Wall clock time and date at job start Tue Mar 31 2020 17:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00259 * 2 1 4 4 H 1.48496 * 109.47129 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46994 * 299.99664 * 3 2 1 6 6 H 1.48499 * 109.46923 * 59.99472 * 3 2 1 7 7 C 1.37883 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99383 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00169 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46902 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47058 * 179.97438 * 10 9 7 12 12 N 1.46505 * 109.47334 * 180.02562 * 11 10 9 13 13 C 1.34769 * 120.00242 * 180.27090 * 12 11 10 14 14 O 1.21587 * 120.00166 * 359.73048 * 13 12 11 15 15 N 1.34776 * 120.00120 * 179.72268 * 13 12 11 16 16 C 1.46500 * 119.99996 * 180.02562 * 15 13 12 17 17 C 1.53003 * 109.47158 * 185.02322 * 16 15 13 18 18 C 1.52998 * 115.55315 * 65.47450 * 17 16 15 19 19 O 1.42897 * 109.47134 * 62.23282 * 18 17 16 20 20 C 1.53001 * 117.49850 * 211.14604 * 17 16 15 21 21 C 1.53003 * 117.49378 * 279.80428 * 17 16 15 22 22 H 1.09002 * 117.49475 * 145.02091 * 21 17 16 23 23 C 1.50697 * 117.49969 * 0.02562 * 21 17 16 24 24 C 1.38239 * 119.99952 * 299.72324 * 23 21 17 25 25 C 1.38234 * 119.99732 * 179.81398 * 24 23 21 26 26 C 1.38237 * 120.00349 * 0.39433 * 25 24 23 27 27 C 1.38239 * 119.99821 * 359.86008 * 26 25 24 28 28 C 1.38234 * 119.99742 * 120.00311 * 23 21 17 29 29 H 0.97001 * 119.99906 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.47465 * 59.99879 * 9 7 2 31 31 H 1.08998 * 109.47256 * 299.99200 * 9 7 2 32 32 H 1.08999 * 109.47323 * 59.99968 * 10 9 7 33 33 H 1.08993 * 109.47551 * 299.99903 * 10 9 7 34 34 H 1.08998 * 109.47173 * 60.00396 * 11 10 9 35 35 H 1.08998 * 109.47393 * 299.99812 * 11 10 9 36 36 H 0.97002 * 119.99928 * 0.02562 * 12 11 10 37 37 H 0.96994 * 120.00169 * 0.02562 * 15 13 12 38 38 H 1.09006 * 109.47068 * 305.01522 * 16 15 13 39 39 H 1.09001 * 109.47528 * 65.01861 * 16 15 13 40 40 H 1.08998 * 109.47298 * 182.23952 * 18 17 16 41 41 H 1.09010 * 109.46702 * 302.23590 * 18 17 16 42 42 H 0.96700 * 114.00055 * 179.97438 * 19 18 17 43 43 H 1.08997 * 117.50043 * 214.97899 * 20 17 16 44 44 H 1.09001 * 117.49818 * 359.97438 * 20 17 16 45 45 H 1.07994 * 119.99743 * 0.02562 * 24 23 21 46 46 H 1.07997 * 119.99894 * 180.23276 * 25 24 23 47 47 H 1.07994 * 120.00239 * 179.83783 * 26 25 24 48 48 H 1.07995 * 120.00037 * 179.97438 * 27 26 25 49 49 H 1.07992 * 120.00471 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 7 2.4321 -6.1007 0.0018 13 6 1.9829 -7.3713 -0.0031 14 8 0.7875 -7.5935 -0.0031 15 7 2.8586 -8.3957 -0.0082 16 6 2.3703 -9.7769 -0.0140 17 6 3.5551 -10.7374 0.1073 18 6 4.3227 -10.6748 1.4293 19 8 3.4525 -11.0379 2.5030 20 6 3.4310 -12.1019 -0.5736 21 6 4.3567 -11.0340 -1.1617 22 1 5.4309 -11.1850 -1.0546 23 6 3.9192 -10.3575 -2.4352 24 6 2.6497 -10.5799 -2.9351 25 6 2.2470 -9.9562 -4.1013 26 6 3.1166 -9.1166 -4.7719 27 6 4.3879 -8.8983 -4.2748 28 6 4.7893 -9.5190 -3.1066 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6241 -2.5568 0.8903 32 1 2.8719 -3.6044 0.8905 33 1 2.8718 -3.6045 -0.8894 34 1 0.8532 -5.0451 -0.8886 35 1 0.8538 -5.0446 0.8914 36 1 3.3858 -5.9235 0.0021 37 1 3.8123 -8.2186 -0.0079 38 1 1.6937 -9.9267 0.8274 39 1 1.8394 -9.9707 -0.9461 40 1 5.1644 -11.3664 1.3939 41 1 4.6917 -9.6613 1.5875 42 1 3.8733 -11.0205 3.3734 43 1 3.8964 -12.9549 -0.0799 44 1 2.5051 -12.3155 -1.1076 45 1 1.9714 -11.2381 -2.4128 46 1 1.2540 -10.1270 -4.4898 47 1 2.8029 -8.6314 -5.6843 48 1 5.0675 -8.2427 -4.7989 49 1 5.7825 -9.3485 -2.7183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290871663.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:38 Heat of formation + Delta-G solvation = -42.686094 kcal Electronic energy + Delta-G solvation = -28069.701909 eV Core-core repulsion = 24189.967651 eV Total energy + Delta-G solvation = -3879.734258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.66276 -39.43946 -38.26259 -36.27765 -35.38787 -34.02900 -33.20784 -31.28841 -31.08144 -30.91224 -27.82766 -26.86087 -25.81484 -24.16144 -22.90102 -22.64409 -20.98159 -20.71227 -20.27071 -19.64610 -18.00692 -17.74057 -17.14453 -16.41572 -16.06143 -15.76549 -15.64075 -15.23676 -15.05054 -14.78106 -14.47511 -14.15378 -14.04231 -13.87538 -13.80098 -13.57210 -13.35139 -12.92226 -12.59562 -12.33911 -12.26264 -11.80195 -11.73175 -11.64311 -11.25103 -11.11681 -10.90247 -10.85367 -10.75034 -10.67885 -10.54438 -10.24045 -9.96402 -9.82119 -9.40104 -9.17598 -9.08269 -8.96368 -8.77820 -8.46858 -8.35259 -5.99746 -4.02604 1.08193 1.20958 2.78434 3.22072 3.30964 3.38346 3.41910 3.51637 3.73269 3.76664 4.21163 4.31159 4.43662 4.45601 4.53917 4.58793 4.64397 4.77351 4.84751 4.92542 5.00403 5.20900 5.24685 5.33205 5.36003 5.36416 5.46809 5.62156 5.74563 5.75810 5.79372 5.82984 5.87178 5.87896 6.24432 6.27231 6.34207 6.36347 6.56803 6.61274 6.67936 6.79101 6.88527 7.07896 7.18024 7.26594 7.67133 7.80367 7.99745 8.27238 8.40786 8.88733 9.04431 9.61350 11.11643 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012972 B = 0.002363 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2157.966026 B =11846.699481 C =13016.023936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.119 4.119 11 C 0.136 3.864 12 N -0.743 5.743 13 C 0.702 3.298 14 O -0.594 6.594 15 N -0.743 5.743 16 C 0.177 3.823 17 C -0.130 4.130 18 C 0.116 3.884 19 O -0.565 6.565 20 C -0.147 4.147 21 C -0.098 4.098 22 H 0.116 0.884 23 C -0.051 4.051 24 C -0.115 4.115 25 C -0.114 4.114 26 C -0.120 4.120 27 C -0.116 4.116 28 C -0.112 4.112 29 H 0.260 0.740 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.392 0.608 37 H 0.391 0.609 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.381 0.619 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.122 0.878 46 H 0.121 0.879 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.311 -27.765 -3.289 30.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.157 4.157 11 C 0.013 3.987 12 N -0.397 5.397 13 C 0.401 3.599 14 O -0.472 6.472 15 N -0.398 5.398 16 C 0.053 3.947 17 C -0.130 4.130 18 C 0.038 3.962 19 O -0.370 6.370 20 C -0.184 4.184 21 C -0.116 4.116 22 H 0.134 0.866 23 C -0.051 4.051 24 C -0.133 4.133 25 C -0.132 4.132 26 C -0.138 4.138 27 C -0.134 4.134 28 C -0.130 4.130 29 H 0.070 0.930 30 H 0.037 0.963 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.225 0.775 37 H 0.224 0.776 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.228 0.772 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.140 0.860 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.580 -27.897 -3.776 30.440 hybrid contribution 1.781 1.278 0.431 2.234 sum 13.361 -26.619 -3.345 29.972 Atomic orbital electron populations 1.69983 1.06046 1.26533 1.50712 1.25038 0.94854 0.99289 0.95346 0.86533 0.80031 0.83813 0.77587 1.19784 1.21012 1.21014 1.21246 0.93001 0.90956 1.50695 0.92636 1.19029 0.93870 0.90819 0.97680 1.21877 0.99747 0.93399 1.00721 1.21475 0.91300 0.84165 1.01767 1.45351 1.10251 1.04493 1.79597 1.15963 0.85261 0.80693 0.77934 1.90911 1.14182 1.84130 1.58012 1.44931 1.08616 1.05058 1.81244 1.20610 0.93368 0.78173 1.02594 1.21710 0.99999 0.99372 0.91961 1.21522 0.90676 0.98766 0.85235 1.86509 1.40773 1.91935 1.17782 1.23185 1.01634 0.91656 1.01968 1.21210 0.97948 1.01943 0.90497 0.86599 1.18945 0.94185 0.97495 0.94514 1.21042 0.95689 1.00263 0.96267 1.21144 0.99591 0.97028 0.95421 1.21186 0.94065 0.98398 1.00165 1.21135 0.96466 0.99525 0.96319 1.20892 0.99416 0.97153 0.95571 0.93000 0.96265 0.96244 0.92852 0.92850 0.92097 0.92062 0.77538 0.77636 0.90518 0.91232 0.93372 0.93070 0.77229 0.87727 0.87812 0.85992 0.86048 0.86119 0.86038 0.86213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.10 13.29 55.43 0.74 -26.37 16 2 C 0.06 1.61 5.46 -17.81 -0.10 1.52 16 3 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 11 C 0.14 2.55 5.67 -4.04 -0.02 2.53 16 12 N -0.74 -11.49 5.56 -65.23 -0.36 -11.85 16 13 C 0.70 11.53 8.57 -86.93 -0.74 10.79 16 14 O -0.59 -12.45 16.34 5.29 0.09 -12.37 16 15 N -0.74 -8.91 5.45 -65.22 -0.36 -9.27 16 16 C 0.18 2.02 4.82 -4.04 -0.02 2.00 16 17 C -0.13 -1.03 1.81 -154.51 -0.28 -1.31 16 18 C 0.12 0.78 6.80 37.16 0.25 1.04 16 19 O -0.56 -4.62 13.45 -35.23 -0.47 -5.09 16 20 C -0.15 -0.99 9.28 -26.69 -0.25 -1.24 16 21 C -0.10 -0.67 5.74 -91.73 -0.53 -1.19 16 22 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 23 C -0.05 -0.44 5.04 -104.62 -0.53 -0.97 16 24 C -0.11 -1.09 7.36 -39.58 -0.29 -1.38 16 25 C -0.11 -1.13 10.05 -39.58 -0.40 -1.52 16 26 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 27 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 28 C -0.11 -0.96 9.74 -39.58 -0.39 -1.34 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.39 4.88 8.49 -40.82 -0.35 4.54 16 37 H 0.39 3.69 8.20 -40.82 -0.33 3.35 16 38 H 0.08 1.06 8.01 -51.93 -0.42 0.65 16 39 H 0.07 0.85 4.99 -51.93 -0.26 0.60 16 40 H 0.05 0.24 8.11 -51.93 -0.42 -0.19 16 41 H 0.05 0.33 7.83 -51.92 -0.41 -0.08 16 42 H 0.38 1.48 9.12 45.56 0.42 1.90 16 43 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.10 0.70 6.18 -51.93 -0.32 0.38 16 45 H 0.12 1.04 5.34 -52.49 -0.28 0.76 16 46 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 47 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 48 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 49 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 LS Contribution 404.41 15.07 6.09 6.09 Total: -1.00 -35.87 404.41 -10.96 -46.83 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -6.98 Total: 6.60 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -4.68 Total: -11.19 kcal Atomic # 7 Polarization: -47.50 SS G_CDS: 0.02 Total: -47.49 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.39 Total: -17.46 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.87 -10.96 -46.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290871663.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.141 kcal (2) G-P(sol) polarization free energy of solvation -35.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds