Wall clock time and date at job start Tue Mar 31 2020 18:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.34179 * 125.43534 * 2 1 4 4 C 1.47025 * 105.94757 * 180.14715 * 3 2 1 5 5 C 1.47387 * 127.18519 * 179.83434 * 4 3 2 6 6 O 1.21608 * 119.99911 * 31.80251 * 5 4 3 7 7 N 1.34776 * 119.99471 * 211.79724 * 5 4 3 8 8 C 1.46928 * 120.63133 * 6.52352 * 7 5 4 9 9 C 1.53189 * 108.89211 * 126.45962 * 8 7 5 10 10 C 1.53051 * 109.31537 * 54.56336 * 9 8 7 11 11 C 1.53043 * 109.53371 * 298.63407 * 10 9 8 12 12 H 1.08993 * 109.49636 * 301.38003 * 11 10 9 13 13 C 1.52995 * 109.49562 * 181.31636 * 11 10 9 14 14 H 1.08998 * 109.87459 * 61.55060 * 13 11 10 15 15 C 1.54324 * 109.88198 * 300.38027 * 13 11 10 16 16 C 1.55156 * 102.94642 * 218.38852 * 15 13 11 17 17 C 1.54916 * 101.57877 * 35.50288 * 16 15 13 18 18 N 1.47019 * 109.88403 * 182.57653 * 13 11 10 19 19 C 1.36935 * 125.64603 * 298.38994 * 18 13 11 20 20 H 1.08009 * 119.99942 * 345.39991 * 19 18 13 21 21 C 1.38811 * 120.00293 * 165.39552 * 19 18 13 22 22 N 1.31615 * 119.99855 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00159 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47259 * 60.00500 * 23 21 19 25 25 H 1.48499 * 109.47028 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47396 * 300.00480 * 23 21 19 27 27 C 1.46960 * 120.65198 * 186.33504 * 7 5 4 28 28 C 1.36413 * 105.61874 * 359.57605 * 4 3 2 29 29 O 1.33656 * 108.39773 * 0.25661 * 28 4 3 30 30 H 1.09001 * 109.46738 * 180.31108 * 1 2 3 31 31 H 1.08998 * 109.46567 * 300.30838 * 1 2 3 32 32 H 1.08991 * 109.47132 * 60.31000 * 1 2 3 33 33 H 1.07999 * 127.02461 * 359.97438 * 3 2 1 34 34 H 1.08994 * 109.58560 * 6.59888 * 8 7 5 35 35 H 1.09004 * 109.58261 * 246.31774 * 8 7 5 36 36 H 1.09002 * 109.49833 * 174.51062 * 9 8 7 37 37 H 1.08998 * 109.49695 * 294.60953 * 9 8 7 38 38 H 1.09003 * 109.45633 * 58.64935 * 10 9 8 39 39 H 1.08991 * 109.45951 * 178.62924 * 10 9 8 40 40 H 1.09003 * 110.72010 * 336.75458 * 15 13 11 41 41 H 1.09005 * 110.72067 * 100.02445 * 15 13 11 42 42 H 1.08995 * 111.00958 * 277.43023 * 16 15 13 43 43 H 1.09004 * 111.04213 * 153.58486 * 16 15 13 44 44 H 1.08999 * 110.36873 * 204.15220 * 17 16 15 45 45 H 1.08996 * 110.36570 * 81.82811 * 17 16 15 46 46 H 0.97007 * 120.00321 * 179.97438 * 22 21 19 47 47 H 1.09004 * 109.46577 * 113.75525 * 27 7 5 48 48 H 1.08998 * 109.59351 * 353.40167 * 27 7 5 49 49 H 1.08001 * 125.80155 * 180.26590 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2850 1.0932 0.0000 4 6 3.6710 0.6028 -0.0036 5 6 4.9025 1.4125 -0.0084 6 8 4.9205 2.4951 0.5452 7 7 6.0087 0.9530 -0.6263 8 6 5.9644 -0.2831 -1.4192 9 6 6.5131 0.0061 -2.8199 10 6 7.9073 0.6258 -2.6994 11 6 7.8152 1.9480 -1.9342 12 1 7.1397 2.6248 -2.4572 13 6 9.2043 2.5828 -1.8427 14 1 9.5798 2.7983 -2.8430 15 6 10.1705 1.6281 -1.1103 16 6 11.0304 2.5941 -0.2532 17 6 9.9902 3.6739 0.1364 18 7 9.1364 3.8230 -1.0561 19 6 8.4014 4.9327 -1.3776 20 1 7.9976 5.0433 -2.3732 21 6 8.1750 5.9156 -0.4238 22 7 8.6673 5.7811 0.7894 23 14 7.1728 7.4297 -0.8626 24 1 5.8096 7.0165 -1.2823 25 1 7.0778 8.3206 0.3217 26 1 7.8347 8.1559 -1.9759 27 6 7.2813 1.6807 -0.5234 28 6 3.5790 -0.7582 0.0043 29 8 2.2852 -1.0935 0.0063 30 1 -0.3633 -1.0277 0.0056 31 1 -0.3632 0.5186 0.8872 32 1 -0.3633 0.5090 -0.8927 33 1 1.9595 2.1230 -0.0004 34 1 4.9345 -0.6319 -1.4950 35 1 6.5747 -1.0477 -0.9383 36 1 6.5759 -0.9237 -3.3852 37 1 5.8493 0.7010 -3.3343 38 1 8.5640 -0.0592 -2.1631 39 1 8.3100 0.8102 -3.6953 40 1 9.6196 0.9349 -0.4745 41 1 10.7928 1.0874 -1.8234 42 1 11.8390 3.0255 -0.8432 43 1 11.4207 2.0905 0.6313 44 1 10.4888 4.6155 0.3663 45 1 9.3974 3.3398 0.9879 46 1 8.5094 6.4681 1.4558 47 1 8.0005 1.0782 0.0314 48 1 7.1203 