Wall clock time and date at job start Tue Mar 31 2020 17:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38250 * 120.00176 * 2 1 4 4 C 1.38207 * 120.00228 * 180.02562 * 3 2 1 5 5 C 1.38259 * 119.99974 * 0.02562 * 4 3 2 6 6 C 1.38213 * 119.99818 * 359.95139 * 5 4 3 7 7 C 1.50705 * 119.99853 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46870 * 90.00162 * 7 6 5 9 9 O 1.21277 * 119.99984 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99819 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99954 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47066 * 179.97438 * 11 10 8 13 13 H 1.09005 * 108.56606 * 60.00478 * 12 11 10 14 14 C 1.46922 * 108.61929 * 177.94558 * 12 11 10 15 15 N 1.50107 * 106.78436 * 178.04598 * 14 12 11 16 16 C 1.36942 * 120.74724 * 111.17653 * 15 14 12 17 17 H 1.07995 * 119.99489 * 155.71631 * 16 15 14 18 18 C 1.38808 * 120.00020 * 335.71410 * 16 15 14 19 19 N 1.31618 * 120.00576 * 340.86889 * 18 16 15 20 20 Si 1.86805 * 119.99688 * 160.86614 * 18 16 15 21 21 H 1.48506 * 109.46654 * 90.00349 * 20 18 16 22 22 H 1.48498 * 109.46962 * 210.00051 * 20 18 16 23 23 H 1.48494 * 109.47097 * 330.00331 * 20 18 16 24 24 C 1.43422 * 118.61328 * 291.15550 * 15 14 12 25 25 C 1.55326 * 116.23554 * 89.40395 * 24 15 14 26 26 C 1.55183 * 108.87841 * 319.46491 * 25 24 15 27 27 O 1.39652 * 110.56762 * 322.14258 * 26 25 24 28 28 C 1.38213 * 119.99558 * 180.21703 * 2 1 3 29 29 H 1.08999 * 109.47735 * 89.99736 * 1 2 3 30 30 H 1.09006 * 109.47187 * 209.99901 * 1 2 3 31 31 H 1.08998 * 109.47081 * 329.99592 * 1 2 3 32 32 H 1.08002 * 119.99956 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.00240 * 179.97438 * 4 3 2 34 34 H 1.07996 * 119.99975 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.47095 * 329.99919 * 7 6 5 36 36 H 1.08992 * 109.47012 * 210.00199 * 7 6 5 37 37 H 0.97000 * 119.99901 * 359.97438 * 10 8 7 38 38 H 1.08992 * 109.47361 * 299.99891 * 11 10 8 39 39 H 1.09002 * 109.47296 * 59.99948 * 11 10 8 40 40 H 1.09000 * 109.98878 * 297.24013 * 14 12 11 41 41 H 1.08995 * 109.98782 * 58.60463 * 14 12 11 42 42 H 0.96993 * 120.00173 * 179.97438 * 19 18 16 43 43 H 1.09002 * 108.12432 * 327.64378 * 24 15 14 44 44 H 1.08998 * 107.95882 * 211.03492 * 24 15 14 45 45 H 1.09007 * 109.56674 * 199.64809 * 25 24 15 46 46 H 1.09003 * 109.57057 * 79.28447 * 25 24 15 47 47 H 1.09005 * 109.26064 * 201.86656 * 26 25 24 48 48 H 1.08997 * 109.25760 * 82.42431 * 26 25 24 49 49 H 1.07992 * 120.00593 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 3.5806 -1.1970 -0.0011 7 6 4.3341 -2.5022 -0.0017 8 6 4.5862 -2.9372 1.4189 9 8 4.1932 -2.2545 2.3410 10 7 5.2494 -4.0845 1.6647 11 6 5.4950 -4.5071 3.0457 12 6 6.2599 -5.8322 3.0451 13 1 7.2079 -5.6855 2.5275 14 6 6.5391 -6.2133 4.4363 15 7 7.2448 -7.5373 4.3898 16 6 8.5647 -7.6399 4.7402 17 1 8.9606 -8.5845 5.0825 18 6 9.3936 -6.5297 4.6552 19 7 9.0458 -5.5043 3.9070 20 14 11.0029 -6.4910 5.6030 21 1 12.0874 -7.0558 4.7601 22 1 11.3334 -5.0881 5.9602 23 1 10.8673 -7.2985 6.8418 24 6 6.5078 -8.6941 3.9709 25 6 6.5122 -8.9966 2.4474 26 6 6.3734 -7.6608 1.6699 27 8 5.4961 -6.7978 2.3300 28 6 2.1980 -1.1970 -0.0045 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1326 -0.0010 34 1 5.3516 -0.0001 -0.0024 35 1 5.2861 -2.3718 -0.5163 36 1 3.7447 -3.2617 -0.5151 37 1 5.5640 -4.6303 0.9272 38 1 6.0843 -3.7473 3.5589 39 1 4.5431 -4.6377 3.5605 40 1 7.1809 -5.4674 4.9053 41 1 5.6059 -6.3057 4.9918 42 1 9.6249 -4.7284 3.8479 43 1 5.4726 -8.5702 4.2892 44 1 6.9183 -9.5603 4.4899 45 1 5.6750 -9.6503 2.2026 46 1 7.4490 -9.4824 2.1743 47 1 5.9918 -7.8650 0.6695 48 1 7.3520 -7.1874 1.5910 49 1 1.6580 -2.1323 -0.0085 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150248564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:53 Heat of formation + Delta-G solvation = -35.506387 kcal Electronic energy + Delta-G solvation = -28755.933822 eV Core-core repulsion = 24876.510900 eV Total energy + Delta-G solvation = -3879.422923 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.99999 -39.19667 -38.44961 -35.03203 -34.48664 -33.53435 -32.26401 -31.99080 -31.15576 -28.90263 -27.83638 -26.91392 -25.37975 -25.12340 -22.71436 -22.15042 -21.06034 -20.79275 -19.79647 -19.57564 -17.19085 -16.81248 -16.54530 -16.09872 -15.72530 -15.58905 -14.96568 -14.76398 -14.61823 -14.38193 -14.10415 -13.88853 -13.77255 -13.25481 -13.12897 -13.06646 -12.93946 -12.74524 -12.46595 -12.29813 -11.97641 -11.93287 -11.79198 -11.41767 -11.22436 -11.12680 -11.03311 -10.85151 -10.74372 -10.51171 -10.17955 -9.98558 -9.73159 -9.62905 -9.51351 -8.83684 -8.79458 -8.64386 -8.62445 -8.50631 -6.83574 -5.93950 -3.32412 1.29822 1.37116 2.92654 3.31415 3.39966 3.42342 3.44731 3.86502 4.42145 4.57925 4.68774 4.70807 4.82319 5.05247 5.14386 5.19986 5.22085 5.23494 5.26970 5.42079 5.45457 5.46045 5.60596 5.68598 5.71698 5.80318 5.90858 6.00923 6.01166 6.06823 6.14015 6.31999 6.40770 6.41640 6.47175 6.50975 6.57324 6.57592 6.65420 6.69760 6.80346 6.92451 6.95144 6.97827 7.10945 7.31623 7.70141 7.85519 8.12068 8.30533 8.54110 9.05385 9.73594 10.27990 11.15193 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.017564 B = 0.002562 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.798928 B =10924.659978 C =11925.716426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.089 4.089 3 C -0.125 4.125 4 C -0.116 4.116 5 C -0.111 4.111 6 C -0.056 4.056 7 C -0.105 4.105 8 C 0.510 3.490 9 O -0.540 6.540 10 N -0.715 5.715 11 C 0.122 3.878 12 C 0.061 3.939 13 H 0.107 0.893 14 C 0.142 3.858 15 N -0.588 5.588 16 C -0.248 4.248 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.908 5.908 20 Si 0.904 3.096 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.160 3.840 25 C -0.172 4.172 26 C 0.067 3.933 27 O -0.370 6.370 28 C -0.106 4.106 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.400 0.600 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.104 0.896 41 H 0.019 0.981 42 H 0.255 0.745 43 H 0.031 0.969 44 H 0.033 0.967 45 H 0.049 0.951 46 H 0.056 0.944 47 H 0.051 0.949 48 H 0.063 0.937 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.538 7.736 -11.292 17.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.089 4.089 3 C -0.143 4.143 4 C -0.134 4.134 5 C -0.129 4.129 6 C -0.056 4.056 7 C -0.145 4.145 8 C 0.295 3.705 9 O -0.418 6.418 10 N -0.366 5.366 11 C -0.002 4.002 12 C 0.002 3.998 13 H 0.125 0.875 14 C 0.018 3.982 15 N -0.308 5.308 16 C -0.378 4.378 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.553 5.553 20 Si 0.733 3.267 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.206 1.206 24 C 0.031 3.969 25 C -0.213 4.213 26 C -0.011 4.011 27 O -0.288 6.288 28 C -0.124 4.124 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.234 0.766 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.122 0.878 41 H 0.037 0.963 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -11.919 8.350 -10.579 17.992 hybrid contribution 1.434 -0.312 0.013 1.468 sum -10.485 8.038 -10.567 16.917 Atomic orbital electron populations 1.20775 0.91344 1.02787 1.02057 1.19848 0.95941 0.93137 0.99939 1.20973 0.94281 0.97318 1.01699 1.21061 0.94287 0.97835 1.00256 1.20980 0.99768 0.92002 1.00124 1.19287 0.93492 0.93738 0.99099 1.20701 1.02164 0.96083 0.95538 1.20408 0.78176 0.81047 0.90877 1.90709 1.51022 1.53851 1.46190 1.45931 1.57506 1.23358 1.09777 1.21680 1.00133 0.96406 0.82011 1.22197 0.94482 0.85157 0.97932 0.87549 1.20748 0.94406 0.89693 0.93395 1.44111 1.08276 1.03232 1.75181 1.19246 0.84903 0.97077 1.36525 0.91322 1.24897 0.97814 0.98010 0.98865 1.69857 1.38475 1.07929 1.39042 0.86277 0.83364 0.76926 0.80088 1.21543 1.21522 1.20579 1.20380 0.94906 0.90435 0.91140 1.23582 0.99815 0.97160 1.00777 1.22343 0.93960 0.91407 0.93348 1.87514 1.31982 1.43796 1.65537 1.20850 0.93404 0.97586 1.00537 0.91357 0.91543 0.91665 0.86397 0.86179 0.86238 0.88032 0.88106 0.76633 0.90485 0.92146 0.87832 0.96253 0.93476 0.95018 0.94908 0.93193 0.92503 0.93123 0.91923 0.86314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.01 0.36 -0.58 16 2 C -0.09 -0.98 5.88 -104.63 -0.62 -1.60 16 3 C -0.12 -1.33 9.70 -39.59 -0.38 -1.72 16 4 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 5 C -0.11 -1.35 9.70 -39.58 -0.38 -1.73 16 6 C -0.06 -0.70 4.37 -104.62 -0.46 -1.16 16 7 C -0.10 -1.20 5.83 -29.03 -0.17 -1.36 16 8 C 0.51 7.98 7.82 -10.99 -0.09 7.89 16 9 O -0.54 -10.66 16.03 5.56 0.09 -10.57 16 10 N -0.72 -11.18 5.41 -60.30 -0.33 -11.50 16 11 C 0.12 2.25 5.25 -4.04 -0.02 2.23 16 12 C 0.06 1.22 1.98 -29.64 -0.06 1.16 16 13 H 0.11 2.39 5.24 -51.93 -0.27 2.12 16 14 C 0.14 3.21 4.71 -4.94 -0.02 3.19 16 15 N -0.59 -13.99 2.61 -174.51 -0.46 -14.45 16 16 C -0.25 -6.42 9.62 -15.06 -0.14 -6.57 16 17 H 0.07 1.78 7.87 -52.49 -0.41 1.37 16 18 C 0.00 0.05 4.93 -17.43 -0.09 -0.04 16 19 N -0.91 -23.51 9.56 55.49 0.53 -22.98 16 20 Si 0.90 20.77 29.60 -169.99 -5.03 15.74 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.16 3.36 5.33 -4.44 -0.02 3.34 16 25 C -0.17 -3.17 6.75 -24.34 -0.16 -3.33 16 26 C 0.07 1.23 6.38 38.31 0.24 1.47 16 27 O -0.37 -7.09 9.44 -31.97 -0.30 -7.39 16 28 C -0.11 -1.28 9.36 -39.58 -0.37 -1.65 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 34 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.10 0.95 8.09 -51.93 -0.42 0.53 16 36 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 37 H 0.40 5.49 8.26 -40.82 -0.34 5.15 16 38 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.10 2.57 6.03 -51.93 -0.31 2.26 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 43 H 0.03 0.65 7.98 -51.93 -0.41 0.24 16 44 H 0.03 0.68 7.95 -51.93 -0.41 0.26 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.06 1.29 6.66 -51.93 -0.35 0.94 16 49 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 LS Contribution 391.51 15.07 5.90 5.90 Total: -1.00 -29.74 391.51 -10.35 -40.10 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -7.97 Total: 7.30 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: -2.78 Total: -2.14 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: -0.25 Total: -48.94 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.21 Total: -17.96 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.74 -10.35 -40.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150248564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.589 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds