.077 3.923 13 C -0.109 4.109 14 C 0.010 3.990 15 C -0.512 4.512 16 H 0.037 0.963 17 C 0.014 3.986 18 N -0.950 5.950 19 Si 0.942 3.058 20 H -0.260 1.260 21 H -0.302 1.302 22 H -0.252 1.252 23 C -0.086 4.086 24 C 0.080 3.920 25 N -0.452 5.452 26 C 0.071 3.929 27 N -0.482 5.482 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.168 0.832 32 H 0.171 0.829 33 H 0.036 0.964 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.017 0.983 38 H 0.265 0.735 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.039 0.961 43 H 0.087 0.913 44 H 0.099 0.901 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.730 9.539 27.347 30.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.109 4.109 3 N -0.120 5.120 4 O 0.017 5.983 5 C -0.032 4.032 6 C 0.032 3.968 7 C -0.094 4.094 8 N -0.144 5.144 9 N -0.189 5.189 10 C -0.004 4.004 11 N -0.183 5.183 12 C -0.050 4.050 13 C -0.147 4.147 14 C -0.009 4.009 15 C -0.550 4.550 16 H 0.056 0.944 17 C -0.183 4.183 18 N -0.590 5.590 19 Si 0.769 3.231 20 H -0.185 1.185 21 H -0.230 1.230 22 H -0.176 1.176 23 C -0.124 4.124 24 C -0.047 4.047 25 N -0.143 5.143 26 C -0.070 4.070 27 N -0.217 5.217 28 H 0.127 0.873 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.186 0.814 32 H 0.188 0.812 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.057 0.943 43 H 0.106 0.894 44 H 0.117 0.883 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.751 10.639 26.961 30.276 hybrid contribution 0.666 -0.672 -0.596 1.118 sum -8.085 9.966 26.365 29.323 Atomic orbital electron populations 1.20355 0.80478 1.05572 1.05792 1.26621 1.02111 0.83042 0.99168 1.74681 0.89751 1.24977 1.22575 1.85306 1.22264 1.25243 1.65452 1.28744 0.96951 0.82181 0.95372 1.18713 0.89326 1.01788 0.86937 1.24560 1.00211 0.87235 0.97437 1.73978 1.16773 1.24755 0.98880 1.74641 1.22089 1.08380 1.13762 1.22499 0.96191 0.93521 0.88240 1.58789 1.27681 1.29255 1.02560 1.22123 0.86861 0.96668 0.99327 1.21890 1.00221 0.97815 0.94780 1.19179 0.94749 0.94499 0.92504 1.21303 0.94998 1.19756 1.18918 0.94425 1.25827 1.02965 0.94524 0.95015 1.70036 1.32975 1.25883 1.30123 0.85941 0.79404 0.80138 0.77567 1.18541 1.22967 1.17590 1.21397 0.98060 0.97356 0.95596 1.22093 0.99177 0.95099 0.88291 1.46418 1.36861 1.20783 1.10212 1.22451 0.93327 0.86790 1.04462 1.71909 0.99710 1.29614 1.20476 0.87291 0.88945 0.87959 0.81436 0.81164 0.94530 0.89557 0.90928 0.93586 0.96489 0.92628 0.91602 0.91588 0.90308 0.94273 0.89442 0.88263 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.65 10.51 71.23 0.75 0.10 16 2 C 0.16 2.97 8.22 138.46 1.14 4.11 16 3 N -0.41 -9.09 12.16 -60.32 -0.73 -9.83 16 4 O 0.07 1.53 11.31 74.85 0.85 2.38 16 5 C 0.19 3.02 7.75 88.38 0.68 3.71 16 6 C 0.07 0.70 6.22 29.10 0.18 0.88 16 7 C 0.17 3.53 7.30 137.64 1.01 4.53 16 8 N -0.30 -8.82 12.18 -49.54 -0.60 -9.43 16 9 N -0.34 -11.59 12.17 -58.00 -0.71 -12.30 16 10 C 0.35 10.34 6.43 260.11 1.67 12.02 16 11 N -0.46 -14.13 4.64 -706.15 -3.28 -17.41 16 12 C 0.08 2.56 5.40 86.32 0.47 3.03 16 13 C -0.11 -4.30 4.84 30.64 0.15 -4.16 16 14 C 0.01 0.43 1.75 -11.46 -0.02 0.41 16 15 C -0.51 -28.33 9.14 25.60 0.23 -28.10 16 16 H 0.04 2.30 7.99 -2.91 -0.02 2.27 16 17 C 0.01 0.78 5.45 84.65 0.46 1.24 16 18 N -0.95 -58.69 13.96 21.44 0.30 -58.39 16 19 Si 0.94 44.26 24.37 68.60 1.67 45.94 16 20 H -0.26 -11.35 6.89 99.48 0.69 -10.67 16 21 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 22 H -0.25 -11.19 6.53 99.48 0.65 -10.55 16 23 C -0.09 -3.23 5.32 30.65 0.16 -3.07 16 24 C 0.08 2.63 5.35 86.33 0.46 3.09 16 25 N -0.45 -9.58 3.21 -538.18 -1.73 -11.30 16 26 C 0.07 0.90 11.01 127.77 1.41 2.30 16 27 N -0.48 -8.35 11.55 -303.20 -3.50 -11.85 16 28 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.83 16 30 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.17 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.17 0.28 7.38 -2.39 -0.02 0.26 16 33 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 2.50 8.10 -2.39 -0.02 2.48 16 35 H 0.07 2.83 8.14 -2.39 -0.02 2.82 16 36 H 0.05 1.91 3.38 -2.39 -0.01 1.90 16 37 H 0.02 0.80 7.19 -2.38 -0.02 0.78 16 38 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.08 2.36 8.10 -2.39 -0.02 2.34 16 42 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.10 1.42 8.11 -2.38 -0.02 1.40 16 45 H 0.13 0.61 7.41 -2.39 -0.02 0.60 16 Total: -1.00 -77.79 368.14 1.95 -75.84 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: 0.94 Total: 6.25 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 8.75 Total: 0.10 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -10.25 Total: -130.50 kcal Atomic # 8 Polarization: 1.53 SS G_CDS: 0.85 Total: 2.38 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.67 Total: 45.94 kcal Total: -77.79 1.95 -75.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772169561.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.963 kcal (2) G-P(sol) polarization free energy of solvation -77.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.82 seconds