Wall clock time and date at job start Tue Mar 31 2020 17:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38263 * 119.94680 * 2 1 4 4 C 1.38140 * 120.05825 * 180.02562 * 3 2 1 5 5 C 1.38728 * 119.94495 * 359.97438 * 4 3 2 6 6 O 1.35905 * 120.05493 * 180.02562 * 5 4 3 7 7 C 1.42896 * 116.99472 * 185.21819 * 6 5 4 8 8 H 1.08998 * 109.47783 * 35.34715 * 7 6 5 9 9 C 1.53002 * 109.47497 * 275.34274 * 7 6 5 10 10 C 1.50703 * 109.46937 * 155.34693 * 7 6 5 11 11 O 1.21283 * 119.99736 * 4.99742 * 10 7 6 12 12 N 1.34774 * 120.00338 * 184.99702 * 10 7 6 13 13 C 1.47429 * 125.64806 * 359.97438 * 12 10 7 14 14 C 1.54904 * 104.83532 * 155.90807 * 13 12 10 15 15 C 1.55160 * 101.58242 * 37.00459 * 14 13 12 16 16 H 1.09004 * 110.71605 * 83.04105 * 15 14 13 17 17 N 1.46501 * 110.72220 * 206.13522 * 15 14 13 18 18 C 1.46498 * 119.99983 * 56.16000 * 17 15 14 19 19 C 1.36930 * 119.99909 * 236.15931 * 17 15 14 20 20 H 1.08001 * 120.00584 * 337.80780 * 19 17 15 21 21 C 1.38812 * 119.99814 * 158.08121 * 19 17 15 22 22 N 1.31619 * 120.00393 * 346.14791 * 21 19 17 23 23 Si 1.86806 * 120.00047 * 166.14084 * 21 19 17 24 24 H 1.48503 * 109.46807 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47061 * 120.00196 * 23 21 19 26 26 H 1.48493 * 109.47554 * 240.00394 * 23 21 19 27 27 C 1.47323 * 125.61715 * 180.19913 * 12 10 7 28 28 C 1.38732 * 119.88791 * 0.27360 * 5 4 3 29 29 C 1.38150 * 119.94380 * 359.46998 * 28 5 4 30 30 H 1.08997 * 109.47007 * 90.00264 * 1 2 3 31 31 H 1.09001 * 109.46710 * 210.00491 * 1 2 3 32 32 H 1.08995 * 109.46786 * 329.99962 * 1 2 3 33 33 H 1.08010 * 119.96669 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.02743 * 179.97438 * 4 3 2 35 35 H 1.08999 * 109.46679 * 60.00500 * 9 7 6 36 36 H 1.08990 * 109.47387 * 180.02562 * 9 7 6 37 37 H 1.08998 * 109.46964 * 300.00942 * 9 7 6 38 38 H 1.09002 * 110.36741 * 37.06241 * 13 12 10 39 39 H 1.09001 * 110.36514 * 274.74565 * 13 12 10 40 40 H 1.09001 * 111.00209 * 278.93542 * 14 13 12 41 41 H 1.08998 * 111.04085 * 155.09656 * 14 13 12 42 42 H 1.09001 * 109.47106 * 265.54662 * 18 17 15 43 43 H 1.09003 * 109.46830 * 25.54258 * 18 17 15 44 44 H 1.08996 * 109.47044 * 145.54229 * 18 17 15 45 45 H 0.96997 * 120.00597 * 180.02562 * 22 21 19 46 46 H 1.08998 * 110.06227 * 61.67885 * 27 12 10 47 47 H 1.08998 * 109.85144 * 300.41961 * 27 12 10 48 48 H 1.08001 * 120.02916 * 179.72973 * 28 5 4 49 49 H 1.08001 * 119.97150 * 180.23212 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1980 0.0000 4 6 3.5787 1.2007 -0.0005 5 6 4.2735 0.0000 -0.0005 6 8 5.6325 0.0000 -0.0005 7 6 6.2812 -1.2680 -0.1163 8 1 5.6993 -1.9153 -0.7724 9 6 6.3931 -1.9119 1.2670 10 6 7.6598 -1.0760 -0.6939 11 8 8.0832 0.0428 -0.8938 12 7 8.4224 -2.1476 -0.9884 13 6 8.0345 -3.5569 -0.7966 14 6 8.9049 -4.3485 -1.8042 15 6 10.2424 -3.5643 -1.7439 16 1 10.8449 -3.8941 -0.8974 17 7 10.9872 -3.7125 -2.9967 18 6 10.3617 -3.3425 -4.2688 19 6 12.2678 -4.1968 -2.9787 20 1 12.8562 -4.1345 -2.0751 21 6 12.8120 -4.7626 -4.1235 22 7 12.0317 -5.0842 -5.1335 23 14 14.6519 -5.0677 -4.2307 24 1 15.3016 -4.6221 -2.9720 25 1 14.9024 -6.5178 -4.4301 26 1 15.2141 -4.3064 -5.3749 27 6 9.7832 -2.1037 -1.5510 28 6 3.5787 -1.2008 -0.0057 29 6 2.1972 -1.1981 0.0002 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6558 2.1326 -0.0004 34 1 4.1173 2.1368 -0.0010 35 1 5.3959 -2.0508 1.6848 36 1 6.8882 -2.8788 1.1788 37 1 6.9749 -1.2646 1.9231 38 1 6.9764 -3.6931 -1.0203 39 1 8.2514 -3.8746 0.2233 40 1 8.4751 -4.3113 -2.8052 41 1 9.0414 -5.3795 -1.4780 42 1 9.9137 -4.2259 -4.7239 43 1 9.5892 -2.5946 -4.0898 44 1 11.1168 -2.9318 -4.9390 45 1 12.4119 -5.4799 -5.9333 46 1 10.4558 -1.5913 -0.8631 47 1 9.7701 -1.5893 -2.5119 48 1 4.1173 -2.1369 -0.0102 49 1 1.6559 -2.1327 -0.0001 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980334607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:10:28 Heat of formation + Delta-G solvation = -14.172045 kcal Electronic energy + Delta-G solvation = -28507.575794 eV Core-core repulsion = 24629.077998 eV Total energy + Delta-G solvation = -3878.497796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -40.82671 -39.67253 -38.08334 -37.14362 -34.91113 -32.93530 -31.98042 -31.42003 -30.88546 -29.80189 -27.88948 -26.76627 -26.09467 -25.00956 -23.57084 -22.79635 -22.29996 -21.38176 -19.49664 -19.17377 -18.57926 -17.08079 -16.95717 -16.23229 -15.97715 -15.68232 -15.54532 -15.00282 -14.74527 -14.55206 -14.07617 -13.82908 -13.76790 -13.64267 -13.37973 -13.28819 -13.10353 -12.72898 -12.60779 -12.39364 -12.33498 -12.24100 -11.95700 -11.77285 -11.73650 -11.39940 -11.08990 -11.01264 -10.97949 -10.82003 -10.64223 -10.50997 -10.28304 -9.92702 -9.91781 -9.63317 -9.25135 -8.62547 -8.44479 -8.26161 -6.87728 -5.80839 -3.27207 1.08362 1.16947 2.47926 2.64180 3.34089 3.41501 3.43342 3.46515 3.49757 4.28779 4.42733 4.48277 4.55046 4.61074 4.67639 4.73017 4.91097 4.97046 5.08112 5.11993 5.17470 5.26944 5.30874 5.34302 5.35870 5.45510 5.47685 5.50178 5.62514 5.67949 5.77056 5.79223 5.86509 5.92590 6.04767 6.11444 6.23436 6.31002 6.34955 6.43765 6.53176 6.58044 6.75043 6.80315 7.18933 7.31445 7.61280 7.66729 7.74568 8.22223 8.30576 9.14079 9.76639 10.24726 11.24237 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.028694 B = 0.002140 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.569957 B =13083.337180 C =13261.360558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.130 4.130 3 C -0.080 4.080 4 C -0.146 4.146 5 C 0.129 3.871 6 O -0.285 6.285 7 C 0.072 3.928 8 H 0.096 0.904 9 C -0.179 4.179 10 C 0.529 3.471 11 O -0.523 6.523 12 N -0.608 5.608 13 C 0.095 3.905 14 C -0.151 4.151 15 C 0.173 3.827 16 H 0.080 0.920 17 N -0.586 5.586 18 C 0.159 3.841 19 C -0.260 4.260 20 H 0.071 0.929 21 C 0.004 3.996 22 N -0.904 5.904 23 Si 0.906 3.094 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.088 3.912 28 C -0.208 4.208 29 C -0.079 4.079 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.128 0.872 34 H 0.132 0.868 35 H 0.074 0.926 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.032 0.968 43 H 0.001 0.999 44 H 0.044 0.956 45 H 0.253 0.747 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.130 0.870 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.459 5.250 12.408 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.130 4.130 3 C -0.098 4.098 4 C -0.165 4.165 5 C 0.083 3.917 6 O -0.197 6.197 7 C 0.012 3.988 8 H 0.114 0.886 9 C -0.236 4.236 10 C 0.315 3.685 11 O -0.399 6.399 12 N -0.344 5.344 13 C -0.029 4.029 14 C -0.191 4.191 15 C 0.063 3.937 16 H 0.098 0.902 17 N -0.306 5.306 18 C 0.015 3.985 19 C -0.390 4.390 20 H 0.089 0.911 21 C -0.195 4.195 22 N -0.549 5.549 23 Si 0.736 3.264 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.216 1.216 27 C -0.035 4.035 28 C -0.227 4.227 29 C -0.097 4.097 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.146 0.854 34 H 0.150 0.850 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.050 0.950 43 H 0.020 0.980 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.082 0.918 47 H 0.093 0.907 48 H 0.148 0.852 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -21.044 6.016 12.126 25.022 hybrid contribution 0.907 -0.543 -0.244 1.084 sum -20.138 5.473 11.883 24.014 Atomic orbital electron populations 1.20711 0.91120 1.02544 1.02140 1.19836 0.96203 0.93084 1.03899 1.20845 0.92877 0.97803 0.98322 1.20464 0.93729 0.96491 1.05798 1.19097 0.82276 0.94324 0.95988 1.86213 1.15980 1.30132 1.87420 1.22139 0.92674 0.85171 0.98811 0.88620 1.22396 1.03991 1.02034 0.95195 1.19596 0.85715 0.84194 0.78982 1.90735 1.73050 1.23303 1.52790 1.48454 1.17367 1.05680 1.62860 1.22511 0.99336 0.80961 1.00053 1.23390 0.97543 0.99395 0.98784 1.21300 0.91248 0.89884 0.91312 0.90158 1.43889 1.12932 1.73576 1.00246 1.20805 0.94885 0.96011 0.86805 1.19261 0.88085 1.33344 0.98278 0.91099 1.25013 0.98273 0.98584 0.97608 1.70083 1.33190 1.45064 1.06547 0.86164 0.85098 0.77439 0.77687 1.20238 1.21709 1.21554 1.22901 0.80423 1.01446 0.98768 1.21310 0.95430 0.97175 1.08791 1.20821 0.93181 0.97717 0.98012 0.91448 0.91760 0.91737 0.85415 0.85010 0.90739 0.89715 0.90672 0.91426 0.91157 0.90473 0.90127 0.94966 0.98041 0.93684 0.93682 0.91817 0.90740 0.85224 0.85796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.01 36.01 0.36 -0.28 16 2 C -0.13 -1.11 5.88 -104.60 -0.62 -1.73 16 3 C -0.08 -0.72 9.69 -39.61 -0.38 -1.11 16 4 C -0.15 -1.61 9.99 -39.44 -0.39 -2.00 16 5 C 0.13 1.56 6.60 -39.22 -0.26 1.30 16 6 O -0.29 -4.09 9.34 -39.30 -0.37 -4.46 16 7 C 0.07 0.90 1.99 -27.88 -0.06 0.84 16 8 H 0.10 1.02 5.78 -51.93 -0.30 0.72 16 9 C -0.18 -1.70 9.04 37.16 0.34 -1.37 16 10 C 0.53 8.66 7.24 -10.98 -0.08 8.58 16 11 O -0.52 -10.86 16.83 -14.31 -0.24 -11.10 16 12 N -0.61 -9.40 3.33 -170.28 -0.57 -9.97 16 13 C 0.09 1.15 5.34 -2.53 -0.01 1.14 16 14 C -0.15 -2.35 6.64 -24.58 -0.16 -2.52 16 15 C 0.17 3.27 3.43 -66.09 -0.23 3.04 16 16 H 0.08 1.48 7.93 -51.93 -0.41 1.07 16 17 N -0.59 -13.95 2.93 -171.39 -0.50 -14.46 16 18 C 0.16 3.81 7.57 59.85 0.45 4.26 16 19 C -0.26 -6.86 9.61 -15.06 -0.14 -7.01 16 20 H 0.07 1.82 7.84 -52.49 -0.41 1.41 16 21 C 0.00 0.11 5.08 -17.43 -0.09 0.02 16 22 N -0.90 -25.62 10.70 55.49 0.59 -25.02 16 23 Si 0.91 21.35 29.58 -169.99 -5.03 16.33 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 C 0.09 1.60 6.42 -2.90 -0.02 1.58 16 28 C -0.21 -2.09 8.24 -39.43 -0.32 -2.41 16 29 C -0.08 -0.69 9.69 -39.60 -0.38 -1.08 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 32 H 0.06 0.32 8.08 -51.93 -0.42 -0.10 16 33 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 34 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.07 0.60 6.91 -51.93 -0.36 0.24 16 36 H 0.08 0.68 5.56 -51.93 -0.29 0.39 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.66 7.33 -51.93 -0.38 0.28 16 39 H 0.07 0.71 7.16 -51.93 -0.37 0.34 16 40 H 0.08 1.33 7.19 -51.93 -0.37 0.96 16 41 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 42 H 0.03 0.82 7.40 -51.93 -0.38 0.44 16 43 H 0.00 0.02 6.44 -51.93 -0.33 -0.31 16 44 H 0.04 1.18 7.24 -51.93 -0.38 0.80 16 45 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.07 1.52 6.28 -51.93 -0.33 1.20 16 48 H 0.13 1.09 5.43 -52.49 -0.29 0.80 16 49 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 386.21 15.07 5.82 5.82 Total: -1.00 -32.35 386.21 -9.83 -42.18 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -7.54 Total: -0.60 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: -2.00 Total: 1.28 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: -0.48 Total: -49.45 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.61 Total: -15.56 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.35 -9.83 -42.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980334607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.011 kcal (2) G-P(sol) polarization free energy of solvation -32.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds