Wall clock time and date at job start Tue Mar 31 2020 17:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.34515 * 125.78824 * 2 1 4 4 C 1.41378 * 106.83829 * 179.75060 * 3 2 1 5 5 C 1.34514 * 106.84358 * 0.37033 * 4 3 2 6 6 C 1.50696 * 125.79070 * 179.89200 * 5 4 3 7 7 C 1.50698 * 109.47218 * 89.71551 * 6 5 4 8 8 O 1.21280 * 119.99997 * 359.97438 * 7 6 5 9 9 N 1.34786 * 119.99908 * 180.02562 * 7 6 5 10 10 C 1.47084 * 125.62925 * 0.02612 * 9 7 6 11 11 C 1.54451 * 107.29914 * 179.01074 * 10 9 7 12 12 C 1.54395 * 102.86882 * 338.50140 * 11 10 9 13 13 C 1.47572 * 125.62689 * 180.02562 * 9 7 6 14 14 C 1.52110 * 110.51371 * 276.65225 * 12 11 10 15 15 C 1.53339 * 109.45113 * 295.89109 * 14 12 11 16 16 N 1.46931 * 108.69206 * 306.70916 * 15 14 12 17 17 C 1.36937 * 120.55653 * 234.32103 * 16 15 14 18 18 H 1.07999 * 119.99291 * 27.98881 * 17 16 15 19 19 C 1.38806 * 120.00102 * 207.98336 * 17 16 15 20 20 N 1.31614 * 120.00216 * 17.47852 * 19 17 16 21 21 Si 1.86803 * 120.00037 * 197.47441 * 19 17 16 22 22 H 1.48498 * 109.47047 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47168 * 120.00093 * 21 19 17 24 24 H 1.48500 * 109.46965 * 240.00497 * 21 19 17 25 25 C 1.46933 * 118.88805 * 54.35190 * 16 15 14 26 26 C 1.52111 * 110.50549 * 152.62805 * 12 11 10 27 27 O 1.34301 * 125.78989 * 179.97438 * 2 1 3 28 28 H 1.08996 * 109.47092 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47206 * 300.00393 * 1 2 3 30 30 H 1.08998 * 109.46972 * 59.99953 * 1 2 3 31 31 H 1.07997 * 126.58175 * 359.97438 * 3 2 1 32 32 H 1.08001 * 126.58072 * 180.23831 * 4 3 2 33 33 H 1.09004 * 109.47401 * 329.71430 * 6 5 4 34 34 H 1.08996 * 109.46943 * 209.71846 * 6 5 4 35 35 H 1.08995 * 109.87920 * 59.58053 * 10 9 7 36 36 H 1.09002 * 109.99590 * 298.50776 * 10 9 7 37 37 H 1.08997 * 110.73619 * 220.15624 * 11 10 9 38 38 H 1.09002 * 110.73259 * 96.84194 * 11 10 9 39 39 H 1.08997 * 110.37412 * 84.48853 * 13 9 7 40 40 H 1.09001 * 110.37447 * 322.14366 * 13 9 7 41 41 H 1.08995 * 109.47373 * 55.88484 * 14 12 11 42 42 H 1.09003 * 109.47391 * 175.89520 * 14 12 11 43 43 H 1.09000 * 109.60225 * 186.94396 * 15 14 12 44 44 H 1.09007 * 109.59987 * 66.47100 * 15 14 12 45 45 H 0.96998 * 120.00763 * 179.97438 * 20 19 17 46 46 H 1.09004 * 109.60024 * 185.88529 * 25 16 15 47 47 H 1.08993 * 109.74222 * 65.47894 * 25 16 15 48 48 H 1.09003 * 109.47331 * 184.09369 * 26 12 11 49 49 H 1.09001 * 109.47356 * 304.10186 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6308 0.6321 0.0059 5 6 3.5814 -0.7122 0.0008 6 6 4.7706 -1.6378 0.0019 7 6 5.1660 -1.9460 1.4231 8 8 4.5437 -1.4612 2.3443 9 7 6.2119 -2.7594 1.6703 10 6 7.0504 -3.4104 0.6522 11 6 8.1330 -4.2207 1.3984 12 6 8.1769 -3.5413 2.7842 13 6 6.7047 -3.1439 3.0071 14 6 9.0665 -2.3081 2.7453 15 6 10.5104 -2.7293 2.4466 16 7 10.9096 -3.7610 3.4136 17 6 12.0402 -3.6057 4.1704 18 1 12.3922 -2.6152 4.4181 19 6 12.7338 -4.7213 4.6190 20 7 12.5297 -5.8933 4.0561 21 14 13.9569 -4.5590 6.0215 22 1 14.0029 -3.1464 6.4772 23 1 13.5361 -5.4297 7.1484 24 1 15.3044 -4.9717 5.5534 25 6 10.0756 -4.9625 3.5546 26 6 8.6343 -4.5284 3.8473 27 8 2.2925 -1.0894 0.0005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.9666 2.1204 -0.0004 32 1 4.5212 1.2433 0.0111 33 1 5.6044 -1.1588 -0.5115 34 1 4.5110 -2.5633 -0.5119 35 1 7.5209 -2.6559 0.0218 36 1 6.4434 -4.0780 0.0406 37 1 9.0959 -4.1333 0.8952 38 1 7.8378 -5.2660 1.4904 39 1 6.1369 -3.9912 3.3916 40 1 6.6392 -2.2994 3.6931 41 1 8.7165 -1.6320 1.9653 42 1 9.0278 -1.8016 3.7097 43 1 11.1697 -1.8663 2.5395 44 1 10.5720 -3.1323 1.4356 45 1 13.0146 -6.6729 4.3693 46 1 10.4482 -5.5717 4.3781 47 1 10.1030 -5.5402 2.6308 48 1 8.5896 -4.0534 4.8274 49 1 7.9823 -5.4018 3.8367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040677607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:14 Heat of formation + Delta-G solvation = -20.048994 kcal Electronic energy + Delta-G solvation = -28876.057293 eV Core-core repulsion = 24997.304653 eV Total energy + Delta-G solvation = -3878.752640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 2.26 seconds Orbital eigenvalues (eV) -43.55188 -41.56101 -39.79803 -37.38381 -34.79688 -34.15409 -33.91360 -32.71743 -31.61698 -30.88909 -30.58629 -28.53803 -26.35060 -25.37586 -24.13441 -23.73971 -22.80382 -22.51828 -21.24217 -20.40310 -19.61475 -18.60534 -18.00068 -17.59049 -17.05893 -16.96027 -16.84754 -16.25730 -15.72243 -15.68207 -15.28179 -15.08692 -14.99503 -14.53249 -14.35783 -14.27024 -13.96460 -13.79553 -13.75249 -13.62765 -13.57917 -13.42864 -13.16257 -13.01036 -12.95639 -12.59410 -12.55216 -12.50071 -12.31155 -12.02911 -11.85391 -11.78679 -11.41391 -11.20426 -11.08521 -10.97794 -10.79364 -10.49137 -9.66062 -9.21247 -8.62382 -7.85779 -5.29123 0.68813 1.44924 1.48075 1.54676 1.57322 1.59321 1.89382 2.16372 2.51940 3.26490 3.41472 3.58219 3.63834 3.75491 3.84952 3.88047 3.99451 4.12452 4.22141 4.30277 4.32174 4.39672 4.43055 4.54347 4.57173 4.62074 4.69003 4.72229 4.78339 4.79457 4.86467 4.89514 4.92834 4.96388 5.04897 5.06726 5.10176 5.19453 5.27637 5.29958 5.34909 5.41025 5.45965 5.57881 5.64252 5.68461 5.83667 6.21211 6.42242 6.49702 7.07505 7.18560 7.91130 8.40652 9.19801 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.036126 B = 0.002174 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.888007 B =12878.666207 C =13014.152585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.026 4.026 3 C -0.228 4.228 4 C -0.207 4.207 5 C -0.018 4.018 6 C -0.047 4.047 7 C 0.524 3.476 8 O -0.587 6.587 9 N -0.611 5.611 10 C 0.101 3.899 11 C -0.119 4.119 12 C -0.052 4.052 13 C 0.121 3.879 14 C -0.103 4.103 15 C 0.145 3.855 16 N -0.610 5.610 17 C -0.259 4.259 18 H 0.060 0.940 19 C -0.048 4.048 20 N -0.930 5.930 21 Si 0.959 3.041 22 H -0.271 1.271 23 H -0.291 1.291 24 H -0.292 1.292 25 C 0.181 3.819 26 C -0.115 4.115 27 O -0.192 6.192 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.136 0.864 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.074 0.926 42 H 0.041 0.959 43 H 0.046 0.954 44 H 0.030 0.970 45 H 0.249 0.751 46 H 0.048 0.952 47 H 0.011 0.989 48 H 0.042 0.958 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.570 8.519 -13.365 25.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.076 4.076 3 C -0.247 4.247 4 C -0.226 4.226 5 C -0.068 4.068 6 C -0.086 4.086 7 C 0.314 3.686 8 O -0.468 6.468 9 N -0.344 5.344 10 C -0.020 4.020 11 C -0.157 4.157 12 C -0.053 4.053 13 C -0.002 4.002 14 C -0.142 4.142 15 C 0.020 3.980 16 N -0.333 5.333 17 C -0.390 4.390 18 H 0.078 0.922 19 C -0.244 4.244 20 N -0.576 5.576 21 Si 0.788 3.212 22 H -0.195 1.195 23 H -0.218 1.218 24 H -0.219 1.219 25 C 0.056 3.944 26 C -0.154 4.154 27 O -0.090 6.090 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.184 0.816 32 H 0.175 0.825 33 H 0.173 0.827 34 H 0.153 0.847 35 H 0.111 0.889 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.048 0.952 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.029 0.971 48 H 0.061 0.939 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.974 8.395 -12.882 26.006 hybrid contribution 1.197 -0.031 1.274 1.748 sum -19.777 8.363 -11.608 24.409 Atomic orbital electron populations 1.20476 0.82576 1.04701 1.05055 1.23208 0.95603 0.83780 1.05022 1.21861 0.92525 1.00468 1.09799 1.21846 0.99218 0.94028 1.07479 1.21894 0.82963 0.94627 1.07316 1.20176 0.93731 1.01226 0.93449 1.20647 0.78699 0.77354 0.91892 1.90720 1.54304 1.53521 1.48214 1.48597 1.30216 1.46799 1.08760 1.22356 0.92069 0.97113 0.90511 1.22653 0.99261 0.99477 0.94285 1.20855 0.92373 0.95783 0.96301 1.22148 0.93699 0.99386 0.84972 1.21650 0.95618 0.96116 1.00830 1.21074 0.93750 0.91382 0.91809 1.44298 1.25228 1.20189 1.43604 1.19480 1.02249 0.92232 1.25006 0.92185 1.25678 1.00110 0.96282 1.02331 1.70154 1.45383 0.99922 1.42166 0.85325 0.78580 0.77617 0.79640 1.19536 1.21814 1.21875 1.20571 0.87357 0.88028 0.98457 1.21847 0.98022 0.98132 0.97447 1.83912 1.16876 1.36281 1.71937 0.90345 0.88589 0.87527 0.81617 0.82473 0.82734 0.84652 0.88896 0.88389 0.89811 0.90133 0.91367 0.92525 0.90752 0.93970 0.93543 0.95188 0.94154 0.93328 0.97110 0.93902 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.42 71.24 0.74 -0.09 16 2 C -0.03 -0.55 7.32 24.83 0.18 -0.37 16 3 C -0.23 -4.70 10.81 22.19 0.24 -4.46 16 4 C -0.21 -4.64 10.81 22.19 0.24 -4.40 16 5 C -0.02 -0.42 5.81 24.83 0.14 -0.28 16 6 C -0.05 -0.81 5.42 29.10 0.16 -0.65 16 7 C 0.52 13.52 7.84 87.65 0.69 14.21 16 8 O -0.59 -21.21 16.30 -3.03 -0.05 -21.26 16 9 N -0.61 -14.24 3.32 -812.59 -2.70 -16.93 16 10 C 0.10 1.70 6.11 86.76 0.53 2.23 16 11 C -0.12 -2.78 4.92 31.56 0.16 -2.63 16 12 C -0.05 -1.52 0.55 -51.92 -0.03 -1.55 16 13 C 0.12 3.35 5.81 86.55 0.50 3.86 16 14 C -0.10 -3.28 4.85 30.41 0.15 -3.13 16 15 C 0.15 5.60 6.21 86.41 0.54 6.14 16 16 N -0.61 -29.38 2.98 -698.49 -2.08 -31.46 16 17 C -0.26 -14.08 9.57 84.03 0.80 -13.28 16 18 H 0.06 3.24 7.89 -2.91 -0.02 3.22 16 19 C -0.05 -2.68 4.90 84.86 0.42 -2.26 16 20 N -0.93 -53.79 11.20 21.65 0.24 -53.54 16 21 Si 0.96 44.77 29.59 68.60 2.03 46.80 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 25 C 0.18 8.24 5.05 86.41 0.44 8.67 16 26 C -0.11 -4.06 4.84 30.42 0.15 -3.91 16 27 O -0.19 -4.88 10.65 -2.46 -0.03 -4.91 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 32 H 0.16 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.16 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 2.14 6.17 -2.39 -0.01 2.13 16 38 H 0.08 1.83 7.98 -2.39 -0.02 1.81 16 39 H 0.07 1.87 7.99 -2.39 -0.02 1.85 16 40 H 0.06 1.80 7.94 -2.39 -0.02 1.78 16 41 H 0.07 2.01 7.82 -2.39 -0.02 1.99 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 43 H 0.05 1.82 7.93 -2.39 -0.02 1.80 16 44 H 0.03 1.11 6.55 -2.38 -0.02 1.09 16 45 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 46 H 0.05 2.58 6.01 -2.38 -0.01 2.57 16 47 H 0.01 0.50 7.62 -2.39 -0.02 0.49 16 48 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.07 2.22 8.09 -2.39 -0.02 2.20 16 Total: -1.00 -74.18 386.31 4.39 -69.79 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.93 Total: 13.40 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 6.04 Total: -1.90 kcal Atomic # 7 Polarization: -97.40 SS G_CDS: -4.54 Total: -101.94 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.08 Total: -26.16 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -74.18 4.39 -69.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040677607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.745 kcal (2) G-P(sol) polarization free energy of solvation -74.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.26 seconds