Wall clock time and date at job start Tue Mar 31 2020 17:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47501 * 2 1 4 4 C 1.50701 * 109.47027 * 120.00737 * 2 1 3 5 5 C 1.40361 * 126.64561 * 300.14301 * 4 2 1 6 6 C 1.35133 * 107.11276 * 180.23020 * 5 4 2 7 7 O 1.33928 * 108.76680 * 359.78420 * 6 5 4 8 8 C 1.34907 * 109.38657 * 359.97438 * 7 6 5 9 9 C 1.46656 * 125.98904 * 179.97438 * 8 7 6 10 10 O 1.21697 * 120.00500 * 173.59545 * 9 8 7 11 11 N 1.34781 * 119.99849 * 353.87202 * 9 8 7 12 12 C 1.46881 * 120.46604 * 4.72378 * 11 9 8 13 13 C 1.52854 * 109.01894 * 235.48702 * 12 11 9 14 14 C 1.52662 * 109.17900 * 307.81844 * 13 12 11 15 15 C 1.53484 * 113.62533 * 188.98992 * 14 13 12 16 16 N 1.47666 * 85.99015 * 137.71068 * 15 14 13 17 17 C 1.36937 * 134.45631 * 155.69878 * 16 15 14 18 18 H 1.08000 * 119.99704 * 185.08775 * 17 16 15 19 19 C 1.38807 * 120.00133 * 5.09948 * 17 16 15 20 20 N 1.31621 * 119.99990 * 354.98625 * 19 17 16 21 21 Si 1.86801 * 120.00122 * 174.99154 * 19 17 16 22 22 H 1.48496 * 109.47321 * 94.99295 * 21 19 17 23 23 H 1.48499 * 109.47164 * 214.99532 * 21 19 17 24 24 H 1.48506 * 109.46783 * 334.99294 * 21 19 17 25 25 C 1.47666 * 91.08686 * 335.68054 * 16 15 14 26 26 C 1.52673 * 113.18636 * 57.45811 * 14 13 12 27 27 C 1.46878 * 120.46723 * 185.00167 * 11 9 8 28 28 H 1.09000 * 109.47218 * 59.99252 * 1 2 3 29 29 H 1.09002 * 109.47655 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46570 * 299.99683 * 1 2 3 31 31 H 1.09010 * 109.46570 * 240.00317 * 2 1 3 32 32 H 1.08997 * 109.47319 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47034 * 300.00843 * 3 2 1 34 34 H 1.09002 * 109.46359 * 60.00567 * 3 2 1 35 35 H 1.08003 * 126.44406 * 359.97438 * 5 4 2 36 36 H 1.08000 * 125.61496 * 179.81031 * 6 5 4 37 37 H 1.09001 * 109.58963 * 355.31354 * 12 11 9 38 38 H 1.09004 * 109.58868 * 115.74735 * 12 11 9 39 39 H 1.08999 * 109.61248 * 187.83714 * 13 12 11 40 40 H 1.09005 * 109.44636 * 67.69675 * 13 12 11 41 41 H 1.09005 * 113.78832 * 251.97593 * 15 14 13 42 42 H 1.08994 * 113.78953 * 23.43780 * 15 14 13 43 43 H 0.96999 * 119.99914 * 180.02562 * 20 19 17 44 44 H 1.08989 * 113.79106 * 270.05293 * 25 16 15 45 45 H 1.08995 * 113.79069 * 138.57697 * 25 16 15 46 46 H 1.08998 * 109.53622 * 182.51994 * 26 14 13 47 47 H 1.09008 * 109.59252 * 62.33427 * 26 14 13 48 48 H 1.08998 * 109.58976 * 244.25884 * 27 11 9 49 49 H 1.09000 * 109.58740 * 4.68881 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7106 1.2304 5 6 1.7784 -0.3565 2.5646 6 6 2.4210 -1.2545 3.3436 7 8 3.0477 -2.1378 2.5557 8 6 2.8200 -1.8254 1.2632 9 6 3.3341 -2.5519 0.0975 10 8 2.9667 -2.2452 -1.0214 11 7 4.2094 -3.5629 0.2658 12 6 4.5761 -4.0137 1.6148 13 6 6.0959 -3.9505 1.7652 14 6 6.7463 -4.7007 0.6056 15 6 8.2607 -4.8902 0.7677 16 7 8.0376 -6.2626 0.2707 17 6 8.8207 -7.1948 -0.3561 18 1 8.3867 -8.1228 -0.6979 19 6 10.1724 -6.9471 -0.5519 20 7 10.6813 -5.7781 -0.2251 21 14 11.2691 -8.2728 -1.2795 22 1 11.3822 -8.0717 -2.7464 23 1 12.6178 -8.1927 -0.6633 24 1 10.6789 -9.6080 -1.0069 25 6 6.6316 -6.2272 0.7208 26 6 6.3407 -4.1597 -0.7633 27 6 4.8146 -4.2254 -0.8970 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6768 1.9561 0.8901 35 1 1.1847 0.4792 2.9048 36 1 2.4277 -1.2594 4.4235 37 1 4.1098 -3.3649 2.3563 38 1 4.2397 -5.0402 1.7612 39 1 6.3898 -4.4116 2.7081 40 1 6.4188 -2.9094 1.7525 41 1 8.8557 -4.2708 0.0965 42 1 8.6009 -4.8470 1.8023 43 1 11.6258 -5.6049 -0.3623 44 1 6.4877 -6.5814 1.7415 45 1 5.9318 -6.6703 0.0124 46 1 6.8013 -4.7636 -1.5450 47 1 6.6706 -3.1252 -0.8599 48 1 4.4953 -5.2670 -0.9314 49 1 4.5054 -3.7160 -1.8097 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035774174.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:45 Heat of formation + Delta-G solvation = 21.158643 kcal Electronic energy + Delta-G solvation = -29567.303353 eV Core-core repulsion = 25690.337611 eV Total energy + Delta-G solvation = -3876.965742 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.75710 -41.44782 -40.02267 -37.59937 -36.67174 -34.43574 -32.94315 -32.39227 -32.11645 -30.49011 -28.65608 -27.98135 -26.77851 -25.57218 -24.75552 -23.73489 -23.50828 -22.54956 -21.61916 -20.30422 -19.24951 -18.69334 -18.13986 -17.45334 -17.32437 -16.85832 -16.83487 -16.15447 -15.95458 -15.80121 -15.58177 -15.19619 -15.03724 -14.79319 -14.44448 -14.13967 -14.07385 -14.05774 -13.71015 -13.65617 -13.27723 -13.03803 -13.03649 -12.87503 -12.79276 -12.65834 -12.19464 -12.19229 -12.15921 -12.14856 -11.93110 -11.68397 -11.55625 -11.10825 -11.01192 -10.84298 -10.81537 -10.61980 -9.84506 -9.42072 -8.86838 -7.89897 -5.21126 0.08437 1.44263 1.45434 1.48483 1.54558 1.61211 2.06207 2.17525 2.47948 3.30161 3.42332 3.49196 3.60091 3.68399 3.88532 3.94949 3.99791 4.13855 4.27174 4.31643 4.34421 4.39054 4.45572 4.52536 4.62228 4.64886 4.73685 4.79028 4.81315 4.81917 4.87504 4.91024 4.97983 5.00418 5.07044 5.11444 5.17033 5.20374 5.23878 5.28528 5.32021 5.38510 5.44360 5.52082 5.58658 5.58961 5.73548 5.96382 5.97788 6.34812 6.94070 6.96588 7.63128 8.60781 9.27389 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.026901 B = 0.002622 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.595615 B =10676.182324 C =11045.903992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.058 4.058 3 C -0.134 4.134 4 C -0.077 4.077 5 C -0.229 4.229 6 C 0.005 3.995 7 O -0.161 6.161 8 C -0.114 4.114 9 C 0.595 3.405 10 O -0.558 6.558 11 N -0.597 5.597 12 C 0.097 3.903 13 C -0.108 4.108 14 C -0.085 4.085 15 C 0.172 3.828 16 N -0.638 5.638 17 C -0.230 4.230 18 H 0.082 0.918 19 C -0.068 4.068 20 N -0.953 5.953 21 Si 0.974 3.026 22 H -0.288 1.288 23 H -0.295 1.295 24 H -0.268 1.268 25 C 0.130 3.870 26 C -0.089 4.089 27 C 0.125 3.875 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.039 0.961 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.178 0.822 36 H 0.252 0.748 37 H 0.126 0.874 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.062 0.938 41 H 0.031 0.969 42 H 0.017 0.983 43 H 0.247 0.753 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.055 0.945 48 H 0.080 0.920 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.221 13.039 9.171 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.076 4.076 3 C -0.191 4.191 4 C -0.080 4.080 5 C -0.247 4.247 6 C -0.063 4.063 7 O -0.058 6.058 8 C -0.165 4.165 9 C 0.385 3.615 10 O -0.440 6.440 11 N -0.327 5.327 12 C -0.024 4.024 13 C -0.147 4.147 14 C -0.086 4.086 15 C 0.046 3.954 16 N -0.365 5.365 17 C -0.358 4.358 18 H 0.100 0.900 19 C -0.261 4.261 20 N -0.602 5.602 21 Si 0.802 3.198 22 H -0.215 1.215 23 H -0.222 1.222 24 H -0.193 1.193 25 C 0.006 3.994 26 C -0.128 4.128 27 C 0.003 3.997 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.195 0.805 36 H 0.268 0.732 37 H 0.143 0.857 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.035 0.965 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.098 0.902 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.941 12.755 8.525 26.772 hybrid contribution 1.440 -0.751 -0.509 1.702 sum -20.501 12.004 8.016 25.073 Atomic orbital electron populations 1.21712 0.92750 1.01489 1.02891 1.20007 0.97013 0.96258 0.94345 1.21740 1.00252 0.94165 1.02957 1.20863 0.95906 0.93811 0.97392 1.21938 1.07359 1.04606 0.90825 1.25452 0.93515 0.88572 0.98759 1.84135 1.58834 1.47410 1.15449 1.21530 1.10080 1.02316 0.82557 1.17033 0.78780 0.79127 0.86534 1.90755 1.60832 1.67896 1.24545 1.48082 1.42313 1.33459 1.08868 1.22370 0.95373 1.02101 0.82523 1.21665 0.94520 1.00485 0.98017 1.22140 0.95765 0.95157 0.95512 1.22109 0.92524 0.85619 0.95126 1.46294 1.09177 1.14544 1.66440 1.19395 0.90271 0.97460 1.28708 0.90040 1.25594 0.98027 0.99326 1.03185 1.70026 1.12268 1.22867 1.55043 0.85133 0.78087 0.79096 0.77475 1.21546 1.22176 1.19306 1.22761 0.85900 0.93403 0.97368 1.21367 0.94760 1.00266 0.96365 1.21563 0.91797 0.97870 0.88491 0.91433 0.93870 0.91026 0.90390 0.94154 0.91381 0.90976 0.80465 0.73169 0.85741 0.89804 0.89198 0.91876 0.95054 0.96522 0.94441 0.93280 0.93120 0.92108 0.92644 0.90193 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 9.09 71.98 0.65 -1.48 16 2 C -0.06 -1.21 3.19 -11.54 -0.04 -1.24 16 3 C -0.13 -2.28 9.09 71.98 0.65 -1.62 16 4 C -0.08 -1.63 4.87 -19.74 -0.10 -1.72 16 5 C -0.23 -3.19 10.41 22.07 0.23 -2.96 16 6 C 0.01 0.06 12.08 67.10 0.81 0.87 16 7 O -0.16 -3.05 7.05 -4.94 -0.03 -3.09 16 8 C -0.11 -2.81 6.86 24.07 0.17 -2.64 16 9 C 0.59 17.78 7.65 86.44 0.66 18.44 16 10 O -0.56 -19.48 13.85 -4.34 -0.06 -19.54 16 11 N -0.60 -16.72 2.95 -824.23 -2.43 -19.15 16 12 C 0.10 2.28 6.18 86.26 0.53 2.82 16 13 C -0.11 -2.96 5.24 30.43 0.16 -2.80 16 14 C -0.08 -3.02 0.77 -52.03 -0.04 -3.06 16 15 C 0.17 8.17 6.58 86.31 0.57 8.74 16 16 N -0.64 -32.59 3.53 -722.64 -2.55 -35.14 16 17 C -0.23 -13.00 10.70 84.03 0.90 -12.10 16 18 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 19 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 20 N -0.95 -58.48 11.47 21.65 0.25 -58.23 16 21 Si 0.97 46.48 29.56 68.60 2.03 48.51 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 C 0.13 5.03 7.73 86.32 0.67 5.70 16 26 C -0.09 -3.14 5.21 30.60 0.16 -2.98 16 27 C 0.12 3.75 6.29 86.42 0.54 4.29 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.89 8.05 -2.38 -0.02 0.87 16 31 H 0.08 2.16 5.51 -2.38 -0.01 2.14 16 32 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 0.94 8.06 -2.39 -0.02 0.92 16 35 H 0.18 1.48 8.06 -2.91 -0.02 1.45 16 36 H 0.25 0.41 8.06 -2.91 -0.02 0.38 16 37 H 0.13 2.57 3.68 -62.72 -0.23 2.34 16 38 H 0.08 1.80 8.08 -2.38 -0.02 1.79 16 39 H 0.09 2.26 8.12 -2.39 -0.02 2.24 16 40 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.03 1.71 7.25 -2.38 -0.02 1.69 16 42 H 0.02 0.82 8.09 -2.39 -0.02 0.81 16 43 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 44 H 0.05 1.77 8.07 -2.39 -0.02 1.75 16 45 H 0.05 1.86 7.41 -2.39 -0.02 1.84 16 46 H 0.06 2.48 8.01 -2.39 -0.02 2.46 16 47 H 0.05 1.99 8.14 -2.38 -0.02 1.97 16 48 H 0.08 2.26 7.49 -2.39 -0.02 2.24 16 49 H 0.09 2.67 7.00 -2.39 -0.02 2.66 16 Total: -1.00 -73.42 383.10 4.91 -68.51 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.72 Total: 13.40 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 7.00 Total: 4.75 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -4.73 Total: -112.53 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.09 Total: -22.63 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -73.42 4.91 -68.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035774174.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.665 kcal (2) G-P(sol) polarization free energy of solvation -73.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds