Wall clock time and date at job start Tue Mar 31 2020 17:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46928 * 2 1 4 4 C 1.50704 * 109.46904 * 119.99455 * 2 1 3 5 5 C 1.40358 * 126.64648 * 300.02609 * 4 2 1 6 6 C 1.35133 * 107.11244 * 179.97438 * 5 4 2 7 7 O 1.33922 * 108.77073 * 359.75690 * 6 5 4 8 8 C 1.34919 * 109.38206 * 0.40129 * 7 6 5 9 9 C 1.46658 * 125.98551 * 179.86207 * 8 7 6 10 10 O 1.21693 * 119.99507 * 185.03453 * 9 8 7 11 11 N 1.34770 * 120.00324 * 5.03132 * 9 8 7 12 12 C 1.47074 * 121.16027 * 354.30436 * 11 9 8 13 13 C 1.52842 * 107.95196 * 122.75364 * 12 11 9 14 14 C 1.53090 * 110.57392 * 57.35066 * 13 12 11 15 15 H 1.08998 * 113.06472 * 70.98598 * 14 13 12 16 16 C 1.56028 * 106.39286 * 195.41666 * 14 13 12 17 17 C 1.54502 * 102.61428 * 78.38313 * 16 14 13 18 18 N 1.47433 * 107.14897 * 22.83917 * 17 16 14 19 19 C 1.36931 * 126.05903 * 181.60334 * 18 17 16 20 20 H 1.08001 * 120.00110 * 180.02562 * 19 18 17 21 21 C 1.38812 * 120.00387 * 0.02845 * 19 18 17 22 22 N 1.31622 * 119.99893 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00327 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47154 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47014 * 120.00184 * 23 21 19 26 26 H 1.48500 * 109.47115 * 239.99748 * 23 21 19 27 27 C 1.46466 * 107.88182 * 1.63035 * 18 17 16 28 28 H 1.08998 * 108.42039 * 89.23324 * 27 18 17 29 29 C 1.46760 * 121.21760 * 174.36743 * 11 9 8 30 30 H 1.08998 * 109.47563 * 300.00383 * 1 2 3 31 31 H 1.08998 * 109.47061 * 60.00744 * 1 2 3 32 32 H 1.09006 * 109.46951 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47563 * 239.99617 * 2 1 3 34 34 H 1.09004 * 109.47272 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47102 * 299.99778 * 3 2 1 36 36 H 1.08998 * 109.47311 * 59.99463 * 3 2 1 37 37 H 1.07997 * 126.44549 * 359.97438 * 5 4 2 38 38 H 1.08008 * 125.61214 * 180.02562 * 6 5 4 39 39 H 1.08991 * 109.77545 * 3.13772 * 12 11 9 40 40 H 1.09005 * 109.80584 * 242.38730 * 12 11 9 41 41 H 1.08994 * 109.25471 * 297.06273 * 13 12 11 42 42 H 1.09008 * 109.22236 * 177.61030 * 13 12 11 43 43 H 1.08999 * 110.78529 * 320.09670 * 16 14 13 44 44 H 1.09004 * 110.77999 * 196.65992 * 16 14 13 45 45 H 1.08998 * 109.90151 * 263.45667 * 17 16 14 46 46 H 1.09002 * 109.90143 * 142.22292 * 17 16 14 47 47 H 0.96992 * 120.00665 * 179.97438 * 22 21 19 48 48 H 1.09006 * 109.22684 * 112.17035 * 29 11 9 49 49 H 1.09004 * 109.22547 * 352.77339 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 1.7802 -0.3547 2.5647 6 6 2.4174 -1.2564 3.3438 7 8 3.0385 -2.1437 2.5562 8 6 2.8203 -1.8249 1.2636 9 6 3.3342 -2.5519 0.0981 10 8 3.1461 -2.1158 -1.0224 11 7 4.0148 -3.7026 0.2680 12 6 4.3644 -4.1888 1.6113 13 6 3.7727 -5.5886 1.7744 14 6 4.2905 -6.5227 0.6777 15 1 5.3420 -6.7829 0.7996 16 6 3.3530 -7.7699 0.6827 17 6 2.1050 -7.2569 -0.0699 18 7 2.5362 -6.1181 -0.9011 19 6 1.7305 -5.3553 -1.7037 20 1 2.1519 -4.5404 -2.2736 21 6 0.3721 -5.6294 -1.7848 22 7 -0.1414 -6.6228 -1.0906 23 14 -0.7271 -4.5884 -2.8791 24 1 0.0881 -3.5433 -3.5487 25 1 -1.3640 -5.4520 -3.9057 26 1 -1.7791 -3.9430 -2.0534 27 6 3.9791 -5.9476 -0.7166 28 1 4.4956 -6.5616 -1.4543 29 6 4.4348 -4.5145 -0.8802 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6765 1.9564 0.8899 37 1 1.1884 0.4823 2.9048 38 1 2.4211 -1.2631 4.4239 39 1 3.9465 -3.5219 2.3652 40 1 5.4484 -4.2322 1.7178 41 1 2.6861 -5.5289 1.7124 42 1 4.0558 -5.9866 2.7489 43 1 3.0983 -8.0583 1.7025 44 1 3.8125 -8.6013 0.1479 45 1 1.3493 -6.9300 0.6443 46 1 1.7027 -8.0475 -0.7035 47 1 -1.0906 -6.8142 -1.1470 48 1 5.5217 -4.4902 -0.9587 49 1 3.9999 -4.1013 -1.7903 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042205379.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:54 Heat of formation + Delta-G solvation = 15.823575 kcal Electronic energy + Delta-G solvation = -31245.556269 eV Core-core repulsion = 27368.359181 eV Total energy + Delta-G solvation = -3877.197088 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.63212 -39.75181 -38.02319 -36.10634 -34.84571 -32.81595 -31.77732 -31.17652 -30.04410 -28.67435 -28.34631 -26.94750 -24.78622 -24.31317 -22.70043 -22.54841 -22.12178 -20.56007 -19.93375 -19.17575 -18.44228 -17.17532 -16.55186 -16.18748 -16.11877 -15.41405 -14.83983 -14.68975 -14.46823 -14.25541 -13.92251 -13.73599 -13.71168 -13.06678 -13.03004 -12.94047 -12.84101 -12.63718 -12.20273 -12.07674 -11.97560 -11.53524 -11.35943 -11.18387 -11.05545 -11.00829 -10.87925 -10.76168 -10.74562 -10.63317 -10.05520 -9.83757 -9.74820 -9.61728 -9.58276 -9.48258 -9.37280 -8.51877 -8.49390 -8.07403 -6.74467 -5.62481 -2.94322 1.32794 2.51022 2.83072 3.41756 3.47225 3.53955 3.59523 3.67836 4.59225 4.71229 4.80428 4.91118 5.13430 5.19019 5.33666 5.36768 5.41180 5.47220 5.53036 5.58619 5.66939 5.72635 5.75488 5.78611 5.79663 5.84994 5.97391 5.98830 6.01460 6.12675 6.15623 6.23077 6.25850 6.30871 6.39849 6.44584 6.48671 6.50020 6.53832 6.63092 6.69302 6.75291 6.97855 7.07504 7.12790 7.65110 7.66418 7.84070 7.92580 8.32228 8.54388 9.30952 9.91989 10.56663 11.49939 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010303 B = 0.006180 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.086397 B = 4529.524721 C = 6133.153548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.052 4.052 3 C -0.134 4.134 4 C -0.082 4.082 5 C -0.216 4.216 6 C -0.028 4.028 7 O -0.156 6.156 8 C -0.064 4.064 9 C 0.608 3.392 10 O -0.517 6.517 11 N -0.584 5.584 12 C 0.094 3.906 13 C -0.120 4.120 14 C -0.103 4.103 15 H 0.076 0.924 16 C -0.144 4.144 17 C 0.179 3.821 18 N -0.588 5.588 19 C -0.213 4.213 20 H 0.082 0.918 21 C -0.008 4.008 22 N -0.925 5.925 23 Si 0.901 3.099 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.292 1.292 27 C 0.153 3.847 28 H 0.028 0.972 29 C 0.115 3.885 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.112 0.888 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.050 0.950 37 H 0.149 0.851 38 H 0.204 0.796 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.044 0.956 46 H 0.041 0.959 47 H 0.249 0.751 48 H 0.058 0.942 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.566 9.173 10.365 16.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.070 4.070 3 C -0.192 4.192 4 C -0.085 4.085 5 C -0.235 4.235 6 C -0.096 4.096 7 O -0.053 6.053 8 C -0.115 4.115 9 C 0.396 3.604 10 O -0.396 6.396 11 N -0.315 5.315 12 C -0.028 4.028 13 C -0.158 4.158 14 C -0.123 4.123 15 H 0.094 0.906 16 C -0.182 4.182 17 C 0.054 3.946 18 N -0.314 5.314 19 C -0.341 4.341 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.573 5.573 23 Si 0.732 3.268 24 H -0.201 1.201 25 H -0.220 1.220 26 H -0.219 1.219 27 C 0.045 3.955 28 H 0.046 0.954 29 C -0.008 4.008 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.130 0.870 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.167 0.833 38 H 0.220 0.780 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.076 0.924 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.407 9.148 9.749 15.792 hybrid contribution -0.949 0.448 -0.194 1.067 sum 7.458 9.596 9.555 15.460 Atomic orbital electron populations 1.21776 0.94394 1.02344 1.01196 1.19989 0.95698 0.95498 0.95834 1.21741 1.00934 0.95200 1.01306 1.20503 0.97363 0.94821 0.95831 1.21582 1.06238 1.03312 0.92366 1.24371 0.97647 0.90578 0.97036 1.84199 1.59183 1.45677 1.16243 1.22055 1.07354 1.00022 0.82070 1.16493 0.77765 0.80274 0.85847 1.90767 1.58548 1.67410 1.22840 1.47665 1.54605 1.21208 1.07979 1.22191 0.99443 0.96901 0.84265 1.21803 1.02688 0.93683 0.97621 1.22404 0.97834 0.96183 0.95842 0.90612 1.23167 0.98562 0.96410 1.00069 1.21213 0.91093 0.89573 0.92717 1.44290 1.01150 1.34624 1.51319 1.19072 0.88796 1.08800 1.17481 0.90074 1.24699 0.96717 0.98605 1.00298 1.69965 1.11649 1.31021 1.44664 0.86158 0.80899 0.79706 0.79992 1.20102 1.22004 1.21926 1.20712 0.88215 0.92556 0.94033 0.95437 1.21472 0.97530 0.92078 0.89713 0.93092 0.92379 0.92282 0.87023 0.92850 0.92417 0.93094 0.83296 0.77978 0.87860 0.91769 0.90153 0.92076 0.92316 0.92732 0.93744 0.94104 0.94106 0.92426 0.88506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.09 37.16 0.34 -1.74 16 2 C -0.05 -0.82 3.19 -91.77 -0.29 -1.11 16 3 C -0.13 -1.69 9.09 37.16 0.34 -1.35 16 4 C -0.08 -1.32 4.87 -104.44 -0.51 -1.83 16 5 C -0.22 -2.75 10.41 -39.89 -0.42 -3.16 16 6 C -0.03 -0.32 12.08 29.63 0.36 0.04 16 7 O -0.16 -2.31 7.09 5.00 0.04 -2.27 16 8 C -0.06 -1.12 6.88 -36.80 -0.25 -1.37 16 9 C 0.61 12.22 7.67 -12.87 -0.10 12.12 16 10 O -0.52 -11.68 13.91 5.19 0.07 -11.60 16 11 N -0.58 -10.76 2.97 -175.70 -0.52 -11.29 16 12 C 0.09 1.42 6.34 -3.81 -0.02 1.40 16 13 C -0.12 -1.93 5.04 -26.77 -0.13 -2.06 16 14 C -0.10 -1.72 3.68 -88.43 -0.33 -2.04 16 15 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 16 C -0.14 -2.62 6.33 -24.32 -0.15 -2.77 16 17 C 0.18 4.28 4.61 -2.74 -0.01 4.27 16 18 N -0.59 -14.62 3.20 -164.42 -0.53 -15.15 16 19 C -0.21 -5.98 9.70 -15.06 -0.15 -6.13 16 20 H 0.08 2.32 6.51 -52.49 -0.34 1.98 16 21 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 22 N -0.92 -27.64 10.38 55.49 0.58 -27.07 16 23 Si 0.90 23.42 29.55 -169.99 -5.02 18.40 16 24 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 26 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 27 C 0.15 3.07 2.97 -68.30 -0.20 2.86 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 29 C 0.11 2.17 5.67 -4.78 -0.03 2.14 16 30 H 0.05 0.65 8.05 -51.93 -0.42 0.23 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.11 2.11 5.50 -51.93 -0.29 1.83 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.56 8.05 -51.93 -0.42 0.14 16 37 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.20 1.40 8.06 -52.48 -0.42 0.97 16 39 H 0.10 1.52 3.80 -55.07 -0.21 1.31 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.63 6.85 -51.93 -0.36 1.27 16 42 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 43 H 0.06 0.97 7.97 -51.93 -0.41 0.56 16 44 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.04 1.19 7.04 -51.93 -0.37 0.83 16 46 H 0.04 1.10 7.57 -51.93 -0.39 0.70 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.10 2.10 5.57 -51.93 -0.29 1.82 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -32.74 374.29 -9.10 -41.84 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.70 Total: 2.55 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -1.66 Total: -1.06 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.47 Total: -53.50 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.11 Total: -13.87 kcal Atomic # 14 Polarization: 23.42 SS G_CDS: -5.02 Total: 18.40 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.74 -9.10 -41.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042205379.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.664 kcal (2) G-P(sol) polarization free energy of solvation -32.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds