Wall clock time and date at job start Tue Mar 31 2020 16:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47129 * 2 1 4 4 C 1.52995 * 109.46834 * 120.00471 * 2 1 3 5 5 C 1.53000 * 109.47362 * 64.99823 * 4 2 1 6 6 H 1.08998 * 109.44909 * 302.80335 * 5 4 2 7 7 C 1.54868 * 109.45015 * 182.86318 * 5 4 2 8 8 C 1.47088 * 110.32192 * 168.69172 * 7 5 4 9 9 C 1.52567 * 114.32656 * 62.80167 * 8 7 5 10 10 C 1.50881 * 109.36146 * 274.98878 * 9 8 7 11 11 C 1.53946 * 110.09950 * 91.88240 * 10 9 8 12 12 N 1.44574 * 109.45097 * 62.72952 * 5 4 2 13 13 S 1.65603 * 118.64379 * 30.76343 * 12 5 4 14 14 O 1.42094 * 106.40524 * 250.93170 * 13 12 5 15 15 O 1.42102 * 106.40174 * 23.85269 * 13 12 5 16 16 N 1.65605 * 107.21561 * 137.38698 * 13 12 5 17 17 C 1.46503 * 119.99480 * 89.86930 * 16 13 12 18 18 C 1.46489 * 120.00246 * 269.86491 * 16 13 12 19 19 C 1.50701 * 109.47501 * 109.99030 * 18 16 13 20 20 H 1.08006 * 119.99519 * 5.41724 * 19 18 16 21 21 C 1.37877 * 120.00617 * 185.40795 * 19 18 16 22 22 N 1.31509 * 120.00188 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99679 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47169 * 89.99667 * 23 21 19 25 25 H 1.48496 * 109.47046 * 209.99621 * 23 21 19 26 26 H 1.48498 * 109.47191 * 329.99633 * 23 21 19 27 27 H 1.09001 * 109.46628 * 59.99578 * 1 2 3 28 28 H 1.08994 * 109.46963 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46462 * 300.00383 * 1 2 3 30 30 H 1.09006 * 109.46971 * 239.99983 * 2 1 3 31 31 H 1.09004 * 109.46816 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47677 * 300.00070 * 3 2 1 33 33 H 1.08998 * 109.47099 * 60.00769 * 3 2 1 34 34 H 1.08998 * 109.47160 * 304.99546 * 4 2 1 35 35 H 1.09008 * 109.47005 * 184.99872 * 4 2 1 36 36 H 1.09006 * 109.32713 * 288.95354 * 7 5 4 37 37 H 1.08996 * 109.32930 * 48.42750 * 7 5 4 38 38 H 1.09003 * 108.51336 * 184.05011 * 8 7 5 39 39 H 1.08998 * 108.51602 * 301.70242 * 8 7 5 40 40 H 1.09001 * 109.49332 * 34.94975 * 9 8 7 41 41 H 1.09003 * 109.49360 * 155.01835 * 9 8 7 42 42 H 1.08997 * 109.36978 * 212.08130 * 10 9 8 43 43 H 1.09010 * 109.36177 * 331.69248 * 10 9 8 44 44 H 1.09001 * 108.94418 * 80.12039 * 11 10 9 45 45 H 1.08995 * 108.94806 * 198.84169 * 11 10 9 46 46 H 1.08999 * 109.47370 * 90.00283 * 17 16 13 47 47 H 1.09009 * 109.46711 * 209.99589 * 17 16 13 48 48 H 1.08996 * 109.47382 * 329.99627 * 17 16 13 49 49 H 1.09002 * 109.47371 * 229.99209 * 18 16 13 50 50 H 1.09002 * 109.47347 * 349.99279 * 18 16 13 51 51 H 0.96999 * 120.00293 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1878 6 1 0.5521 -2.2708 1.0917 7 6 2.0884 -2.9092 2.4854 8 6 1.4818 -4.2464 2.5715 9 6 1.8959 -5.1977 1.4530 10 6 1.0088 -4.9751 0.2530 11 6 1.6464 -3.9400 -0.6916 12 7 2.2639 -2.8203 0.0457 13 16 3.7379 -2.2564 -0.4563 14 8 3.5120 -1.5832 -1.6871 15 8 4.3345 -1.6327 0.6726 16 7 4.6732 -3.5764 -0.8099 17 6 4.6672 -4.1369 -2.1635 18 6 5.5067 -4.1836 0.2306 19 6 4.9403 -5.5285 0.6068 20 1 4.1014 -5.9332 0.0601 21 6 5.4932 -6.2425 1.6487 22 7 4.9986 -7.4159 1.9773 23 14 6.9439 -5.5423 2.5946 24 1 6.4465 -4.7362 3.7383 25 1 7.7869 -6.6543 3.1023 26 1 7.7514 -4.6798 1.6951 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9564 -0.8899 33 1 1.6769 1.9563 0.8900 34 1 1.6054 -0.2618 2.1369 35 1 3.1264 -0.6445 1.2951 36 1 3.1743 -3.0050 2.4840 37 1 1.7822 -2.3178 3.3482 38 1 1.7611 -4.6923 3.5261 39 1 0.3976 -4.1369 2.5460 40 1 2.9334 -5.0067 1.1785 41 1 1.7936 -6.2276 1.7949 42 1 0.8773 -5.9173 -0.2791 43 1 0.0365 -4.6109 0.5849 44 1 2.4109 -4.4328 -1.2922 45 1 0.8768 -3.5442 -1.3541 46 1 5.4426 -3.6558 -2.7595 47 1 4.8598 -5.2087 -2.1137 48 1 3.6947 -3.9636 -2.6242 49 1 6.5223 -4.3091 -0.1446 50 1 5.5208 -3.5371 1.1081 51 1 5.3873 -7.9180 2.7105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122302164.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:05 Heat of formation + Delta-G solvation = -74.387855 kcal Electronic energy + Delta-G solvation = -31254.421037 eV Core-core repulsion = 27508.756039 eV Total energy + Delta-G solvation = -3745.664998 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.08415 -36.83682 -36.42942 -35.63622 -35.02481 -33.06775 -32.46780 -32.21789 -28.44698 -27.57115 -27.06299 -25.47069 -25.32843 -23.40437 -21.94423 -20.70460 -20.15382 -19.47486 -18.19391 -17.37934 -16.79829 -16.48295 -16.04707 -15.38914 -14.89730 -14.66968 -14.29283 -14.17627 -13.98000 -13.79812 -13.50178 -13.14427 -12.79716 -12.66006 -12.48271 -12.35275 -12.28983 -12.22940 -12.08082 -11.95835 -11.74294 -11.62230 -11.40071 -11.36583 -11.18932 -11.11054 -10.80137 -10.71022 -10.51926 -10.38986 -10.27979 -10.17805 -10.05362 -9.96168 -9.66605 -9.56542 -9.35327 -8.65031 -8.47147 -8.16820 -6.20362 -4.18826 1.17075 3.22880 3.29480 3.34135 3.36389 3.93633 4.31831 4.75461 4.92081 4.96711 5.09162 5.11703 5.16202 5.39350 5.41411 5.43415 5.46920 5.53897 5.66026 5.68794 5.73580 5.82796 5.89593 5.90944 5.97152 5.98156 6.01277 6.08051 6.13446 6.16361 6.21951 6.30880 6.35890 6.44313 6.48459 6.52299 6.53363 6.62592 6.74947 6.82814 6.86751 6.89508 6.98893 7.04632 7.19069 7.32866 7.51247 7.60746 8.35933 8.81120 9.40073 10.90406 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014443 B = 0.006064 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.197649 B = 4616.163848 C = 5045.770062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.122 4.122 3 C -0.144 4.144 4 C -0.205 4.205 5 C 0.171 3.829 6 H 0.082 0.918 7 C -0.134 4.134 8 C -0.106 4.106 9 C -0.143 4.143 10 C -0.118 4.118 11 C 0.124 3.876 12 N -0.990 5.990 13 S 2.785 3.215 14 O -0.995 6.995 15 O -0.979 6.979 16 N -0.992 5.992 17 C 0.098 3.902 18 C 0.214 3.786 19 C -0.537 4.537 20 H 0.089 0.911 21 C 0.082 3.918 22 N -0.885 5.885 23 Si 0.861 3.139 24 H -0.272 1.272 25 H -0.285 1.285 26 H -0.264 1.264 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.085 0.915 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.133 0.867 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.050 0.950 39 H 0.042 0.958 40 H 0.125 0.875 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.055 0.945 46 H 0.046 0.954 47 H 0.083 0.917 48 H 0.056 0.944 49 H 0.030 0.970 50 H 0.045 0.955 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.234 8.858 -3.291 12.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.140 4.140 3 C -0.202 4.202 4 C -0.243 4.243 5 C 0.064 3.936 6 H 0.100 0.900 7 C -0.173 4.173 8 C -0.144 4.144 9 C -0.180 4.180 10 C -0.156 4.156 11 C -0.001 4.001 12 N -0.829 5.829 13 S 2.795 3.205 14 O -0.978 6.978 15 O -0.963 6.963 16 N -0.833 5.833 17 C -0.048 4.048 18 C 0.091 3.909 19 C -0.576 4.576 20 H 0.107 0.893 21 C -0.122 4.122 22 N -0.522 5.522 23 Si 0.688 3.312 24 H -0.197 1.197 25 H -0.211 1.211 26 H -0.189 1.189 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.150 0.850 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.143 0.857 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.102 0.898 48 H 0.074 0.926 49 H 0.048 0.952 50 H 0.063 0.937 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.961 9.595 -3.261 12.886 hybrid contribution 0.465 -0.340 0.781 0.971 sum -7.496 9.254 -2.479 12.165 Atomic orbital electron populations 1.21828 0.95288 1.01654 1.01111 1.21449 0.96423 0.96843 0.99294 1.21798 1.01249 0.95903 1.01220 1.23283 1.08007 0.94110 0.98864 1.20717 0.97732 0.90349 0.84845 0.90043 1.21320 1.02846 0.96464 0.96654 1.20340 0.98843 0.95556 0.99642 1.21534 1.04678 0.98366 0.93431 1.21635 0.98559 0.97728 0.97728 1.21666 0.98131 0.86827 0.93494 1.57409 1.37776 1.45979 1.41747 1.02057 0.72455 0.72923 0.73041 1.93544 1.85659 1.72067 1.46533 1.93358 1.76804 1.74061 1.52064 1.57291 1.58689 1.49803 1.17509 1.21381 1.00438 1.01167 0.81789 1.19601 0.90744 0.94787 0.85776 1.21322 1.18032 1.01211 1.17040 0.89296 1.24780 0.96348 0.94586 0.96507 1.69868 1.41012 1.12396 1.28930 0.87067 0.83607 0.79200 0.81317 1.19721 1.21073 1.18857 0.93123 0.92458 0.93003 0.89708 0.92638 0.92847 0.92868 0.90064 0.84985 0.90472 0.92006 0.93085 0.93978 0.85709 0.92304 0.91574 0.92840 0.90403 0.92662 0.93502 0.89785 0.92553 0.95160 0.93701 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.95 37.16 0.33 -1.35 16 2 C -0.12 -1.75 2.66 -90.62 -0.24 -1.99 16 3 C -0.14 -1.90 9.19 37.16 0.34 -1.56 16 4 C -0.20 -3.10 3.64 -26.73 -0.10 -3.19 16 5 C 0.17 2.62 1.73 -67.97 -0.12 2.51 16 6 H 0.08 1.11 6.36 -51.93 -0.33 0.78 16 7 C -0.13 -2.20 5.01 -28.58 -0.14 -2.34 16 8 C -0.11 -1.75 5.16 -29.79 -0.15 -1.90 16 9 C -0.14 -2.62 5.45 -28.02 -0.15 -2.77 16 10 C -0.12 -1.77 5.71 -27.30 -0.16 -1.93 16 11 C 0.12 1.88 6.23 -2.94 -0.02 1.86 16 12 N -0.99 -16.51 2.07 -106.19 -0.22 -16.73 16 13 S 2.78 53.49 4.32 -107.50 -0.46 53.02 16 14 O -1.00 -19.89 15.20 -57.17 -0.87 -20.76 16 15 O -0.98 -20.50 12.00 -57.17 -0.69 -21.18 16 16 N -0.99 -19.46 2.79 -123.05 -0.34 -19.81 16 17 C 0.10 1.63 9.21 59.85 0.55 2.18 16 18 C 0.21 4.80 4.63 -5.20 -0.02 4.77 16 19 C -0.54 -13.09 6.88 -34.44 -0.24 -13.33 16 20 H 0.09 2.26 7.23 -52.48 -0.38 1.88 16 21 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 22 N -0.88 -24.13 13.96 55.43 0.77 -23.36 16 23 Si 0.86 20.13 27.36 -169.99 -4.65 15.47 16 24 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.26 -6.00 6.70 56.52 0.38 -5.62 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.67 6.51 -51.93 -0.34 0.33 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 1.41 4.84 -51.93 -0.25 1.16 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.13 2.34 4.32 -54.55 -0.24 2.11 16 36 H 0.08 1.50 7.47 -51.93 -0.39 1.11 16 37 H 0.06 0.89 8.11 -51.93 -0.42 0.47 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.04 0.61 7.35 -51.93 -0.38 0.22 16 40 H 0.13 2.64 3.60 -51.93 -0.19 2.45 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.72 7.31 -51.92 -0.38 0.34 16 44 H 0.08 1.21 4.97 -51.93 -0.26 0.95 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.08 1.39 7.69 -51.92 -0.40 0.99 16 48 H 0.06 0.82 6.59 -51.93 -0.34 0.48 16 49 H 0.03 0.68 7.57 -51.93 -0.39 0.29 16 50 H 0.05 1.05 5.93 -51.93 -0.31 0.74 16 51 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 372.26 15.07 5.61 5.61 Total: -1.00 -27.86 372.26 -9.86 -37.72 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -8.80 Total: 7.03 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -0.21 Total: -17.02 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 0.21 Total: -59.90 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -1.55 Total: -41.94 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.65 Total: 15.47 kcal Atomic # 16 Polarization: 53.49 SS G_CDS: -0.46 Total: 53.02 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.86 -9.86 -37.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122302164.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.667 kcal (2) G-P(sol) polarization free energy of solvation -27.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds