Wall clock time and date at job start Tue Mar 31 2020 16:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35716 * 116.99831 * 2 1 4 4 C 1.39014 * 119.91020 * 0.02562 * 3 2 1 5 5 C 1.37690 * 120.08759 * 179.74185 * 4 3 2 6 6 C 1.39750 * 119.90753 * 0.53177 * 5 4 3 7 7 C 1.47600 * 120.08327 * 179.71987 * 6 5 4 8 8 O 1.21587 * 119.99926 * 179.72819 * 7 6 5 9 9 N 1.34778 * 120.00401 * 359.72735 * 7 6 5 10 10 C 1.46499 * 120.00326 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.24504 * 324.65895 * 10 9 7 12 12 C 1.54842 * 109.36171 * 205.00148 * 10 9 7 13 13 C 1.50124 * 110.81724 * 200.92752 * 12 10 9 14 14 C 1.52529 * 105.41472 * 97.68105 * 13 12 10 15 15 C 1.46243 * 114.27473 * 270.59034 * 14 13 12 16 16 N 1.50170 * 107.53210 * 58.41347 * 15 14 13 17 17 C 1.36933 * 120.53876 * 109.56279 * 16 15 14 18 18 H 1.08001 * 119.99952 * 156.67778 * 17 16 15 19 19 C 1.38807 * 120.00199 * 336.68084 * 17 16 15 20 20 N 1.31627 * 120.00085 * 340.30112 * 19 17 16 21 21 Si 1.86797 * 120.00165 * 160.30073 * 19 17 16 22 22 H 1.48498 * 109.47188 * 266.02049 * 21 19 17 23 23 H 1.48503 * 109.47057 * 146.01989 * 21 19 17 24 24 H 1.48494 * 109.47116 * 26.02357 * 21 19 17 25 25 C 1.43436 * 118.92429 * 289.83665 * 16 15 14 26 26 C 1.39703 * 119.82640 * 359.44825 * 6 5 4 27 27 C 1.37720 * 119.91439 * 0.27347 * 26 6 5 28 28 C 1.50700 * 119.95996 * 180.02562 * 27 26 6 29 29 H 1.08997 * 109.47189 * 60.00544 * 1 2 3 30 30 H 1.09006 * 109.46833 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47561 * 300.00174 * 1 2 3 32 32 H 1.08005 * 119.95722 * 359.97438 * 4 3 2 33 33 H 1.07997 * 120.04309 * 180.27664 * 5 4 3 34 34 H 0.96996 * 119.99753 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.20816 * 80.57549 * 12 10 9 36 36 H 1.09003 * 109.20239 * 321.26631 * 12 10 9 37 37 H 1.08998 * 110.25016 * 338.70622 * 13 12 10 38 38 H 1.09001 * 110.36922 * 216.71486 * 13 12 10 39 39 H 1.08995 * 108.52238 * 149.35457 * 14 13 12 40 40 H 1.08997 * 108.40305 * 31.74386 * 14 13 12 41 41 H 1.08990 * 109.84758 * 298.90085 * 15 14 13 42 42 H 1.08997 * 109.89745 * 177.94930 * 15 14 13 43 43 H 0.96996 * 120.00447 * 179.97438 * 20 19 17 44 44 H 1.08991 * 108.16323 * 213.03339 * 25 16 15 45 45 H 1.09001 * 108.15805 * 329.60206 * 25 16 15 46 46 H 1.08001 * 120.04919 * 180.24847 * 26 6 5 47 47 H 1.09000 * 109.47566 * 89.99920 * 28 27 26 48 48 H 1.09009 * 109.46839 * 209.99770 * 28 27 26 49 49 H 1.09003 * 109.46957 * 329.99481 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2861 2.3739 0.0005 5 6 1.9073 3.6027 0.0059 6 6 3.3028 3.6780 -0.0004 7 6 3.9728 4.9932 -0.0009 8 8 5.1870 5.0569 -0.0015 9 7 3.2387 6.1235 -0.0009 10 6 3.9037 7.4289 -0.0020 11 1 4.8152 7.3682 0.5926 12 6 2.9575 8.4875 0.6157 13 6 3.3544 9.8712 0.1897 14 6 2.4376 10.2138 -0.9802 15 6 2.9596 9.8203 -2.2884 16 7 3.1913 8.3369 -2.2554 17 6 2.3906 7.4915 -2.9759 18 1 2.7542 6.5153 -3.2608 19 6 1.1115 7.8891 -3.3401 20 7 0.5200 8.8733 -2.6966 21 14 0.2296 7.0275 -4.7434 22 1 0.4612 7.7739 -6.0061 23 1 -1.2268 6.9789 -4.4572 24 1 0.7532 5.6449 -4.8825 25 6 4.2613 7.8196 -1.4524 26 6 4.0619 2.5052 -0.0005 27 6 3.4331 1.2800 -0.0001 28 6 4.2510 0.0142 0.0004 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 0.2077 2.3149 0.0005 33 1 1.3170 4.5070 0.0108 34 1 2.2701 6.0727 -0.0008 35 1 3.0042 8.4196 1.7026 36 1 1.9366 8.2905 0.2884 37 1 4.3960 9.8829 -0.1313 38 1 3.2040 10.5774 1.0062 39 1 2.2693 11.2907 -0.9843 40 1 1.4808 9.7155 -0.8250 41 1 3.8992 10.3374 -2.4827 42 1 2.2354 10.0645 -3.0655 43 1 -0.3737 9.1514 -2.9513 44 1 4.6615 6.9354 -1.9483 45 1 5.0518 8.5691 -1.4161 46 1 5.1406 2.5592 -0.0013 47 1 4.4482 -0.2906 1.0282 48 1 3.7005 -0.7742 -0.5131 49 1 5.1956 0.1919 -0.5135 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034452425.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:50 Heat of formation + Delta-G solvation = -24.881941 kcal Electronic energy + Delta-G solvation = -29653.132458 eV Core-core repulsion = 25774.170246 eV Total energy + Delta-G solvation = -3878.962212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 5.78 seconds Orbital eigenvalues (eV) -40.47493 -39.32681 -37.84915 -36.89024 -34.23324 -33.26246 -32.80125 -31.02752 -30.52798 -29.58507 -27.82454 -26.77781 -26.04181 -24.31614 -23.23996 -22.54299 -21.86341 -20.19825 -19.42261 -19.15692 -18.09152 -17.04906 -16.63680 -16.48420 -15.96727 -15.30560 -15.03743 -14.73828 -14.61218 -14.23935 -13.95948 -13.80059 -13.65054 -13.51883 -13.19354 -13.18166 -12.60350 -12.35818 -12.23169 -12.15929 -12.10999 -11.76663 -11.74842 -11.54620 -11.30449 -11.10131 -10.86750 -10.80092 -10.74875 -10.46560 -10.09496 -9.96115 -9.71044 -9.46687 -9.33675 -9.24506 -8.88670 -8.61220 -8.35034 -8.10757 -6.69526 -5.81367 -3.19439 1.03307 1.32376 3.09078 3.14982 3.34567 3.42702 3.45086 3.74985 4.05850 4.48420 4.64034 4.72895 4.90779 4.95497 5.07392 5.20644 5.27688 5.28417 5.32002 5.39654 5.48687 5.50086 5.59581 5.62325 5.66921 5.85027 5.95979 6.08759 6.15030 6.22241 6.24817 6.27030 6.30742 6.46588 6.47135 6.54327 6.63887 6.67445 6.87506 6.93783 6.99032 7.05132 7.21753 7.26938 7.27395 7.61294 7.74388 7.98528 8.13429 8.41537 8.77637 9.18273 9.85598 10.39054 11.25156 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.011780 B = 0.003942 C = 0.003281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.250215 B = 7101.496793 C = 8532.710636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.313 6.313 3 C 0.143 3.857 4 C -0.212 4.212 5 C -0.045 4.045 6 C -0.158 4.158 7 C 0.557 3.443 8 O -0.557 6.557 9 N -0.696 5.696 10 C 0.118 3.882 11 H 0.072 0.928 12 C -0.110 4.110 13 C -0.112 4.112 14 C -0.130 4.130 15 C 0.164 3.836 16 N -0.583 5.583 17 C -0.237 4.237 18 H 0.064 0.936 19 C 0.002 3.998 20 N -0.900 5.900 21 Si 0.894 3.106 22 H -0.289 1.289 23 H -0.294 1.294 24 H -0.281 1.281 25 C 0.151 3.849 26 C -0.026 4.026 27 C -0.130 4.130 28 C -0.102 4.102 29 H 0.058 0.942 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.399 0.601 35 H 0.038 0.962 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.049 0.951 39 H 0.024 0.976 40 H 0.100 0.900 41 H 0.005 0.995 42 H 0.089 0.911 43 H 0.251 0.749 44 H 0.038 0.962 45 H 0.036 0.964 46 H 0.141 0.859 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.088 -11.427 8.184 14.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.226 6.226 3 C 0.097 3.903 4 C -0.231 4.231 5 C -0.064 4.064 6 C -0.162 4.162 7 C 0.344 3.656 8 O -0.437 6.437 9 N -0.345 5.345 10 C 0.010 3.990 11 H 0.091 0.909 12 C -0.148 4.148 13 C -0.150 4.150 14 C -0.169 4.169 15 C 0.041 3.959 16 N -0.304 5.304 17 C -0.367 4.367 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.724 3.276 22 H -0.217 1.217 23 H -0.220 1.220 24 H -0.206 1.206 25 C 0.020 3.980 26 C -0.045 4.045 27 C -0.131 4.131 28 C -0.158 4.158 29 H 0.076 0.924 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.234 0.766 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.043 0.957 40 H 0.119 0.881 41 H 0.023 0.977 42 H 0.107 0.893 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.055 0.945 46 H 0.159 0.841 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.851 -11.474 8.116 14.080 hybrid contribution -1.567 -0.224 -0.711 1.735 sum -0.716 -11.698 7.405 13.863 Atomic orbital electron populations 1.23092 0.78311 1.03892 1.01706 1.86004 1.21412 1.26956 1.88253 1.19046 0.91806 0.84134 0.95272 1.21139 1.00186 0.91990 1.09771 1.21177 0.93584 0.97629 0.94034 1.19971 0.93542 0.94079 1.08576 1.18028 0.86879 0.83943 0.76711 1.90714 1.13552 1.87643 1.51804 1.45930 1.10241 1.05575 1.72748 1.22722 0.94894 0.80886 1.00472 0.90950 1.21672 1.00881 0.94680 0.97582 1.20973 1.00141 0.95384 0.98530 1.21006 1.01684 0.98554 0.95624 1.20174 0.96308 0.82323 0.97117 1.44257 1.34940 1.01841 1.49320 1.19183 0.93426 0.98635 1.25445 0.91795 1.24840 0.95829 0.99067 0.99823 1.69971 1.13614 1.31312 1.39686 0.86398 0.78628 0.79294 0.83239 1.21662 1.22035 1.20631 1.20701 0.91007 0.97073 0.89202 1.20971 1.00526 0.89527 0.93465 1.19164 0.90456 0.96140 1.07335 1.20583 0.98878 0.94165 1.02205 0.92371 0.88273 0.92485 0.84979 0.84978 0.76571 0.94279 0.90245 0.92413 0.93264 0.95695 0.88149 0.97677 0.89320 0.93862 0.94404 0.94538 0.84113 0.91488 0.91263 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.57 9.52 -18.85 -0.18 -3.75 16 3 C 0.14 1.86 6.67 -39.02 -0.26 1.60 16 4 C -0.21 -2.71 9.01 -39.49 -0.36 -3.07 16 5 C -0.05 -0.65 9.53 -39.22 -0.37 -1.03 16 6 C -0.16 -2.57 5.87 -104.97 -0.62 -3.18 16 7 C 0.56 10.45 7.58 -12.44 -0.09 10.35 16 8 O -0.56 -11.87 16.00 5.29 0.08 -11.79 16 9 N -0.70 -12.73 5.03 -53.17 -0.27 -13.00 16 10 C 0.12 2.23 2.91 -66.22 -0.19 2.04 16 11 H 0.07 1.38 7.57 -51.93 -0.39 0.98 16 12 C -0.11 -1.96 5.23 -27.19 -0.14 -2.10 16 13 C -0.11 -1.98 5.76 -28.40 -0.16 -2.14 16 14 C -0.13 -2.65 5.02 -30.18 -0.15 -2.81 16 15 C 0.16 3.71 5.25 -5.20 -0.03 3.68 16 16 N -0.58 -13.72 2.61 -175.41 -0.46 -14.18 16 17 C -0.24 -6.10 9.62 -15.06 -0.14 -6.25 16 18 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 19 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 20 N -0.90 -23.47 9.43 55.49 0.52 -22.94 16 21 Si 0.89 20.95 29.60 -169.99 -5.03 15.92 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C 0.15 3.21 4.75 -4.92 -0.02 3.19 16 26 C -0.03 -0.39 9.23 -39.22 -0.36 -0.75 16 27 C -0.13 -1.73 5.89 -104.54 -0.62 -2.34 16 28 C -0.10 -1.07 9.78 36.01 0.35 -0.72 16 29 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.39 7.65 -51.93 -0.40 -0.01 16 32 H 0.13 1.37 6.28 -52.48 -0.33 1.04 16 33 H 0.13 1.80 6.40 -52.49 -0.34 1.46 16 34 H 0.40 6.98 6.46 -40.82 -0.26 6.72 16 35 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 1.60 6.58 -51.93 -0.34 1.26 16 37 H 0.06 1.01 6.28 -51.93 -0.33 0.68 16 38 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.10 2.33 5.28 -51.93 -0.27 2.06 16 41 H 0.01 0.11 8.13 -51.93 -0.42 -0.31 16 42 H 0.09 2.24 6.06 -51.93 -0.31 1.93 16 43 H 0.25 6.50 8.31 -40.82 -0.34 6.16 16 44 H 0.04 0.89 7.80 -51.93 -0.41 0.48 16 45 H 0.04 0.74 6.89 -51.93 -0.36 0.39 16 46 H 0.14 2.04 7.64 -52.49 -0.40 1.64 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.07 0.71 7.52 -51.92 -0.39 0.32 16 49 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 LS Contribution 379.53 15.07 5.72 5.72 Total: -1.00 -29.08 379.53 -9.31 -38.39 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -7.43 Total: 8.02 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -2.27 Total: -2.38 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.20 Total: -50.13 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.09 Total: -15.54 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.08 -9.31 -38.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034452425.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.504 kcal (2) G-P(sol) polarization free energy of solvation -29.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.78 seconds