2.6277 -0.0082 49 1 4.4103 -1.4476 0.0083 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963290708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:10:46 Heat of formation + Delta-G solvation = -14.044493 kcal Electronic energy + Delta-G solvation = -30121.051703 eV Core-core repulsion = 26242.559438 eV Total energy + Delta-G solvation = -3878.492265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.63882 -41.25715 -39.67026 -37.80510 -34.88962 -34.23923 -33.86997 -32.87638 -32.17170 -31.15395 -28.56611 -27.47487 -26.86594 -26.47450 -24.17302 -23.84372 -22.40293 -21.99136 -21.64929 -20.38803 -19.76137 -18.66547 -18.12746 -17.73430 -17.24817 -17.18115 -16.75900 -16.11237 -15.99773 -15.68935 -15.51342 -15.34613 -14.72168 -14.46687 -14.24254 -14.09295 -14.03768 -13.91336 -13.80840 -13.79022 -13.66779 -13.12841 -12.98457 -12.91488 -12.77845 -12.70492 -12.68933 -12.14803 -12.01440 -11.82667 -11.75434 -11.53335 -11.35456 -11.19628 -11.13646 -11.09097 -10.77789 -10.65229 -9.64662 -9.49932 -8.75035 -7.87421 -5.20246 0.35870 0.98882 1.33711 1.40146 1.43397 1.75830 1.93622 2.19402 2.46087 3.32630 3.44496 3.63536 3.64905 3.87164 3.90170 3.93041 4.09446 4.14610 4.16805 4.30622 4.32395 4.35181 4.40896 4.46909 4.57863 4.62408 4.71914 4.74091 4.79966 4.84362 4.84905 4.92169 4.98486 5.02575 5.04400 5.09100 5.18633 5.23704 5.31860 5.34709 5.38471 5.47024 5.55187 5.60648 5.65263 5.69157 5.81892 5.96507 6.26670 6.41716 7.12694 7.14165 7.83058 8.48310 9.23617 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011795 B = 0.004144 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.412391 B = 6754.825393 C = 8323.042127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.004 3.996 3 C -0.207 4.207 4 C -0.256 4.256 5 C 0.568 3.432 6 O -0.597 6.597 7 N -0.603 5.603 8 C 0.085 3.915 9 C -0.129 4.129 10 C -0.106 4.106 11 C -0.095 4.095 12 H 0.024 0.976 13 C 0.156 3.844 14 H 0.036 0.964 15 C -0.111 4.111 16 C -0.136 4.136 17 C 0.178 3.822 18 N -0.611 5.611 19 C -0.227 4.227 20 H 0.066 0.934 21 C -0.058 4.058 22 N -0.942 5.942 23 Si 0.959 3.041 24 H -0.294 1.294 25 H -0.293 1.293 26 H -0.269 1.269 27 C 0.139 3.861 28 C 0.040 3.960 29 O -0.168 6.168 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.141 0.859 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.042 0.958 38 H 0.090 0.910 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.100 0.900 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.027 0.973 45 H -0.013 1.013 46 H 0.243 0.757 47 H 0.076 0.924 48 H 0.040 0.960 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.012 -23.490 -6.298 25.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.045 4.045 3 C -0.227 4.227 4 C -0.261 4.261 5 C 0.358 3.642 6 O -0.479 6.479 7 N -0.334 5.334 8 C -0.035 4.035 9 C -0.167 4.167 10 C -0.144 4.144 11 C -0.117 4.117 12 H 0.043 0.957 13 C 0.050 3.950 14 H 0.053 0.947 15 C -0.149 4.149 16 C -0.175 4.175 17 C 0.052 3.948 18 N -0.335 5.335 19 C -0.356 4.356 20 H 0.084 0.916 21 C -0.252 4.252 22 N -0.591 5.591 23 Si 0.789 3.211 24 H -0.221 1.221 25 H -0.219 1.219 26 H -0.194 1.194 27 C 0.017 3.983 28 C -0.029 4.029 29 O -0.063 6.063 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.159 0.841 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.135 0.865 37 H 0.061 0.939 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.096 0.904 41 H 0.118 0.882 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.046 0.954 45 H 0.005 0.995 46 H 0.052 0.948 47 H 0.094 0.906 48 H 0.059 0.941 49 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -9.169 -23.016 -5.925 25.474 hybrid contribution -0.428 2.510 0.325 2.567 sum -9.597 -20.506 -5.600 23.323 Atomic orbital electron populations 1.20545 0.81564 1.05729 1.05014 1.22848 0.95539 0.82475 1.03660 1.22574 0.90585 1.00325 1.09222 1.21399 0.93545 0.95052 1.16060 1.18051 0.83359 0.84638 0.78164 1.90838 1.84725 1.24225 1.48087 1.48193 1.08825 1.26806 1.49608 1.22520 1.04138 0.85060 0.91794 1.21921 0.96195 1.02465 0.96075 1.21587 0.97754 0.94547 1.00539 1.21772 0.97814 0.97512 0.94602 0.95737 1.21232 0.93241 0.86029 0.94542 0.94665 1.22649 0.96813 0.96472 0.98940 1.22884 0.97366 0.97059 1.00151 1.21177 0.89891 0.95747 0.87945 1.44704 1.52423 1.11575 1.24803 1.19060 1.24939 0.96570 0.95075 0.91600 1.25518 1.01787 1.02268 0.95587 1.70108 1.50133 1.35125 1.03713 0.85438 0.78687 0.80065 0.76937 1.22121 1.21876 1.19419 1.21373 0.83215 0.95855 0.97891 1.25116 0.84825 0.94076 0.98879 1.83784 1.16448 1.35176 1.70928 0.88374 0.88519 0.88185 0.84104 0.87800 0.87548 0.86509 0.93921 0.89158 0.90823 0.90418 0.88160 0.91680 0.89979 0.95420 0.99490 0.94782 0.90573 0.94130 0.72840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.40 71.24 0.74 -0.06 16 2 C 0.00 0.07 7.28 24.76 0.18 0.25 16 3 C -0.21 -5.94 11.02 23.65 0.26 -5.68 16 4 C -0.26 -7.79 5.65 -18.99 -0.11 -7.89 16 5 C 0.57 23.00 7.64 86.65 0.66 23.66 16 6 O -0.60 -32.64 16.51 -4.06 -0.07 -32.70 16 7 N -0.60 -20.32 2.98 -822.74 -2.45 -22.78 16 8 C 0.09 1.66 5.27 86.36 0.46 2.12 16 9 C -0.13 -2.44 6.08 30.67 0.19 -2.25 16 10 C -0.11 -2.46 4.90 30.63 0.15 -2.31 16 11 C -0.10 -3.50 2.10 -10.72 -0.02 -3.52 16 12 H 0.02 1.10 8.05 -2.39 -0.02 1.08 16 13 C 0.16 6.20 2.96 45.34 0.13 6.33 16 14 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 15 C -0.11 -3.39 5.20 31.78 0.17 -3.23 16 16 C -0.14 -4.91 7.09 31.99 0.23 -4.68 16 17 C 0.18 9.08 5.41 86.86 0.47 9.55 16 18 N -0.61 -32.13 2.41 -668.27 -1.61 -33.74 16 19 C -0.23 -13.60 9.85 84.03 0.83 -12.77 16 20 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 21 C -0.06 -3.60 5.47 84.86 0.46 -3.14 16 22 N -0.94 -61.34 10.57 21.65 0.23 -61.11 16 23 Si 0.96 51.07 29.55 68.60 2.03 53.10 16 24 H -0.29 -15.92 7.11 99.48 0.71 -15.21 16 25 H -0.29 -15.55 7.11 99.48 0.71 -14.84 16 26 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 27 C 0.14 5.60 5.29 86.36 0.46 6.06 16 28 C 0.04 0.79 9.71 67.39 0.65 1.44 16 29 O -0.17 -3.21 10.52 4.43 0.05 -3.17 16 30 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 34 H 0.10 1.64 4.42 -2.39 -0.01 1.62 16 35 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.12 1.26 8.14 -2.39 -0.02 1.25 16 37 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.09 1.66 7.07 -2.39 -0.02 1.64 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 2.19 5.42 -2.39 -0.01 2.18 16 41 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 42 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 43 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 44 H 0.03 1.61 6.93 -2.39 -0.02 1.59 16 45 H -0.01 -0.74 8.06 -2.39 -0.02 -0.76 16 46 H 0.24 15.59 8.31 -92.70 -0.77 14.82 16 47 H 0.08 2.76 5.96 -2.39 -0.01 2.75 16 48 H 0.04 2.27 6.62 -2.39 -0.02 2.25 16 49 H 0.26 2.56 6.67 -2.91 -0.02 2.54 16 Total: -1.00 -90.36 378.14 5.03 -85.34 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: 0.95 Total: 11.19 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 5.91 Total: 3.87 kcal Atomic # 7 Polarization: -113.80 SS G_CDS: -3.83 Total: -117.63 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.02 Total: -35.87 kcal Atomic # 14 Polarization: 51.07 SS G_CDS: 2.03 Total: 53.10 kcal Total: -90.36 5.03 -85.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963290708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.292 kcal (2) G-P(sol) polarization free energy of solvation -90.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds