Wall clock time and date at job start Tue Mar 31 2020 17:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30921 * 126.40709 * 2 1 4 4 C 1.35369 * 105.57689 * 180.02562 * 3 2 1 5 5 C 1.47864 * 126.44667 * 180.02562 * 4 3 2 6 6 N 1.31256 * 126.45950 * 0.02562 * 5 4 3 7 7 N 1.28519 * 109.90889 * 179.97438 * 6 5 4 8 8 C 1.31522 * 110.05344 * 0.02562 * 7 6 5 9 9 N 1.38255 * 126.36355 * 179.97438 * 8 7 6 10 10 C 1.46900 * 111.00106 * 57.46563 * 9 8 7 11 11 C 1.46897 * 110.99991 * 293.51027 * 9 8 7 12 12 H 1.09005 * 109.47199 * 309.99789 * 11 9 8 13 13 C 1.52996 * 109.47164 * 70.00477 * 11 9 8 14 14 C 1.50702 * 109.47094 * 190.00039 * 11 9 8 15 15 H 1.08004 * 119.99918 * 0.02562 * 14 11 9 16 16 C 1.37877 * 119.99849 * 179.97438 * 14 11 9 17 17 N 1.31509 * 120.00211 * 0.02562 * 16 14 11 18 18 Si 1.86805 * 119.99697 * 180.02562 * 16 14 11 19 19 H 1.48499 * 109.47241 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47189 * 120.00333 * 18 16 14 21 21 H 1.48499 * 109.46881 * 240.00132 * 18 16 14 22 22 N 1.36304 * 107.26748 * 359.77092 * 8 7 6 23 23 C 1.46497 * 127.14840 * 180.22937 * 22 8 7 24 24 C 1.53002 * 109.47342 * 274.97900 * 23 22 8 25 25 C 1.53001 * 117.49892 * 243.62613 * 24 23 22 26 26 C 1.52994 * 117.50099 * 175.00456 * 24 23 22 27 27 N 1.30990 * 107.11408 * 0.02562 * 4 3 2 28 28 O 1.21283 * 110.05340 * 0.02562 * 27 4 3 29 29 H 1.09007 * 109.47155 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47527 * 299.99443 * 1 2 3 31 31 H 1.09005 * 109.47440 * 59.99803 * 1 2 3 32 32 H 1.09001 * 109.46837 * 65.52216 * 10 9 8 33 33 H 1.09001 * 109.46992 * 185.51710 * 10 9 8 34 34 H 1.08996 * 109.46834 * 305.52142 * 10 9 8 35 35 H 1.08991 * 109.47616 * 59.99458 * 13 11 9 36 36 H 1.09001 * 109.46935 * 180.02562 * 13 11 9 37 37 H 1.09000 * 109.46936 * 299.99325 * 13 11 9 38 38 H 0.97003 * 120.00318 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.47795 * 34.98084 * 23 22 8 40 40 H 1.09001 * 109.47187 * 154.97834 * 23 22 8 41 41 H 1.08993 * 115.54869 * 29.32935 * 24 23 22 42 42 H 1.09001 * 117.49974 * 359.97438 * 25 24 23 43 43 H 1.08995 * 117.50002 * 145.01303 * 25 24 23 44 44 H 1.09001 * 117.49774 * 214.98238 * 26 24 23 45 45 H 1.09008 * 117.50016 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2840 1.0537 0.0000 4 6 3.5492 0.5723 -0.0006 5 6 4.7932 1.3716 -0.0003 6 7 4.8788 2.6814 0.0011 7 7 6.1131 3.0394 0.0014 8 6 6.8903 1.9784 -0.0002 9 7 8.2729 1.9751 -0.0009 10 6 8.8017 2.7100 1.1560 11 6 8.8000 2.5224 -1.2580 12 1 8.3120 2.0324 -2.1006 13 6 8.5259 4.0265 -1.3141 14 6 10.2857 2.2797 -1.3277 15 1 10.7881 1.7695 -0.5191 16 6 11.0036 2.7081 -2.4242 17 7 10.3918 3.3289 -3.4090 18 14 12.8451 2.4066 -2.5108 19 1 13.2883 1.6945 -1.2853 20 1 13.1556 1.5793 -3.7043 21 1 13.5553 3.7068 -2.6113 22 7 6.0795 0.8828 0.0035 23 6 6.4917 -0.5230 0.0081 24 6 6.7552 -0.9819 -1.4275 25 6 5.8578 -2.0847 -1.9926 26 6 7.3111 -2.3932 -1.6273 27 7 3.4643 -0.7348 -0.0015 28 8 2.3005 -1.0760 -0.0020 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 8.5335 2.1855 2.0731 33 1 9.8870 2.7760 1.0793 34 1 8.3769 3.7136 1.1739 35 1 9.0139 4.5165 -0.4716 36 1 8.9167 4.4325 -2.2471 37 1 7.4513 4.2021 -1.2638 38 1 10.8969 3.6306 -4.1802 39 1 7.4021 -0.6328 0.5975 40 1 5.7005 -1.1323 0.4448 41 1 7.0930 -0.2061 -2.1145 42 1 5.0799 -2.4836 -1.3415 43 1 5.6048 -2.0344 -3.0516 44 1 8.0144 -2.5459 -2.4459 45 1 7.4895 -2.9948 -0.7359 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772424851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:37 Heat of formation + Delta-G solvation = 181.667047 kcal Electronic energy + Delta-G solvation = -29453.308858 eV Core-core repulsion = 25512.055690 eV Total energy + Delta-G solvation = -3941.253168 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.170 amu Computer time = 4.48 seconds Orbital eigenvalues (eV) -46.80643 -44.19702 -39.16027 -38.81721 -37.17013 -35.70322 -35.00562 -34.48141 -31.56714 -30.46684 -29.76986 -28.92685 -27.37224 -27.14635 -26.21454 -24.18645 -23.45656 -23.20208 -22.47388 -22.06789 -20.97437 -19.45154 -18.96496 -18.53352 -18.21055 -17.64484 -17.15403 -16.81379 -16.54656 -16.08488 -15.58380 -15.52849 -15.24340 -14.85330 -14.44958 -14.21344 -14.19279 -14.08000 -13.47481 -13.23039 -13.17921 -13.12228 -13.03324 -12.99649 -12.77091 -12.67695 -12.50693 -12.48249 -12.33655 -12.20914 -12.04926 -11.86996 -11.72504 -11.40774 -11.16700 -11.07058 -10.96719 -10.56085 -10.09768 -9.61577 -8.15874 -6.29606 -0.43283 0.36395 0.80055 1.06616 1.43391 1.45269 1.57312 1.73062 1.76690 2.03859 2.39869 2.60476 2.76105 2.88013 3.14599 3.49190 3.54438 3.61491 3.84092 3.95017 3.98244 4.03224 4.19241 4.31000 4.39115 4.52872 4.60505 4.62325 4.63851 4.66851 4.70300 4.77555 4.87712 4.88932 4.97160 5.02041 5.05639 5.06034 5.15746 5.17619 5.24834 5.48137 5.57652 5.69574 5.93540 6.15472 6.47534 6.79878 6.91213 7.35753 7.39630 8.91310 Molecular weight = 332.17amu Principal moments of inertia in cm(-1) A = 0.017227 B = 0.003546 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.989071 B = 7895.364006 C = 8794.080447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.205 3.795 3 N -0.486 5.486 4 C 0.240 3.760 5 C 0.227 3.773 6 N -0.265 5.265 7 N -0.333 5.333 8 C 0.385 3.615 9 N -0.464 5.464 10 C 0.046 3.954 11 C 0.241 3.759 12 H -0.007 1.007 13 C -0.160 4.160 14 C -0.513 4.513 15 H 0.073 0.927 16 C 0.014 3.986 17 N -0.922 5.922 18 Si 0.968 3.032 19 H -0.259 1.259 20 H -0.284 1.284 21 H -0.282 1.282 22 N -0.443 5.443 23 C 0.147 3.853 24 C -0.194 4.194 25 C -0.160 4.160 26 C -0.141 4.141 27 N -0.364 5.364 28 O 0.105 5.895 29 H 0.133 0.867 30 H 0.122 0.878 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.032 0.968 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.030 0.970 38 H 0.262 0.738 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.068 0.932 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.099 0.901 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.486 -14.650 7.981 24.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.014 4.014 3 N -0.220 5.220 4 C -0.031 4.031 5 C -0.040 4.040 6 N -0.110 5.110 7 N -0.179 5.179 8 C 0.028 3.972 9 N -0.190 5.190 10 C -0.101 4.101 11 C 0.135 3.865 12 H 0.011 0.989 13 C -0.219 4.219 14 C -0.551 4.551 15 H 0.091 0.909 16 C -0.186 4.186 17 N -0.561 5.561 18 Si 0.793 3.207 19 H -0.183 1.183 20 H -0.210 1.210 21 H -0.208 1.208 22 N -0.135 5.135 23 C 0.026 3.974 24 C -0.214 4.214 25 C -0.197 4.197 26 C -0.179 4.179 27 N -0.069 5.069 28 O 0.038 5.962 29 H 0.151 0.849 30 H 0.140 0.860 31 H 0.137 0.863 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.087 0.913 42 H 0.131 0.869 43 H 0.109 0.891 44 H 0.118 0.882 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.878 -13.739 7.872 23.142 hybrid contribution 1.221 0.049 -0.773 1.446 sum -15.656 -13.690 7.099 21.976 Atomic orbital electron populations 1.20904 0.75225 1.08407 1.07248 1.29985 1.00518 0.78447 0.92422 1.72066 0.98629 1.29987 1.21318 1.21473 0.89942 0.86870 1.04864 1.20446 0.82498 0.90540 1.10501 1.74321 1.12651 1.07887 1.16151 1.74861 0.96474 1.24479 1.22053 1.22834 0.92330 0.82539 0.99473 1.59274 0.96064 1.56444 1.07229 1.22334 1.01823 0.95897 0.90078 1.19047 0.94700 0.90092 0.82636 0.98884 1.22285 0.98142 0.99588 1.01922 1.21241 0.91433 1.37374 1.05075 0.90916 1.25754 1.03236 0.94578 0.94983 1.70065 1.37516 1.39714 1.08802 0.85343 0.79228 0.77756 0.78326 1.18283 1.20957 1.20814 1.46436 1.04588 1.09542 1.52966 1.21740 1.03078 0.75240 0.97330 1.22307 1.09057 0.93974 0.96012 1.23118 0.94431 1.00329 1.01841 1.23027 0.96279 0.94152 1.04408 1.74944 0.98890 1.12821 1.20271 1.85263 1.10422 1.35773 1.64768 0.84873 0.85978 0.86283 0.90762 0.88951 0.94880 0.94077 0.91904 0.95131 0.92835 0.87031 0.86554 0.91315 0.86917 0.89084 0.88233 0.86006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.20 10.51 71.24 0.75 0.54 16 2 C 0.21 3.45 8.49 88.36 0.75 4.20 16 3 N -0.49 -13.64 11.58 -302.32 -3.50 -17.14 16 4 C 0.24 7.69 8.03 137.02 1.10 8.79 16 5 C 0.23 8.94 8.00 136.21 1.09 10.03 16 6 N -0.26 -12.00 12.23 -50.77 -0.62 -12.62 16 7 N -0.33 -15.80 9.81 -58.14 -0.57 -16.37 16 8 C 0.38 17.01 6.24 260.22 1.62 18.63 16 9 N -0.46 -20.71 4.72 -711.22 -3.36 -24.07 16 10 C 0.05 1.79 8.53 127.69 1.09 2.88 16 11 C 0.24 12.61 2.28 44.17 0.10 12.71 16 12 H -0.01 -0.41 8.05 -2.38 -0.02 -0.43 16 13 C -0.16 -8.48 8.17 71.98 0.59 -7.89 16 14 C -0.51 -27.35 7.83 25.60 0.20 -27.15 16 15 H 0.07 3.73 7.17 -2.91 -0.02 3.71 16 16 C 0.01 0.74 5.30 84.66 0.45 1.18 16 17 N -0.92 -53.36 11.32 21.45 0.24 -53.12 16 18 Si 0.97 42.59 29.54 68.60 2.03 44.61 16 19 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 20 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 22 N -0.44 -17.03 2.83 -516.87 -1.46 -18.49 16 23 C 0.15 4.49 6.20 86.38 0.54 5.02 16 24 C -0.19 -6.03 6.01 -10.79 -0.06 -6.09 16 25 C -0.16 -3.86 10.18 30.59 0.31 -3.55 16 26 C -0.14 -3.30 10.25 30.59 0.31 -2.99 16 27 N -0.36 -9.37 10.28 -58.84 -0.60 -9.98 16 28 O 0.10 1.96 11.29 74.40 0.84 2.80 16 29 H 0.13 -0.40 8.14 -2.38 -0.02 -0.42 16 30 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.12 0.24 8.14 -2.38 -0.02 0.22 16 32 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.09 3.61 6.65 -2.39 -0.02 3.60 16 34 H 0.03 1.35 6.58 -2.39 -0.02 1.33 16 35 H 0.04 2.05 6.54 -2.39 -0.02 2.03 16 36 H 0.06 3.64 6.07 -2.39 -0.01 3.63 16 37 H 0.03 1.61 5.99 -2.39 -0.01 1.60 16 38 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 39 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.12 3.05 6.17 -2.39 -0.01 3.03 16 41 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 42 H 0.11 2.39 7.96 -2.39 -0.02 2.37 16 43 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.12 2.23 8.14 -2.38 -0.02 2.21 16 Total: -1.00 -74.54 373.71 2.85 -71.68 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 1.03 Total: 16.36 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 8.84 Total: 16.32 kcal Atomic # 7 Polarization: -141.91 SS G_CDS: -9.87 Total: -151.78 kcal Atomic # 8 Polarization: 1.96 SS G_CDS: 0.84 Total: 2.80 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -74.54 2.85 -71.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772424851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 253.348 kcal (2) G-P(sol) polarization free energy of solvation -74.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 178.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 181.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.48 seconds