Wall clock time and date at job start Tue Mar 31 2020 17:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47501 * 2 1 4 4 C 1.50701 * 109.47027 * 120.00737 * 2 1 3 5 5 C 1.40361 * 126.64561 * 300.14301 * 4 2 1 6 6 C 1.35133 * 107.11276 * 180.23020 * 5 4 2 7 7 O 1.33928 * 108.76680 * 359.78420 * 6 5 4 8 8 C 1.34907 * 109.38657 * 359.97438 * 7 6 5 9 9 C 1.46656 * 125.98904 * 179.97438 * 8 7 6 10 10 O 1.21697 * 120.00500 * 173.59545 * 9 8 7 11 11 N 1.34781 * 119.99849 * 353.87202 * 9 8 7 12 12 C 1.46881 * 120.46604 * 4.72378 * 11 9 8 13 13 C 1.52854 * 109.01894 * 235.48702 * 12 11 9 14 14 C 1.52662 * 109.17900 * 307.81844 * 13 12 11 15 15 C 1.53484 * 113.62533 * 188.98992 * 14 13 12 16 16 N 1.47666 * 85.99015 * 137.71068 * 15 14 13 17 17 C 1.36937 * 134.45631 * 155.69878 * 16 15 14 18 18 H 1.08000 * 119.99704 * 185.08775 * 17 16 15 19 19 C 1.38807 * 120.00133 * 5.09948 * 17 16 15 20 20 N 1.31621 * 119.99990 * 354.98625 * 19 17 16 21 21 Si 1.86801 * 120.00122 * 174.99154 * 19 17 16 22 22 H 1.48496 * 109.47321 * 94.99295 * 21 19 17 23 23 H 1.48499 * 109.47164 * 214.99532 * 21 19 17 24 24 H 1.48506 * 109.46783 * 334.99294 * 21 19 17 25 25 C 1.47666 * 91.08686 * 335.68054 * 16 15 14 26 26 C 1.52673 * 113.18636 * 57.45811 * 14 13 12 27 27 C 1.46878 * 120.46723 * 185.00167 * 11 9 8 28 28 H 1.09000 * 109.47218 * 59.99252 * 1 2 3 29 29 H 1.09002 * 109.47655 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46570 * 299.99683 * 1 2 3 31 31 H 1.09010 * 109.46570 * 240.00317 * 2 1 3 32 32 H 1.08997 * 109.47319 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47034 * 300.00843 * 3 2 1 34 34 H 1.09002 * 109.46359 * 60.00567 * 3 2 1 35 35 H 1.08003 * 126.44406 * 359.97438 * 5 4 2 36 36 H 1.08000 * 125.61496 * 179.81031 * 6 5 4 37 37 H 1.09001 * 109.58963 * 355.31354 * 12 11 9 38 38 H 1.09004 * 109.58868 * 115.74735 * 12 11 9 39 39 H 1.08999 * 109.61248 * 187.83714 * 13 12 11 40 40 H 1.09005 * 109.44636 * 67.69675 * 13 12 11 41 41 H 1.09005 * 113.78832 * 251.97593 * 15 14 13 42 42 H 1.08994 * 113.78953 * 23.43780 * 15 14 13 43 43 H 0.96999 * 119.99914 * 180.02562 * 20 19 17 44 44 H 1.08989 * 113.79106 * 270.05293 * 25 16 15 45 45 H 1.08995 * 113.79069 * 138.57697 * 25 16 15 46 46 H 1.08998 * 109.53622 * 182.51994 * 26 14 13 47 47 H 1.09008 * 109.59252 * 62.33427 * 26 14 13 48 48 H 1.08998 * 109.58976 * 244.25884 * 27 11 9 49 49 H 1.09000 * 109.58740 * 4.68881 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7106 1.2304 5 6 1.7784 -0.3565 2.5646 6 6 2.4210 -1.2545 3.3436 7 8 3.0477 -2.1378 2.5557 8 6 2.8200 -1.8254 1.2632 9 6 3.3341 -2.5519 0.0975 10 8 2.9667 -2.2452 -1.0214 11 7 4.2094 -3.5629 0.2658 12 6 4.5761 -4.0137 1.6148 13 6 6.0959 -3.9505 1.7652 14 6 6.7463 -4.7007 0.6056 15 6 8.2607 -4.8902 0.7677 16 7 8.0376 -6.2626 0.2707 17 6 8.8207 -7.1948 -0.3561 18 1 8.3867 -8.1228 -0.6979 19 6 10.1724 -6.9471 -0.5519 20 7 10.6813 -5.7781 -0.2251 21 14 11.2691 -8.2728 -1.2795 22 1 11.3822 -8.0717 -2.7464 23 1 12.6178 -8.1927 -0.6633 24 1 10.6789 -9.6080 -1.0069 25 6 6.6316 -6.2272 0.7208 26 6 6.3407 -4.1597 -0.7633 27 6 4.8146 -4.2254 -0.8970 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6768 1.9561 0.8901 35 1 1.1847 0.4792 2.9048 36 1 2.4277 -1.2594 4.4235 37 1 4.1098 -3.3649 2.3563 38 1 4.2397 -5.0402 1.7612 39 1 6.3898 -4.4116 2.7081 40 1 6.4188 -2.9094 1.7525 41 1 8.8557 -4.2708 0.0965 42 1 8.6009 -4.8470 1.8023 43 1 11.6258 -5.6049 -0.3623 44 1 6.4877 -6.5814 1.7415 45 1 5.9318 -6.6703 0.0124 46 1 6.8013 -4.7636 -1.5450 47 1 6.6706 -3.1252 -0.8599 48 1 4.4953 -5.2670 -0.9314 49 1 4.5054 -3.7160 -1.8097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035774174.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:46 Heat of formation + Delta-G solvation = 39.423527 kcal Electronic energy + Delta-G solvation = -29566.511329 eV Core-core repulsion = 25690.337611 eV Total energy + Delta-G solvation = -3876.173718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.97469 -40.12834 -38.65226 -36.57778 -35.53020 -32.54485 -32.08934 -31.24092 -30.61565 -29.49564 -27.27586 -26.87238 -25.08214 -24.25472 -23.48315 -22.84698 -22.32065 -21.17382 -20.56467 -19.37803 -18.00862 -17.01358 -16.70811 -16.45056 -16.44178 -15.81338 -15.07743 -14.80094 -14.78478 -14.64369 -14.14585 -14.01684 -13.76310 -13.56251 -13.36406 -13.32081 -13.06017 -12.84149 -12.39738 -12.38932 -12.13133 -11.94251 -11.67429 -11.40136 -11.38958 -11.14714 -11.06003 -10.97765 -10.84189 -10.81202 -10.34580 -10.12816 -9.90151 -9.88300 -9.71713 -9.50081 -9.31792 -8.84690 -8.76831 -8.40073 -6.83289 -5.75726 -3.06479 0.95412 2.18640 2.49359 3.06678 3.18438 3.39593 3.45141 3.46922 4.37354 4.45842 4.47741 4.59370 4.93197 5.05126 5.07479 5.09279 5.14014 5.25121 5.28104 5.36217 5.39418 5.46671 5.47036 5.50494 5.55352 5.66562 5.67752 5.79933 5.83469 5.90190 5.91391 5.92730 6.10416 6.10929 6.16874 6.22334 6.28148 6.32700 6.35422 6.46151 6.62711 6.65190 6.76467 6.83038 6.87556 7.26272 7.37844 7.41513 7.60698 8.00597 8.06338 9.06964 9.73213 10.64199 11.41621 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.026901 B = 0.002622 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.595615 B =10676.182324 C =11045.903992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.052 4.052 3 C -0.139 4.139 4 C -0.078 4.078 5 C -0.219 4.219 6 C -0.019 4.019 7 O -0.153 6.153 8 C -0.076 4.076 9 C 0.599 3.401 10 O -0.527 6.527 11 N -0.593 5.593 12 C 0.092 3.908 13 C -0.116 4.116 14 C -0.111 4.111 15 C 0.176 3.824 16 N -0.609 5.609 17 C -0.222 4.222 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.919 5.919 21 Si 0.907 3.093 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.126 3.874 26 C -0.096 4.096 27 C 0.114 3.886 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.110 0.890 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.151 0.849 36 H 0.206 0.794 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.026 0.974 43 H 0.253 0.747 44 H 0.031 0.969 45 H 0.040 0.960 46 H 0.089 0.911 47 H 0.061 0.939 48 H 0.071 0.929 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.793 12.534 6.883 24.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.070 4.070 3 C -0.196 4.196 4 C -0.081 4.081 5 C -0.238 4.238 6 C -0.088 4.088 7 O -0.050 6.050 8 C -0.127 4.127 9 C 0.387 3.613 10 O -0.407 6.407 11 N -0.324 5.324 12 C -0.030 4.030 13 C -0.155 4.155 14 C -0.112 4.112 15 C 0.050 3.950 16 N -0.335 5.335 17 C -0.349 4.349 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.566 5.566 21 Si 0.738 3.262 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.000 4.000 26 C -0.135 4.135 27 C -0.007 4.007 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.128 0.872 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.169 0.831 36 H 0.223 0.777 37 H 0.124 0.876 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.063 0.937 44 H 0.049 0.951 45 H 0.058 0.942 46 H 0.107 0.893 47 H 0.079 0.921 48 H 0.089 0.911 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.473 12.264 6.221 23.839 hybrid contribution 0.766 -0.673 0.146 1.030 sum -18.707 11.590 6.367 22.909 Atomic orbital electron populations 