Wall clock time and date at job start Tue Mar 31 2020 17:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47337 * 2 1 4 4 C 1.53006 * 109.46971 * 119.99722 * 2 1 3 5 5 C 1.52998 * 109.46839 * 65.00401 * 4 2 1 6 6 C 1.52999 * 109.47174 * 174.11633 * 5 4 2 7 7 H 1.09004 * 109.69763 * 291.94842 * 6 5 4 8 8 C 1.53189 * 109.58755 * 52.30268 * 6 5 4 9 9 C 1.53042 * 109.31477 * 174.42716 * 8 6 5 10 10 C 1.53041 * 109.53770 * 298.63411 * 9 8 6 11 11 C 1.53201 * 109.31221 * 61.36556 * 10 9 8 12 12 N 1.46922 * 109.59144 * 171.59373 * 6 5 4 13 13 S 1.65605 * 120.62781 * 6.62818 * 12 6 5 14 14 O 1.42092 * 106.40427 * 15.55224 * 13 12 6 15 15 O 1.42104 * 106.40258 * 148.47702 * 13 12 6 16 16 N 1.65608 * 107.21456 * 262.01368 * 13 12 6 17 17 C 1.46497 * 119.99942 * 91.69660 * 16 13 12 18 18 C 1.46499 * 120.00007 * 271.69503 * 16 13 12 19 19 C 1.50702 * 109.47215 * 94.99784 * 18 16 13 20 20 H 1.08005 * 119.99901 * 0.02562 * 19 18 16 21 21 C 1.37874 * 120.00136 * 179.97438 * 19 18 16 22 22 N 1.31517 * 120.00033 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00108 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47054 * 89.99334 * 23 21 19 25 25 H 1.48498 * 109.47427 * 209.99917 * 23 21 19 26 26 H 1.48506 * 109.47008 * 330.00101 * 23 21 19 27 27 H 1.08999 * 109.46954 * 60.00467 * 1 2 3 28 28 H 1.09000 * 109.47112 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47365 * 300.00127 * 1 2 3 30 30 H 1.08997 * 109.47365 * 239.99873 * 2 1 3 31 31 H 1.09000 * 109.47364 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46804 * 300.00223 * 3 2 1 33 33 H 1.09005 * 109.46953 * 59.99343 * 3 2 1 34 34 H 1.08995 * 109.47150 * 305.00424 * 4 2 1 35 35 H 1.08997 * 109.47205 * 184.99691 * 4 2 1 36 36 H 1.08996 * 109.48046 * 54.11176 * 5 4 2 37 37 H 1.09005 * 109.47460 * 294.10837 * 5 4 2 38 38 H 1.09001 * 109.50195 * 54.47602 * 8 6 5 39 39 H 1.08994 * 109.50075 * 294.37467 * 8 6 5 40 40 H 1.08997 * 109.46042 * 58.65282 * 9 8 6 41 41 H 1.08996 * 109.46254 * 178.61455 * 9 8 6 42 42 H 1.08996 * 109.50070 * 181.31174 * 10 9 8 43 43 H 1.08999 * 109.50139 * 301.38623 * 10 9 8 44 44 H 1.09000 * 109.58646 * 65.14582 * 11 10 9 45 45 H 1.08995 * 109.58707 * 185.57784 * 11 10 9 46 46 H 1.09002 * 109.47324 * 84.58789 * 17 16 13 47 47 H 1.09001 * 109.47123 * 204.59316 * 17 16 13 48 48 H 1.09001 * 109.47012 * 324.59019 * 17 16 13 49 49 H 1.08998 * 109.47375 * 214.99823 * 18 16 13 50 50 H 1.09005 * 109.47015 * 335.00471 * 18 16 13 51 51 H 0.96995 * 119.99826 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1880 6 6 2.2682 -2.9473 2.3606 7 1 3.3493 -2.9904 2.2288 8 6 1.9389 -2.2255 3.6711 9 6 2.4548 -3.0550 4.8493 10 6 1.7580 -4.4175 4.8600 11 6 2.0852 -5.1642 3.5629 12 7 1.7248 -4.3109 2.4224 13 16 0.7255 -4.8758 1.2287 14 8 0.8688 -3.9854 0.1307 15 8 0.9650 -6.2732 1.1327 16 7 -0.8302 -4.7041 1.7699 17 6 -1.5799 -3.4821 1.4687 18 6 -1.4568 -5.7743 2.5498 19 6 -1.2950 -5.4853 4.0200 20 1 -0.7775 -4.5934 4.3412 21 6 -1.8084 -6.3590 4.9549 22 7 -1.6676 -6.1065 6.2379 23 14 -2.7039 -7.9013 4.3993 24 1 -1.7313 -9.0146 4.2578 25 1 -3.7318 -8.2670 5.4067 26 1 -3.3604 -7.6485 3.0914 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6053 -0.2617 2.1370 35 1 3.1263 -0.6444 1.2952 36 1 1.9812 -2.6286 0.2496 37 1 0.5499 -2.2771 1.2475 38 1 0.8593 -2.1029 3.7577 39 1 2.4184 -1.2467 3.6778 40 1 3.5307 -3.1982 4.7490 41 1 2.2437 -2.5318 5.7818 42 1 2.1087 -4.9988 5.7127 43 1 0.6801 -4.2743 4.9358 44 1 3.1515 -5.3880 3.5292 45 1 1.5136 -6.0912 3.5208 46 1 -2.0366 -3.5696 0.4828 47 1 -2.3582 -3.3392 2.2183 48 1 -0.9027 -2.6281 1.4808 49 1 -2.5175 -5.8292 2.3049 50 1 -0.9791 -6.7248 2.3117 51 1 -2.0284 -6.7214 6.8956 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128449708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:29 Heat of formation + Delta-G solvation = -76.050675 kcal Electronic energy + Delta-G solvation = -30352.998866 eV Core-core repulsion = 26607.261762 eV Total energy + Delta-G solvation = -3745.737103 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -38.89313 -37.04225 -36.27946 -35.61368 -35.26185 -32.59137 -32.32761 -31.88078 -28.44271 -28.33116 -27.10633 -25.25491 -24.25118 -23.67810 -21.96840 -21.33141 -20.04447 -19.70969 -18.27439 -17.40126 -16.88402 -16.21485 -16.02208 -15.17295 -14.68334 -14.51377 -14.34335 -14.09944 -13.93792 -13.71503 -13.60373 -13.30811 -13.16887 -12.88825 -12.76926 -12.52341 -12.32076 -12.25513 -11.98158 -11.89813 -11.73419 -11.40625 -11.36611 -11.27717 -11.23046 -10.88610 -10.78066 -10.76118 -10.63467 -10.43987 -10.42634 -10.26976 -10.19383 -10.04913 -9.91315 -9.50920 -9.27198 -8.66562 -8.48764 -8.02994 -6.17009 -4.17282 1.26622 3.25110 3.31852 3.36230 3.45414 4.09864 4.34105 4.68301 4.91559 4.93112 4.98210 5.11922 5.14631 5.17047 5.29923 5.40312 5.54126 5.57239 5.62522 5.63228 5.70928 5.76605 5.80850 5.85432 5.88433 5.93946 5.98543 6.01297 6.10022 6.11783 6.15038 6.24304 6.26449 6.32338 6.39300 6.42365 6.46088 6.52927 6.53707 6.66171 6.77446 6.82604 6.90280 7.07490 7.14910 7.15639 7.43974 7.58391 8.41256 8.89392 9.44045 10.93817 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015118 B = 0.004881 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.655997 B = 5735.126186 C = 6207.716327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.146 4.146 4 C -0.113 4.113 5 C -0.156 4.156 6 C 0.159 3.841 7 H 0.068 0.932 8 C -0.127 4.127 9 C -0.114 4.114 10 C -0.141 4.141 11 C 0.136 3.864 12 N -0.996 5.996 13 S 2.780 3.220 14 O -0.989 6.989 15 O -0.987 6.987 16 N -0.991 5.991 17 C 0.101 3.899 18 C 0.212 3.788 19 C -0.544 4.544 20 H 0.093 0.907 21 C 0.079 3.921 22 N -0.890 5.890 23 Si 0.864 3.136 24 H -0.273 1.273 25 H -0.286 1.286 26 H -0.265 1.265 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.104 0.896 44 H 0.053 0.947 45 H 0.092 0.908 46 H 0.043 0.957 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.034 0.966 50 H 0.040 0.960 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.942 10.990 -7.280 14.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.151 4.151 5 C -0.194 4.194 6 C 0.052 3.948 7 H 0.086 0.914 8 C -0.166 4.166 9 C -0.151 4.151 10 C -0.179 4.179 11 C 0.011 3.989 12 N -0.835 5.835 13 S 2.791 3.209 14 O -0.973 6.973 15 O -0.971 6.971 16 N -0.832 5.832 17 C -0.045 4.045 18 C 0.088 3.912 19 C -0.583 4.583 20 H 0.110 0.890 21 C -0.124 4.124 22 N -0.528 5.528 23 Si 0.691 3.309 24 H -0.198 1.198 25 H -0.211 1.211 26 H -0.190 1.190 27 H 0.067 0.933 28 H 0.083 0.917 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.133 0.867 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.122 0.878 44 H 0.071 0.929 45 H 0.111 0.889 46 H 0.062 0.938 47 H 0.094 0.906 48 H 0.078 0.922 49 H 0.052 0.948 50 H 0.058 0.942 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.141 10.508 -7.940 14.982 hybrid contribution -0.699 -0.717 0.510 1.124 sum 6.441 9.791 -7.430 13.876 Atomic orbital electron populations 1.21915 0.95351 1.02496 1.01087 1.21087 0.96064 0.95467 0.98748 1.21854 1.00636 0.96508 1.01389 1.21710 1.00390 0.95378 0.97594 1.22999 1.02139 0.94744 0.99516 1.20991 0.97631 0.80729 0.95419 0.91411 1.21978 1.02045 0.98021 0.94536 1.21461 0.99179 0.96882 0.97622 1.22080 1.04508 0.94935 0.96407 1.21266 0.99397 0.93331 0.84939 1.58122 1.63771 1.21809 1.39827 1.02029 0.72564 0.72647 0.73665 1.93628 1.85981 1.64679 1.53015 1.93537 1.84878 1.32286 1.86412 1.57454 1.30253 1.25929 1.69530 1.21429 0.97279 0.85607 1.00233 1.19615 0.94432 0.85376 0.91783 1.21623 1.38052 1.10186 0.88398 0.88968 1.24809 0.95353 0.97494 0.94768 1.69874 1.45583 1.37185 1.00140 0.87026 0.80379 0.84472 0.78991 1.19804 1.21142 1.18956 0.93280 0.91659 0.92957 0.91163 0.93009 0.93086 0.92890 0.91932 0.92295 0.86666 0.90507 0.91271 0.91620 0.93016 0.92430 0.91747 0.87760 0.92870 0.88938 0.93809 0.90551 0.92158 0.94774 0.94238 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.95 37.16 0.33 -1.31 16 2 C -0.10 -1.02 2.92 -90.62 -0.26 -1.28 16 3 C -0.15 -1.32 9.19 37.16 0.34 -0.98 16 4 C -0.11 -1.26 3.91 -26.73 -0.10 -1.36 16 5 C -0.16 -2.16 2.73 -26.73 -0.07 -2.23 16 6 C 0.16 2.28 3.13 -67.60 -0.21 2.07 16 7 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 8 C -0.13 -1.73 4.60 -26.61 -0.12 -1.85 16 9 C -0.11 -1.63 5.88 -26.69 -0.16 -1.78 16 10 C -0.14 -2.46 6.08 -26.61 -0.16 -2.62 16 11 C 0.14 2.41 6.35 -3.70 -0.02 2.38 16 12 N -1.00 -17.16 3.35 -106.47 -0.36 -17.52 16 13 S 2.78 54.05 5.65 -107.50 -0.61 53.44 16 14 O -0.99 -18.39 11.90 -57.17 -0.68 -19.07 16 15 O -0.99 -22.48 15.73 -57.17 -0.90 -23.38 16 16 N -0.99 -19.59 3.23 -123.05 -0.40 -19.98 16 17 C 0.10 1.66 10.24 59.85 0.61 2.27 16 18 C 0.21 4.82 4.46 -5.19 -0.02 4.80 16 19 C -0.54 -13.56 9.72 -34.44 -0.33 -13.90 16 20 H 0.09 2.38 5.24 -52.48 -0.28 2.10 16 21 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 22 N -0.89 -24.62 13.96 55.43 0.77 -23.84 16 23 Si 0.86 20.31 27.47 -169.99 -4.67 15.64 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.26 -6.02 6.54 56.52 0.37 -5.65 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.79 6.26 -51.93 -0.33 0.47 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.68 6.83 -51.93 -0.35 0.32 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.12 1.78 5.89 -52.51 -0.31 1.47 16 37 H 0.08 1.13 2.45 -51.93 -0.13 1.01 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 0.75 6.83 -51.93 -0.35 0.40 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.10 2.20 5.00 -51.93 -0.26 1.94 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.09 1.88 7.36 -51.93 -0.38 1.50 16 46 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.08 1.26 8.03 -51.93 -0.42 0.84 16 48 H 0.06 0.89 4.43 -51.93 -0.23 0.66 16 49 H 0.03 0.77 7.17 -51.93 -0.37 0.40 16 50 H 0.04 0.95 6.36 -51.93 -0.33 0.62 16 51 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 379.82 15.07 5.72 5.72 Total: -1.00 -28.36 379.82 -10.22 -38.58 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -8.82 Total: 4.23 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -0.29 Total: -13.82 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.02 Total: -61.34 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -1.58 Total: -42.46 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.67 Total: 15.64 kcal Atomic # 16 Polarization: 54.05 SS G_CDS: -0.61 Total: 53.44 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -28.36 -10.22 -38.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128449708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.471 kcal (2) G-P(sol) polarization free energy of solvation -28.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds