Wall clock time and date at job start Tue Mar 31 2020 17:52:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30921 * 126.40709 * 2 1 4 4 C 1.35369 * 105.57689 * 180.02562 * 3 2 1 5 5 C 1.47864 * 126.44667 * 180.02562 * 4 3 2 6 6 N 1.31256 * 126.45950 * 0.02562 * 5 4 3 7 7 N 1.28519 * 109.90889 * 179.97438 * 6 5 4 8 8 C 1.31522 * 110.05344 * 0.02562 * 7 6 5 9 9 N 1.38255 * 126.36355 * 179.97438 * 8 7 6 10 10 C 1.46900 * 111.00106 * 57.46563 * 9 8 7 11 11 C 1.46897 * 110.99991 * 293.51027 * 9 8 7 12 12 H 1.09005 * 109.47199 * 309.99789 * 11 9 8 13 13 C 1.52996 * 109.47164 * 70.00477 * 11 9 8 14 14 C 1.50702 * 109.47094 * 190.00039 * 11 9 8 15 15 H 1.08004 * 119.99918 * 0.02562 * 14 11 9 16 16 C 1.37877 * 119.99849 * 179.97438 * 14 11 9 17 17 N 1.31509 * 120.00211 * 0.02562 * 16 14 11 18 18 Si 1.86805 * 119.99697 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47241 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47189 * 120.00333 * 18 16 14 21 21 H 1.48499 * 109.46881 * 240.00132 * 18 16 14 22 22 N 1.36304 * 107.26748 * 359.77092 * 8 7 6 23 23 C 1.46497 * 127.14840 * 180.22937 * 22 8 7 24 24 C 1.53002 * 109.47342 * 274.97900 * 23 22 8 25 25 C 1.53001 * 117.49892 * 243.62613 * 24 23 22 26 26 C 1.52994 * 117.50099 * 175.00456 * 24 23 22 27 27 N 1.30990 * 107.11408 * 0.02562 * 4 3 2 28 28 O 1.21283 * 110.05340 * 0.02562 * 27 4 3 29 29 H 1.09007 * 109.47155 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47527 * 299.99443 * 1 2 3 31 31 H 1.09005 * 109.47440 * 59.99803 * 1 2 3 32 32 H 1.09001 * 109.46837 * 65.52216 * 10 9 8 33 33 H 1.09001 * 109.46992 * 185.51710 * 10 9 8 34 34 H 1.08996 * 109.46834 * 305.52142 * 10 9 8 35 35 H 1.08991 * 109.47616 * 59.99458 * 13 11 9 36 36 H 1.09001 * 109.46935 * 180.02562 * 13 11 9 37 37 H 1.09000 * 109.46936 * 299.99325 * 13 11 9 38 38 H 0.97003 * 120.00318 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.47795 * 34.98084 * 23 22 8 40 40 H 1.09001 * 109.47187 * 154.97834 * 23 22 8 41 41 H 1.08993 * 115.54869 * 29.32935 * 24 23 22 42 42 H 1.09001 * 117.49974 * 359.97438 * 25 24 23 43 43 H 1.08995 * 117.50002 * 145.01303 * 25 24 23 44 44 H 1.09001 * 117.49774 * 214.98238 * 26 24 23 45 45 H 1.09008 * 117.50016 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2840 1.0537 0.0000 4 6 3.5492 0.5723 -0.0006 5 6 4.7932 1.3716 -0.0003 6 7 4.8788 2.6814 0.0011 7 7 6.1131 3.0394 0.0014 8 6 6.8903 1.9784 -0.0002 9 7 8.2729 1.9751 -0.0009 10 6 8.8017 2.7100 1.1560 11 6 8.8000 2.5224 -1.2580 12 1 8.3120 2.0324 -2.1006 13 6 8.5259 4.0265 -1.3141 14 6 10.2857 2.2797 -1.3277 15 1 10.7881 1.7695 -0.5191 16 6 11.0036 2.7081 -2.4242 17 7 10.3918 3.3289 -3.4090 18 14 12.8451 2.4066 -2.5108 19 1 13.2883 1.6945 -1.2853 20 1 13.1556 1.5793 -3.7043 21 1 13.5553 3.7068 -2.6113 22 7 6.0795 0.8828 0.0035 23 6 6.4917 -0.5230 0.0081 24 6 6.7552 -0.9819 -1.4275 25 6 5.8578 -2.0847 -1.9926 26 6 7.3111 -2.3932 -1.6273 27 7 3.4643 -0.7348 -0.0015 28 8 2.3005 -1.0760 -0.0020 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 8.5335 2.1855 2.0731 33 1 9.8870 2.7760 1.0793 34 1 8.3769 3.7136 1.1739 35 1 9.0139 4.5165 -0.4716 36 1 8.9167 4.4325 -2.2471 37 1 7.4513 4.2021 -1.2638 38 1 10.8969 3.6306 -4.1802 39 1 7.4021 -0.6328 0.5975 40 1 5.7005 -1.1323 0.4448 41 1 7.0930 -0.2061 -2.1145 42 1 5.0799 -2.4836 -1.3415 43 1 5.6048 -2.0344 -3.0516 44 1 8.0144 -2.5459 -2.4459 45 1 7.4895 -2.9948 -0.7359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772424851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:44 Heat of formation + Delta-G solvation = 201.059122 kcal Electronic energy + Delta-G solvation = -29452.467954 eV Core-core repulsion = 25512.055690 eV Total energy + Delta-G solvation = -3940.412265 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 2.97 seconds Orbital eigenvalues (eV) -45.77320 -42.63803 -37.63831 -37.37839 -36.11657 -34.37905 -33.67178 -32.83598 -29.92745 -29.12264 -28.65087 -27.57977 -25.53881 -25.36060 -24.84810 -23.03522 -22.36210 -21.59915 -21.22767 -20.69493 -19.36158 -18.43341 -17.79903 -17.06494 -16.45423 -15.95384 -15.68400 -15.41575 -14.90652 -14.76084 -14.59190 -14.15825 -13.81380 -13.67806 -13.50528 -13.09329 -13.01350 -12.45243 -12.38462 -12.05848 -11.85505 -11.63564 -11.50981 -11.41257 -11.30408 -11.26761 -10.98262 -10.82010 -10.61103 -10.50254 -10.44987 -10.41665 -10.13876 -10.05365 -9.93925 -9.77479 -8.96024 -8.57540 -8.48188 -7.83414 -6.10185 -4.16527 0.70913 1.44035 2.20736 2.47502 2.54841 3.23568 3.24828 3.28614 3.33148 3.36584 3.60050 3.82161 4.27324 4.49783 4.58420 4.70764 4.81635 4.88323 4.92561 5.03531 5.08808 5.13227 5.22029 5.35378 5.44471 5.51473 5.53119 5.67482 5.73710 5.76069 5.91016 6.02108 6.14620 6.19182 6.25906 6.31687 6.53486 6.72618 6.83499 6.99682 7.13134 7.40952 7.57580 7.71018 7.87170 7.88514 8.20774 8.38017 8.86659 8.95233 9.48382 10.96534 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.017227 B = 0.003546 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.989071 B = 7895.364006 C = 8794.080447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.180 3.820 3 N -0.447 5.447 4 C 0.274 3.726 5 C 0.210 3.790 6 N -0.227 5.227 7 N -0.305 5.305 8 C 0.403 3.597 9 N -0.470 5.470 10 C 0.043 3.957 11 C 0.227 3.773 12 H 0.036 0.964 13 C -0.176 4.176 14 C -0.506 4.506 15 H 0.067 0.933 16 C 0.062 3.938 17 N -0.888 5.888 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.447 5.447 23 C 0.145 3.855 24 C -0.166 4.166 25 C -0.177 4.177 26 C -0.160 4.160 27 N -0.370 5.370 28 O 0.083 5.917 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.105 0.895 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.043 0.957 35 H 0.033 0.967 36 H 0.088 0.912 37 H 0.036 0.964 38 H 0.262 0.738 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.280 -11.794 6.759 21.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.040 4.040 3 N -0.181 5.181 4 C 0.003 3.997 5 C -0.055 4.055 6 N -0.074 5.074 7 N -0.152 5.152 8 C 0.048 3.952 9 N -0.196 5.196 10 C -0.104 4.104 11 C 0.123 3.877 12 H 0.054 0.946 13 C -0.236 4.236 14 C -0.544 4.544 15 H 0.085 0.915 16 C -0.140 4.140 17 N -0.526 5.526 18 Si 0.728 3.272 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.210 1.210 22 N -0.141 5.141 23 C 0.022 3.978 24 C -0.185 4.185 25 C -0.214 4.214 26 C -0.198 4.198 27 N -0.079 5.079 28 O 0.022 5.978 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.064 0.936 33 H 0.111 0.889 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.106 0.894 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.133 0.867 42 H 0.116 0.884 43 H 0.110 0.890 44 H 0.118 0.882 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.681 -10.891 6.628 20.210 hybrid contribution 1.109 -0.723 -0.379 1.377 sum -14.572 -11.614 6.249 19.654 Atomic orbital electron populations 1.20423 0.79782 1.05638 1.05985 1.28888 0.99022 0.80200 0.95933 1.72086 0.98837 1.27916 1.19268 1.21665 0.90287 0.86148 1.01647 1.19958 0.81312 0.90802 1.13438 1.74424 1.13047 1.06208 1.13674 1.75010 0.95757 1.23185 1.21263 1.22924 0.92560 0.81815 0.97942 1.59386 0.95577 1.56615 1.08041 1.22294 1.02136 0.96180 0.89819 1.19425 0.95162 0.90914 0.82178 0.94650 1.22477 0.98743 0.99173 1.03167 1.21005 0.91006 1.37542 1.04869 0.91516 1.24906 0.98711 0.94935 0.95432 1.69916 1.35761 1.38758 1.08201 0.86405 0.84835 0.77912 0.78049 1.19629 1.21053 1.20987 1.46293 1.05039 1.08825 1.53895 1.21525 1.02303 0.76848 0.97085 1.22504 1.05652 0.93616 0.96752 1.23083 0.93885 1.02726 1.01716 1.22893 0.96542 0.96834 1.03537 1.74985 0.97321 1.14050 1.21544 1.85281 1.11159 1.35751 1.65658 0.88368 0.87647 0.87628 0.93556 0.88865 0.93865 0.94770 0.89359 0.94531 0.92809 0.87475 0.88496 0.86715 0.88376 0.89046 0.88179 0.88604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.23 10.51 36.01 0.38 0.15 16 2 C 0.18 1.77 8.49 -12.98 -0.11 1.66 16 3 N -0.45 -6.49 11.58 -9.88 -0.11 -6.60 16 4 C 0.27 4.46 8.03 -156.04 -1.25 3.21 16 5 C 0.21 4.02 8.00 -153.73 -1.23 2.79 16 6 N -0.23 -4.92 12.23 32.60 0.40 -4.52 16 7 N -0.31 -6.90 9.81 30.27 0.30 -6.61 16 8 C 0.40 8.54 6.24 -319.17 -1.99 6.55 16 9 N -0.47 -10.15 4.72 -176.15 -0.83 -10.99 16 10 C 0.04 0.84 8.53 60.06 0.51 1.35 16 11 C 0.23 5.68 2.28 -68.87 -0.16 5.52 16 12 H 0.04 1.00 8.05 -51.93 -0.42 0.58 16 13 C -0.18 -4.44 8.17 37.16 0.30 -4.14 16 14 C -0.51 -13.23 7.83 -34.44 -0.27 -13.50 16 15 H 0.07 1.72 7.17 -52.48 -0.38 1.34 16 16 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 17 N -0.89 -24.89 11.32 55.43 0.63 -24.26 16 18 Si 0.90 20.68 29.54 -169.99 -5.02 15.66 16 19 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 22 N -0.45 -8.37 2.83 -114.72 -0.32 -8.69 16 23 C 0.15 2.23 6.20 -4.04 -0.03 2.20 16 24 C -0.17 -2.55 6.01 -90.62 -0.54 -3.10 16 25 C -0.18 -2.26 10.18 -26.73 -0.27 -2.53 16 26 C -0.16 -2.00 10.25 -26.74 -0.27 -2.28 16 27 N -0.37 -5.11 10.28 30.99 0.32 -4.79 16 28 O 0.08 0.90 11.29 17.98 0.20 1.10 16 29 H 0.10 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.11 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.11 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.83 6.65 -51.93 -0.35 1.49 16 34 H 0.04 0.87 6.58 -51.93 -0.34 0.52 16 35 H 0.03 0.82 6.54 -51.93 -0.34 0.48 16 36 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 37 H 0.04 0.91 5.99 -51.93 -0.31 0.60 16 38 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.11 1.60 8.14 -51.93 -0.42 1.17 16 40 H 0.10 1.34 6.17 -51.93 -0.32 1.02 16 41 H 0.11 2.17 8.14 -51.93 -0.42 1.75 16 42 H 0.10 1.18 7.96 -51.93 -0.41 0.76 16 43 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.10 1.03 8.14 -51.92 -0.42 0.61 16 LS Contribution 373.71 15.07 5.63 5.63 Total: -1.00 -32.15 373.71 -9.97 -42.11 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -6.12 Total: 2.48 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -5.03 Total: -0.54 kcal Atomic # 7 Polarization: -66.83 SS G_CDS: 0.37 Total: -66.46 kcal Atomic # 8 Polarization: 0.90 SS G_CDS: 0.20 Total: 1.10 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -32.15 -9.97 -42.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772424851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.172 kcal (2) G-P(sol) polarization free energy of solvation -32.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 211.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 201.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.97 seconds