1.21754 0.94293 1.01843 1.01528 1.20001 0.95724 0.95717 0.95578 1.21776 1.01260 0.95000 1.01578 1.20549 0.97098 0.94540 0.95952 1.21625 1.06528 1.03357 0.92262 1.24506 0.96367 0.90637 0.97257 1.84252 1.58177 1.46469 1.16094 1.21931 1.07492 1.00994 0.82276 1.16723 0.79129 0.79395 0.86028 1.90774 1.59741 1.67111 1.23081 1.48042 1.42300 1.33384 1.08681 1.22292 0.96954 1.00873 0.82852 1.21726 0.93433 1.01054 0.99313 1.22423 0.99537 0.95446 0.93778 1.22179 0.89392 0.86590 0.96797 1.45937 1.07142 1.14202 1.66212 1.19003 0.89637 0.97049 1.29243 0.90385 1.24783 0.96544 0.97294 1.01792 1.69834 1.12576 1.21080 1.53155 0.86172 0.80361 0.81144 0.78539 1.21639 1.21691 1.20698 1.22592 0.88596 0.92251 0.96530 1.21500 0.93085 1.01334 0.97536 1.21785 0.93770 0.97284 0.87911 0.92266 0.92685 0.92926 0.87203 0.92639 0.92237 0.92877 0.83093 0.77706 0.87604 0.91026 0.90600 0.91884 0.91277 0.95639 0.93721 0.95140 0.94190 0.89282 0.92059 0.91078 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.09 37.16 0.34 -0.89 16 2 C -0.05 -0.56 3.19 -91.77 -0.29 -0.86 16 3 C -0.14 -1.28 9.09 37.16 0.34 -0.94 16 4 C -0.08 -0.90 4.87 -104.43 -0.51 -1.41 16 5 C -0.22 -1.94 10.41 -39.89 -0.42 -2.35 16 6 C -0.02 -0.15 12.08 29.63 0.36 0.20 16 7 O -0.15 -1.68 7.05 5.02 0.04 -1.65 16 8 C -0.08 -0.98 6.86 -36.80 -0.25 -1.23 16 9 C 0.60 8.97 7.65 -12.86 -0.10 8.87 16 10 O -0.53 -8.91 13.85 5.19 0.07 -8.84 16 11 N -0.59 -8.52 2.95 -174.51 -0.51 -9.04 16 12 C 0.09 1.18 6.18 -3.91 -0.02 1.16 16 13 C -0.12 -1.68 5.24 -26.98 -0.14 -1.83 16 14 C -0.11 -1.97 0.77 -154.42 -0.12 -2.09 16 15 C 0.18 4.05 6.58 -3.16 -0.02 4.03 16 16 N -0.61 -15.29 3.53 -179.76 -0.63 -15.92 16 17 C -0.22 -6.17 10.70 -15.06 -0.16 -6.33 16 18 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 20 N -0.92 -27.21 11.47 55.49 0.64 -26.58 16 21 Si 0.91 22.17 29.56 -169.99 -5.02 17.15 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.13 2.50 7.73 -3.14 -0.02 2.47 16 26 C -0.10 -1.65 5.21 -26.72 -0.14 -1.79 16 27 C 0.11 1.70 6.29 -3.66 -0.02 1.68 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.40 8.05 -51.92 -0.42 -0.01 16 31 H 0.11 1.47 5.51 -51.92 -0.29 1.18 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.42 8.06 -51.93 -0.42 0.00 16 35 H 0.15 1.00 8.06 -52.48 -0.42 0.57 16 36 H 0.21 0.81 8.06 -52.49 -0.42 0.38 16 37 H 0.11 1.25 3.68 -55.74 -0.20 1.04 16 38 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 39 H 0.08 1.05 8.12 -51.93 -0.42 0.63 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.78 7.25 -51.93 -0.38 1.40 16 42 H 0.03 0.61 8.09 -51.93 -0.42 0.19 16 43 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.03 0.59 8.07 -51.94 -0.42 0.17 16 45 H 0.04 0.76 7.41 -51.93 -0.38 0.38 16 46 H 0.09 1.73 8.01 -51.93 -0.42 1.31 16 47 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 48 H 0.07 1.03 7.49 -51.93 -0.39 0.64 16 49 H 0.09 1.37 7.00 -51.93 -0.36 1.01 16 LS Contribution 383.10 15.07 5.77 5.77 Total: -1.00 -32.17 383.10 -8.81 -40.98 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.87 Total: -0.25 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -1.28 Total: -1.62 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.51 Total: -51.54 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.11 Total: -10.49 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.17 -8.81 -40.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035774174.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.399 kcal (2) G-P(sol) polarization free energy of solvation -32.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds