Wall clock time and date at job start Tue Mar 31 2020 18:10:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34179 * 125.43534 * 2 1 4 4 C 1.47025 * 105.94757 * 180.14715 * 3 2 1 5 5 C 1.47387 * 127.18519 * 179.83434 * 4 3 2 6 6 O 1.21608 * 119.99911 * 31.80251 * 5 4 3 7 7 N 1.34776 * 119.99471 * 211.79724 * 5 4 3 8 8 C 1.46928 * 120.63133 * 6.52352 * 7 5 4 9 9 C 1.53189 * 108.89211 * 126.45962 * 8 7 5 10 10 C 1.53051 * 109.31537 * 54.56336 * 9 8 7 11 11 C 1.53043 * 109.53371 * 298.63407 * 10 9 8 12 12 H 1.08993 * 109.49636 * 301.38003 * 11 10 9 13 13 C 1.52995 * 109.49562 * 181.31636 * 11 10 9 14 14 H 1.08998 * 109.87459 * 61.55060 * 13 11 10 15 15 C 1.54324 * 109.88198 * 300.38027 * 13 11 10 16 16 C 1.55156 * 102.94642 * 218.38852 * 15 13 11 17 17 C 1.54916 * 101.57877 * 35.50288 * 16 15 13 18 18 N 1.47019 * 109.88403 * 182.57653 * 13 11 10 19 19 C 1.36935 * 125.64603 * 298.38994 * 18 13 11 20 20 H 1.08009 * 119.99942 * 345.39991 * 19 18 13 21 21 C 1.38811 * 120.00293 * 165.39552 * 19 18 13 22 22 N 1.31615 * 119.99855 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00159 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47259 * 60.00500 * 23 21 19 25 25 H 1.48499 * 109.47028 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47396 * 300.00480 * 23 21 19 27 27 C 1.46960 * 120.65198 * 186.33504 * 7 5 4 28 28 C 1.36413 * 105.61874 * 359.57605 * 4 3 2 29 29 O 1.33656 * 108.39773 * 0.25661 * 28 4 3 30 30 H 1.09001 * 109.46738 * 180.31108 * 1 2 3 31 31 H 1.08998 * 109.46567 * 300.30838 * 1 2 3 32 32 H 1.08991 * 109.47132 * 60.31000 * 1 2 3 33 33 H 1.07999 * 127.02461 * 359.97438 * 3 2 1 34 34 H 1.08994 * 109.58560 * 6.59888 * 8 7 5 35 35 H 1.09004 * 109.58261 * 246.31774 * 8 7 5 36 36 H 1.09002 * 109.49833 * 174.51062 * 9 8 7 37 37 H 1.08998 * 109.49695 * 294.60953 * 9 8 7 38 38 H 1.09003 * 109.45633 * 58.64935 * 10 9 8 39 39 H 1.08991 * 109.45951 * 178.62924 * 10 9 8 40 40 H 1.09003 * 110.72010 * 336.75458 * 15 13 11 41 41 H 1.09005 * 110.72067 * 100.02445 * 15 13 11 42 42 H 1.08995 * 111.00958 * 277.43023 * 16 15 13 43 43 H 1.09004 * 111.04213 * 153.58486 * 16 15 13 44 44 H 1.08999 * 110.36873 * 204.15220 * 17 16 15 45 45 H 1.08996 * 110.36570 * 81.82811 * 17 16 15 46 46 H 0.97007 * 120.00321 * 179.97438 * 22 21 19 47 47 H 1.09004 * 109.46577 * 113.75525 * 27 7 5 48 48 H 1.08998 * 109.59351 * 353.40167 * 27 7 5 49 49 H 1.08001 * 125.80155 * 180.26590 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 -0.0036 5 6 4.9025 1.4125 -0.0084 6 8 4.9205 2.4951 0.5452 7 7 6.0087 0.9530 -0.6263 8 6 5.9644 -0.2831 -1.4192 9 6 6.5131 0.0061 -2.8199 10 6 7.9073 0.6258 -2.6994 11 6 7.8152 1.9480 -1.9342 12 1 7.1397 2.6248 -2.4572 13 6 9.2043 2.5828 -1.8427 14 1 9.5798 2.7983 -2.8430 15 6 10.1705 1.6281 -1.1103 16 6 11.0304 2.5941 -0.2532 17 6 9.9902 3.6739 0.1364 18 7 9.1364 3.8230 -1.0561 19 6 8.4014 4.9327 -1.3776 20 1 7.9976 5.0433 -2.3732 21 6 8.1750 5.9156 -0.4238 22 7 8.6673 5.7811 0.7894 23 14 7.1728 7.4297 -0.8626 24 1 5.8096 7.0165 -1.2823 25 1 7.0778 8.3206 0.3217 26 1 7.8347 8.1559 -1.9759 27 6 7.2813 1.6807 -0.5234 28 6 3.5790 -0.7582 0.0043 29 8 2.2852 -1.0935 0.0063 30 1 -0.3633 -1.0277 0.0056 31 1 -0.3632 0.5186 0.8872 32 1 -0.3633 0.5090 -0.8927 33 1 1.9595 2.1230 -0.0004 34 1 4.9345 -0.6319 -1.4950 35 1 6.5747 -1.0477 -0.9383 36 1 6.5759 -0.9237 -3.3852 37 1 5.8493 0.7010 -3.3343 38 1 8.5640 -0.0592 -2.1631 39 1 8.3100 0.8102 -3.6953 40 1 9.6196 0.9349 -0.4745 41 1 10.7928 1.0874 -1.8234 42 1 11.8390 3.0255 -0.8432 43 1 11.4207 2.0905 0.6313 44 1 10.4888 4.6155 0.3663 45 1 9.3974 3.3398 0.9879 46 1 8.5094 6.4681 1.4558 47 1 8.0005 1.0782 0.0314 48 1 7.1203 2.6277 -0.0082 49 1 4.4103 -1.4476 0.0083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963290708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:47 Heat of formation + Delta-G solvation = 8.339041 kcal Electronic energy + Delta-G solvation = -30120.081080 eV Core-core repulsion = 26242.559438 eV Total energy + Delta-G solvation = -3877.521642 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.66949 -39.85547 -38.05600 -36.30916 -33.33750 -33.03875 -32.32802 -31.82610 -30.87912 -29.20573 -27.27503 -26.35392 -25.62169 -24.43581 -22.87800 -22.58291 -21.18500 -20.77810 -19.97413 -19.06570 -18.35752 -17.14510 -16.64053 -16.55987 -16.11672 -15.77324 -14.86298 -14.71743 -14.40555 -14.36493 -13.99204 -13.77928 -13.64151 -13.36087 -13.27308 -13.12218 -12.90948 -12.79070 -12.64954 -12.13670 -11.94851 -11.86754 -11.61312 -11.45488 -11.23467 -10.93555 -10.80693 -10.69860 -10.57196 -10.11455 -10.01288 -9.84971 -9.77170 -9.75209 -9.55521 -9.52042 -9.43606 -8.62162 -8.45388 -8.20353 -6.66068 -5.62573 -2.97328 1.37859 2.03327 2.70089 3.18673 3.49623 3.51157 3.55013 3.56162 4.39444 4.60146 4.64650 4.79695 4.86351 5.04724 5.05814 5.16233 5.20367 5.30278 5.37218 5.42305 5.44668 5.56837 5.63385 5.65277 5.69465 5.72058 5.79207 5.86599 5.92629 5.97194 6.02308 6.13502 6.21980 6.25918 6.28799 6.40119 6.42974 6.57230 6.65231 6.76418 6.90872 6.92171 6.96425 7.06723 7.14949 7.63057 7.72398 7.76211 7.90999 8.40451 8.55182 9.32232 9.93804 10.61542 11.49674 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.004144 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.412391 B = 6754.825393 C = 8323.042127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.018 4.018 3 C -0.165 4.165 4 C -0.214 4.214 5 C 0.576 3.424 6 O -0.517 6.517 7 N -0.607 5.607 8 C 0.094 3.906 9 C -0.132 4.132 10 C -0.115 4.115 11 C -0.106 4.106 12 H 0.070 0.930 13 C 0.168 3.832 14 H 0.034 0.966 15 C -0.128 4.128 16 C -0.150 4.150 17 C 0.173 3.827 18 N -0.592 5.592 19 C -0.229 4.229 20 H 0.071 0.929 21 C 0.003 3.997 22 N -0.914 5.914 23 Si 0.906 3.094 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.287 1.287 27 C 0.127 3.873 28 C 0.001 3.999 29 O -0.176 6.176 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.157 0.843 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.069 0.931 45 H 0.024 0.976 46 H 0.252 0.748 47 H 0.060 0.940 48 H 0.114 0.886 49 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.944 -18.175 -4.231 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.067 4.067 3 C -0.185 4.185 4 C -0.218 4.218 5 C 0.364 3.636 6 O -0.392 6.392 7 N -0.340 5.340 8 C -0.029 4.029 9 C -0.171 4.171 10 C -0.153 4.153 11 C -0.127 4.127 12 H 0.089 0.911 13 C 0.060 3.940 14 H 0.052 0.948 15 C -0.166 4.166 16 C -0.189 4.189 17 C 0.048 3.952 18 N -0.316 5.316 19 C -0.357 4.357 20 H 0.088 0.912 21 C -0.194 4.194 22 N -0.560 5.560 23 Si 0.736 3.264 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.213 1.213 27 C 0.007 3.993 28 C -0.068 4.068 29 O -0.073 6.073 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.175 0.825 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.042 0.958 46 H 0.063 0.937 47 H 0.078 0.922 48 H 0.133 0.867 49 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -9.112 -17.625 -3.785 20.199 hybrid contribution -0.406 0.913 -0.271 1.035 sum -9.518 -16.712 -4.056 19.655 Atomic orbital electron populations 1.20313 0.84757 1.03948 1.03820 1.22273 0.94059 0.83685 1.06689 1.22515 0.90067 0.99791 1.06110 1.21638 0.94956 0.93462 1.11775 1.17357 0.81807 0.85192 0.79267 1.90888 1.83326 1.20544 1.44454 1.48076 1.10472 1.25592 1.49888 1.22031 1.01840 0.86887 0.92131 1.21896 0.98174 1.01001 0.95992 1.21618 0.95641 0.97477 1.00582 1.21953 1.00285 0.95307 0.95192 0.91145 1.20907 0.91198 0.87065 0.94850 0.94821 1.22665 0.97701 0.97489 0.98721 1.23024 0.98774 0.98568 0.98552 1.21414 0.89191 0.95690 0.88872 1.44481 1.52693 1.10250 1.24213 1.18813 1.25918 0.95546 0.95425 0.91167 1.24816 0.99987 0.99316 0.95324 1.69900 1.48438 1.34666 1.03017 0.86302 0.80471 0.82711 0.76899 1.21113 1.21648 1.21347 1.21776 0.81469 0.98407 0.97697 1.24541 0.83958 0.95417 1.02896 1.83714 1.16512 1.35450 1.71593 0.90541 0.89556 0.89594 0.82502 0.89780 0.91586 0.91261 0.91674 0.91976 0.92074 0.91719 0.92589 0.92495 0.92624 0.91290 0.95786 0.93740 0.92230 0.86742 0.76977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.40 36.01 0.37 -0.12 16 2 C -0.02 -0.21 7.28 -35.74 -0.26 -0.47 16 3 C -0.17 -2.29 11.02 -37.45 -0.41 -2.70 16 4 C -0.21 -3.23 5.65 -103.27 -0.58 -3.81 16 5 C 0.58 10.99 7.64 -12.54 -0.10 10.89 16 6 O -0.52 -12.67 16.51 5.27 0.09 -12.59 16 7 N -0.61 -10.18 2.98 -174.02 -0.52 -10.70 16 8 C 0.09 1.10 5.27 -3.71 -0.02 1.09 16 9 C -0.13 -1.54 6.08 -26.61 -0.16 -1.70 16 10 C -0.11 -1.55 4.90 -26.68 -0.13 -1.68 16 11 C -0.11 -1.93 2.10 -90.50 -0.19 -2.12 16 12 H 0.07 1.50 8.05 -51.93 -0.42 1.08 16 13 C 0.17 3.36 2.96 -66.96 -0.20 3.16 16 14 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 15 C -0.13 -2.16 5.20 -24.90 -0.13 -2.29 16 16 C -0.15 -2.83 7.09 -24.58 -0.17 -3.00 16 17 C 0.17 4.20 5.41 -2.53 -0.01 4.18 16 18 N -0.59 -14.81 2.41 -162.58 -0.39 -15.20 16 19 C -0.23 -6.43 9.85 -15.06 -0.15 -6.58 16 20 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 21 C 0.00 0.08 5.47 -17.43 -0.10 -0.01 16 22 N -0.91 -27.54 10.57 55.49 0.59 -26.95 16 23 Si 0.91 23.32 29.55 -169.99 -5.02 18.30 16 24 H -0.28 -7.43 7.11 56.52 0.40 -7.02 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 C 0.13 2.47 5.29 -3.69 -0.02 2.46 16 28 C 0.00 0.01 9.71 30.07 0.29 0.30 16 29 O -0.18 -2.00 10.52 7.64 0.08 -1.92 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.16 2.14 8.06 -52.49 -0.42 1.72 16 34 H 0.08 0.85 4.42 -51.93 -0.23 0.62 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.06 0.77 7.07 -51.93 -0.37 0.40 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.04 5.42 -51.93 -0.28 0.76 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.07 1.88 6.93 -51.93 -0.36 1.52 16 45 H 0.02 0.64 8.06 -51.93 -0.42 0.22 16 46 H 0.25 7.49 8.31 -40.82 -0.34 7.16 16 47 H 0.06 1.09 5.96 -51.93 -0.31 0.78 16 48 H 0.11 2.93 6.62 -51.93 -0.34 2.58 16 49 H 0.21 1.67 6.67 -52.49 -0.35 1.32 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -34.69 378.14 -9.14 -43.83 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.70 Total: 1.93 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.97 Total: -2.41 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: -0.32 Total: -52.85 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.17 Total: -14.50 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.02 Total: 18.30 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.69 -9.14 -43.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963290708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.171 kcal (2) G-P(sol) polarization free energy of solvation -34.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds