Wall clock time and date at job start Tue Mar 31 2020 17:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47337 * 2 1 4 4 C 1.53006 * 109.46971 * 119.99722 * 2 1 3 5 5 C 1.52998 * 109.46839 * 65.00401 * 4 2 1 6 6 C 1.52999 * 109.47174 * 174.11633 * 5 4 2 7 7 H 1.09004 * 109.69763 * 291.94842 * 6 5 4 8 8 C 1.53189 * 109.58755 * 52.30268 * 6 5 4 9 9 C 1.53042 * 109.31477 * 174.42716 * 8 6 5 10 10 C 1.53041 * 109.53770 * 298.63411 * 9 8 6 11 11 C 1.53201 * 109.31221 * 61.36556 * 10 9 8 12 12 N 1.46922 * 109.59144 * 171.59373 * 6 5 4 13 13 S 1.65605 * 120.62781 * 6.62818 * 12 6 5 14 14 O 1.42092 * 106.40427 * 15.55224 * 13 12 6 15 15 O 1.42104 * 106.40258 * 148.47702 * 13 12 6 16 16 N 1.65608 * 107.21456 * 262.01368 * 13 12 6 17 17 C 1.46497 * 119.99942 * 91.69660 * 16 13 12 18 18 C 1.46499 * 120.00007 * 271.69503 * 16 13 12 19 19 C 1.50702 * 109.47215 * 94.99784 * 18 16 13 20 20 H 1.08005 * 119.99901 * 0.02562 * 19 18 16 21 21 C 1.37874 * 120.00136 * 179.97438 * 19 18 16 22 22 N 1.31517 * 120.00033 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00108 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47054 * 89.99334 * 23 21 19 25 25 H 1.48498 * 109.47427 * 209.99917 * 23 21 19 26 26 H 1.48506 * 109.47008 * 330.00101 * 23 21 19 27 27 H 1.08999 * 109.46954 * 60.00467 * 1 2 3 28 28 H 1.09000 * 109.47112 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47365 * 300.00127 * 1 2 3 30 30 H 1.08997 * 109.47365 * 239.99873 * 2 1 3 31 31 H 1.09000 * 109.47364 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46804 * 300.00223 * 3 2 1 33 33 H 1.09005 * 109.46953 * 59.99343 * 3 2 1 34 34 H 1.08995 * 109.47150 * 305.00424 * 4 2 1 35 35 H 1.08997 * 109.47205 * 184.99691 * 4 2 1 36 36 H 1.08996 * 109.48046 * 54.11176 * 5 4 2 37 37 H 1.09005 * 109.47460 * 294.10837 * 5 4 2 38 38 H 1.09001 * 109.50195 * 54.47602 * 8 6 5 39 39 H 1.08994 * 109.50075 * 294.37467 * 8 6 5 40 40 H 1.08997 * 109.46042 * 58.65282 * 9 8 6 41 41 H 1.08996 * 109.46254 * 178.61455 * 9 8 6 42 42 H 1.08996 * 109.50070 * 181.31174 * 10 9 8 43 43 H 1.08999 * 109.50139 * 301.38623 * 10 9 8 44 44 H 1.09000 * 109.58646 * 65.14582 * 11 10 9 45 45 H 1.08995 * 109.58707 * 185.57784 * 11 10 9 46 46 H 1.09002 * 109.47324 * 84.58789 * 17 16 13 47 47 H 1.09001 * 109.47123 * 204.59316 * 17 16 13 48 48 H 1.09001 * 109.47012 * 324.59019 * 17 16 13 49 49 H 1.08998 * 109.47375 * 214.99823 * 18 16 13 50 50 H 1.09005 * 109.47015 * 335.00471 * 18 16 13 51 51 H 0.96995 * 119.99826 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1880 6 6 2.2682 -2.9473 2.3606 7 1 3.3493 -2.9904 2.2288 8 6 1.9389 -2.2255 3.6711 9 6 2.4548 -3.0550 4.8493 10 6 1.7580 -4.4175 4.8600 11 6 2.0852 -5.1642 3.5629 12 7 1.7248 -4.3109 2.4224 13 16 0.7255 -4.8758 1.2287 14 8 0.8688 -3.9854 0.1307 15 8 0.9650 -6.2732 1.1327 16 7 -0.8302 -4.7041 1.7699 17 6 -1.5799 -3.4821 1.4687 18 6 -1.4568 -5.7743 2.5498 19 6 -1.2950 -5.4853 4.0200 20 1 -0.7775 -4.5934 4.3412 21 6 -1.8084 -6.3590 4.9549 22 7 -1.6676 -6.1065 6.2379 23 14 -2.7039 -7.9013 4.3993 24 1 -1.7313 -9.0146 4.2578 25 1 -3.7318 -8.2670 5.4067 26 1 -3.3604 -7.6485 3.0914 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8899 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6053 -0.2617 2.1370 35 1 3.1263 -0.6444 1.2952 36 1 1.9812 -2.6286 0.2496 37 1 0.5499 -2.2771 1.2475 38 1 0.8593 -2.1029 3.7577 39 1 2.4184 -1.2467 3.6778 40 1 3.5307 -3.1982 4.7490 41 1 2.2437 -2.5318 5.7818 42 1 2.1087 -4.9988 5.7127 43 1 0.6801 -4.2743 4.9358 44 1 3.1515 -5.3880 3.5292 45 1 1.5136 -6.0912 3.5208 46 1 -2.0366 -3.5696 0.4828 47 1 -2.3582 -3.3392 2.2183 48 1 -0.9027 -2.6281 1.4808 49 1 -2.5175 -5.8292 2.3049 50 1 -0.9791 -6.7248 2.3117 51 1 -2.0284 -6.7214 6.8956 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128449708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:28 Heat of formation + Delta-G solvation = -92.640902 kcal Electronic energy + Delta-G solvation = -30353.718272 eV Core-core repulsion = 26607.261762 eV Total energy + Delta-G solvation = -3746.456510 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.10456 -38.54075 -37.35041 -37.23202 -36.85139 -34.44322 -33.62859 -33.13483 -30.22111 -29.43691 -27.91252 -26.79793 -25.37376 -24.96427 -23.77184 -22.48918 -21.34874 -20.64468 -19.77580 -19.01000 -18.71420 -17.67920 -17.47662 -16.51668 -16.11513 -15.78075 -15.59298 -15.49136 -15.29480 -15.03308 -14.75586 -14.68357 -14.38480 -14.27879 -14.16155 -14.08383 -13.78613 -13.36928 -13.20496 -13.11520 -13.03691 -12.95713 -12.89409 -12.84419 -12.50604 -12.33601 -12.15190 -12.03714 -11.96961 -11.89287 -11.68401 -11.51130 -11.35293 -11.19807 -11.09037 -11.02458 -10.71535 -10.65184 -9.85721 -9.63731 -8.20638 -6.22610 -0.26004 1.35967 1.41090 1.46276 1.95777 2.37922 2.59146 3.12770 3.40833 3.54071 3.90456 3.96939 4.11652 4.14783 4.18507 4.23805 4.30008 4.38351 4.48883 4.55179 4.57736 4.69674 4.74385 4.83070 4.85067 4.87704 4.92820 4.94252 4.96774 4.98366 4.99595 5.11002 5.13940 5.16280 5.20928 5.30568 5.34007 5.36682 5.42309 5.44946 5.49621 5.54215 5.56764 5.63560 5.65538 5.76471 5.78667 5.99482 6.41345 6.87713 7.40478 8.91877 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015118 B = 0.004881 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1851.655997 B = 5735.126186 C = 6207.716327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.097 4.097 3 C -0.142 4.142 4 C -0.107 4.107 5 C -0.153 4.153 6 C 0.153 3.847 7 H 0.090 0.910 8 C -0.121 4.121 9 C -0.108 4.108 10 C -0.136 4.136 11 C 0.137 3.863 12 N -0.994 5.994 13 S 2.784 3.216 14 O -0.981 6.981 15 O -1.024 7.024 16 N -0.997 5.997 17 C 0.094 3.906 18 C 0.217 3.783 19 C -0.531 4.531 20 H 0.080 0.920 21 C 0.034 3.966 22 N -0.926 5.926 23 Si 0.907 3.093 24 H -0.276 1.276 25 H -0.283 1.283 26 H -0.251 1.251 27 H 0.055 0.945 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.100 0.900 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.040 0.960 50 H 0.026 0.974 51 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.046 12.910 -8.097 17.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.115 4.115 3 C -0.200 4.200 4 C -0.145 4.145 5 C -0.192 4.192 6 C 0.047 3.953 7 H 0.108 0.892 8 C -0.160 4.160 9 C -0.146 4.146 10 C -0.175 4.175 11 C 0.011 3.989 12 N -0.835 5.835 13 S 2.795 3.205 14 O -0.965 6.965 15 O -1.008 7.008 16 N -0.837 5.837 17 C -0.051 4.051 18 C 0.092 3.908 19 C -0.570 4.570 20 H 0.098 0.902 21 C -0.166 4.166 22 N -0.566 5.566 23 Si 0.733 3.267 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.175 1.175 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.092 0.908 48 H 0.095 0.905 49 H 0.058 0.942 50 H 0.044 0.956 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.232 12.448 -8.790 17.319 hybrid contribution -0.987 -1.234 0.733 1.742 sum 7.245 11.214 -8.057 15.593 Atomic orbital electron populations 1.21925 0.95749 1.01556 1.01762 1.21096 0.95777 0.96551 0.98114 1.21810 1.01117 0.95150 1.01900 1.21683 1.01461 0.93176 0.98182 1.22904 1.01310 0.96640 0.98345 1.21311 0.98743 0.79075 0.96131 0.89200 1.21955 1.01163 0.99281 0.93568 1.21431 1.00078 0.94734 0.98308 1.21950 1.02308 0.97135 0.96075 1.21222 1.00281 0.92164 0.85210 1.57993 1.63322 1.23152 1.38987 1.01838 0.72578 0.71930 0.74107 1.93668 1.85842 1.63837 1.53200 1.93485 1.85380 1.34825 1.87127 1.57436 1.30852 1.26318 1.69102 1.21639 0.97489 0.84898 1.01041 1.19379 0.94756 0.85851 0.90805 1.21810 1.36399 1.09283 0.89508 0.90246 1.25403 0.96454 0.99913 0.94848 1.69976 1.47268 1.38306 1.01031 0.86318 0.79509 0.81610 0.79267 1.20210 1.20839 1.17515 0.92550 0.93350 0.92417 0.92069 0.92225 0.92605 0.92408 0.91146 0.90683 0.88222 0.91703 0.93174 0.88394 0.90698 0.91882 0.92245 0.91691 0.90218 0.92362 0.92045 0.90817 0.90490 0.94192 0.95623 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 8.95 71.98 0.64 -2.39 16 2 C -0.10 -1.83 2.92 -10.79 -0.03 -1.86 16 3 C -0.14 -2.13 9.19 71.98 0.66 -1.46 16 4 C -0.11 -2.07 3.91 30.60 0.12 -1.95 16 5 C -0.15 -3.95 2.73 30.59 0.08 -3.86 16 6 C 0.15 4.03 3.13 44.97 0.14 4.18 16 7 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 8 C -0.12 -2.98 4.60 30.67 0.14 -2.84 16 9 C -0.11 -2.85 5.88 30.62 0.18 -2.67 16 10 C -0.14 -4.76 6.08 30.68 0.19 -4.58 16 11 C 0.14 4.83 6.35 86.36 0.55 5.38 16 12 N -0.99 -33.54 3.35 -490.77 -1.64 -35.19 16 13 S 2.78 108.08 5.65 -56.49 -0.32 107.76 16 14 O -0.98 -35.78 11.90 -128.00 -1.52 -37.31 16 15 O -1.02 -47.42 15.73 -128.00 -2.01 -49.43 16 16 N -1.00 -39.45 3.23 -543.22 -1.75 -41.20 16 17 C 0.09 3.04 10.24 127.77 1.31 4.35 16 18 C 0.22 9.98 4.46 85.63 0.38 10.36 16 19 C -0.53 -27.06 9.72 25.60 0.25 -26.81 16 20 H 0.08 4.23 5.24 -2.91 -0.02 4.22 16 21 C 0.03 1.80 5.47 84.65 0.46 2.26 16 22 N -0.93 -52.52 13.96 21.45 0.30 -52.22 16 23 Si 0.91 42.04 27.47 68.60 1.88 43.93 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 1.11 6.26 -2.39 -0.01 1.10 16 29 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.07 1.27 6.83 -2.39 -0.02 1.26 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.10 2.92 5.89 -11.56 -0.07 2.85 16 37 H 0.06 1.82 2.45 -2.38 -0.01 1.82 16 38 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.10 1.83 6.83 -2.39 -0.02 1.81 16 40 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.06 2.83 5.00 -2.39 -0.01 2.82 16 44 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.06 2.45 7.36 -2.39 -0.02 2.44 16 46 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.07 2.40 8.03 -2.39 -0.02 2.38 16 48 H 0.08 2.22 4.43 -2.39 -0.01 2.21 16 49 H 0.04 1.79 7.17 -2.39 -0.02 1.77 16 50 H 0.03 1.26 6.36 -2.38 -0.02 1.25 16 51 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -61.93 379.82 0.80 -61.13 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.79 Total: 24.43 kcal Atomic # 6 Polarization: -26.97 SS G_CDS: 5.08 Total: -21.89 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -3.10 Total: -128.61 kcal Atomic # 8 Polarization: -83.20 SS G_CDS: -3.54 Total: -86.74 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.88 Total: 43.93 kcal Atomic # 16 Polarization: 108.08 SS G_CDS: -0.32 Total: 107.76 kcal Total: -61.93 0.80 -61.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128449708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.515 kcal (2) G-P(sol) polarization free energy of solvation -61.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds