Wall clock time and date at job start Tue Mar 31 2020 16:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47129 * 2 1 4 4 C 1.52995 * 109.46834 * 120.00471 * 2 1 3 5 5 C 1.53000 * 109.47362 * 64.99823 * 4 2 1 6 6 H 1.08998 * 109.44909 * 302.80335 * 5 4 2 7 7 C 1.54868 * 109.45015 * 182.86318 * 5 4 2 8 8 C 1.47088 * 110.32192 * 168.69172 * 7 5 4 9 9 C 1.52567 * 114.32656 * 62.80167 * 8 7 5 10 10 C 1.50881 * 109.36146 * 274.98878 * 9 8 7 11 11 C 1.53946 * 110.09950 * 91.88240 * 10 9 8 12 12 N 1.44574 * 109.45097 * 62.72952 * 5 4 2 13 13 S 1.65603 * 118.64379 * 30.76343 * 12 5 4 14 14 O 1.42094 * 106.40524 * 250.93170 * 13 12 5 15 15 O 1.42102 * 106.40174 * 23.85269 * 13 12 5 16 16 N 1.65605 * 107.21561 * 137.38698 * 13 12 5 17 17 C 1.46503 * 119.99480 * 89.86930 * 16 13 12 18 18 C 1.46489 * 120.00246 * 269.86491 * 16 13 12 19 19 C 1.50701 * 109.47501 * 109.99030 * 18 16 13 20 20 H 1.08006 * 119.99519 * 5.41724 * 19 18 16 21 21 C 1.37877 * 120.00617 * 185.40795 * 19 18 16 22 22 N 1.31509 * 120.00188 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99679 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47169 * 89.99667 * 23 21 19 25 25 H 1.48496 * 109.47046 * 209.99621 * 23 21 19 26 26 H 1.48498 * 109.47191 * 329.99633 * 23 21 19 27 27 H 1.09001 * 109.46628 * 59.99578 * 1 2 3 28 28 H 1.08994 * 109.46963 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46462 * 300.00383 * 1 2 3 30 30 H 1.09006 * 109.46971 * 239.99983 * 2 1 3 31 31 H 1.09004 * 109.46816 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47677 * 300.00070 * 3 2 1 33 33 H 1.08998 * 109.47099 * 60.00769 * 3 2 1 34 34 H 1.08998 * 109.47160 * 304.99546 * 4 2 1 35 35 H 1.09008 * 109.47005 * 184.99872 * 4 2 1 36 36 H 1.09006 * 109.32713 * 288.95354 * 7 5 4 37 37 H 1.08996 * 109.32930 * 48.42750 * 7 5 4 38 38 H 1.09003 * 108.51336 * 184.05011 * 8 7 5 39 39 H 1.08998 * 108.51602 * 301.70242 * 8 7 5 40 40 H 1.09001 * 109.49332 * 34.94975 * 9 8 7 41 41 H 1.09003 * 109.49360 * 155.01835 * 9 8 7 42 42 H 1.08997 * 109.36978 * 212.08130 * 10 9 8 43 43 H 1.09010 * 109.36177 * 331.69248 * 10 9 8 44 44 H 1.09001 * 108.94418 * 80.12039 * 11 10 9 45 45 H 1.08995 * 108.94806 * 198.84169 * 11 10 9 46 46 H 1.08999 * 109.47370 * 90.00283 * 17 16 13 47 47 H 1.09009 * 109.46711 * 209.99589 * 17 16 13 48 48 H 1.08996 * 109.47382 * 329.99627 * 17 16 13 49 49 H 1.09002 * 109.47371 * 229.99209 * 18 16 13 50 50 H 1.09002 * 109.47347 * 349.99279 * 18 16 13 51 51 H 0.96999 * 120.00293 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1878 6 1 0.5521 -2.2708 1.0917 7 6 2.0884 -2.9092 2.4854 8 6 1.4818 -4.2464 2.5715 9 6 1.8959 -5.1977 1.4530 10 6 1.0088 -4.9751 0.2530 11 6 1.6464 -3.9400 -0.6916 12 7 2.2639 -2.8203 0.0457 13 16 3.7379 -2.2564 -0.4563 14 8 3.5120 -1.5832 -1.6871 15 8 4.3345 -1.6327 0.6726 16 7 4.6732 -3.5764 -0.8099 17 6 4.6672 -4.1369 -2.1635 18 6 5.5067 -4.1836 0.2306 19 6 4.9403 -5.5285 0.6068 20 1 4.1014 -5.9332 0.0601 21 6 5.4932 -6.2425 1.6487 22 7 4.9986 -7.4159 1.9773 23 14 6.9439 -5.5423 2.5946 24 1 6.4465 -4.7362 3.7383 25 1 7.7869 -6.6543 3.1023 26 1 7.7514 -4.6798 1.6951 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9564 -0.8899 33 1 1.6769 1.9563 0.8900 34 1 1.6054 -0.2618 2.1369 35 1 3.1264 -0.6445 1.2951 36 1 3.1743 -3.0050 2.4840 37 1 1.7822 -2.3178 3.3482 38 1 1.7611 -4.6923 3.5261 39 1 0.3976 -4.1369 2.5460 40 1 2.9334 -5.0067 1.1785 41 1 1.7936 -6.2276 1.7949 42 1 0.8773 -5.9173 -0.2791 43 1 0.0365 -4.6109 0.5849 44 1 2.4109 -4.4328 -1.2922 45 1 0.8768 -3.5442 -1.3541 46 1 5.4426 -3.6558 -2.7595 47 1 4.8598 -5.2087 -2.1137 48 1 3.6947 -3.9636 -2.6242 49 1 6.5223 -4.3091 -0.1446 50 1 5.5208 -3.5371 1.1081 51 1 5.3873 -7.9180 2.7105 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122302164.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:04 Heat of formation + Delta-G solvation = -90.301440 kcal Electronic energy + Delta-G solvation = -31255.111102 eV Core-core repulsion = 27508.756039 eV Total energy + Delta-G solvation = -3746.355063 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.34284 -38.34881 -37.83014 -37.17996 -36.40745 -34.55518 -34.23667 -33.43871 -30.22460 -28.76696 -28.00138 -26.91057 -26.77758 -24.60192 -23.72340 -22.02948 -21.40279 -20.70173 -19.68673 -19.07902 -18.41873 -17.90176 -17.47974 -16.88185 -16.33789 -16.09379 -15.73826 -15.51223 -15.24101 -15.20279 -14.78326 -14.58417 -14.37857 -14.15230 -13.88270 -13.74468 -13.60957 -13.53843 -13.30528 -13.20581 -13.14874 -12.96346 -12.94527 -12.86560 -12.63375 -12.41843 -12.25919 -12.15433 -12.06549 -11.86960 -11.77278 -11.49647 -11.39221 -11.25279 -11.06231 -10.95167 -10.83247 -10.62881 -9.82048 -9.72228 -8.21960 -6.20414 -0.30804 1.34001 1.40029 1.45416 1.88946 2.36702 2.47678 3.11967 3.48133 3.56186 3.76647 3.96394 3.99183 4.08207 4.18059 4.23039 4.27117 4.34363 4.42809 4.50189 4.59339 4.63316 4.71257 4.77259 4.80368 4.83980 4.88168 4.91715 4.94966 4.97566 5.03657 5.04776 5.09160 5.17667 5.22066 5.24237 5.31385 5.34771 5.41767 5.45575 5.47959 5.50871 5.55239 5.61506 5.65882 5.77496 5.96044 6.10469 6.37474 6.80633 7.39401 8.90893 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014443 B = 0.006064 C = 0.005548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.197649 B = 4616.163848 C = 5045.770062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.125 4.125 3 C -0.147 4.147 4 C -0.205 4.205 5 C 0.170 3.830 6 H 0.112 0.888 7 C -0.133 4.133 8 C -0.103 4.103 9 C -0.145 4.145 10 C -0.110 4.110 11 C 0.118 3.882 12 N -0.986 5.986 13 S 2.790 3.210 14 O -1.003 7.003 15 O -1.001 7.001 16 N -0.999 5.999 17 C 0.090 3.910 18 C 0.221 3.779 19 C -0.515 4.515 20 H 0.074 0.926 21 C 0.039 3.961 22 N -0.921 5.921 23 Si 0.900 3.100 24 H -0.276 1.276 25 H -0.283 1.283 26 H -0.253 1.253 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.038 0.962 37 H 0.084 0.916 38 H 0.036 0.964 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.031 0.969 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.032 0.968 50 H 0.033 0.967 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.300 10.369 -3.781 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.143 4.143 3 C -0.204 4.204 4 C -0.243 4.243 5 C 0.064 3.936 6 H 0.129 0.871 7 C -0.172 4.172 8 C -0.141 4.141 9 C -0.182 4.182 10 C -0.149 4.149 11 C -0.007 4.007 12 N -0.827 5.827 13 S 2.801 3.199 14 O -0.986 6.986 15 O -0.985 6.985 16 N -0.840 5.840 17 C -0.055 4.055 18 C 0.096 3.904 19 C -0.554 4.554 20 H 0.092 0.908 21 C -0.161 4.161 22 N -0.561 5.561 23 Si 0.726 3.274 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.177 1.177 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.056 0.944 37 H 0.102 0.898 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.050 0.950 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.079 0.921 47 H 0.098 0.902 48 H 0.095 0.905 49 H 0.050 0.950 50 H 0.051 0.949 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.009 11.117 -3.781 15.429 hybrid contribution 1.060 -0.784 0.904 1.599 sum -8.949 10.333 -2.877 13.969 Atomic orbital electron populations 1.21800 0.92926 1.02359 1.02360 1.21453 0.98411 0.96873 0.97600 1.21831 1.00091 0.95766 1.02727 1.23232 1.06343 0.94302 1.00436 1.20883 0.99027 0.90172 0.83534 0.87068 1.21312 1.00372 0.96992 0.98507 1.20306 1.00644 0.94997 0.98106 1.21433 1.03841 0.97295 0.95633 1.21576 0.98856 0.98220 0.96259 1.21856 0.98654 0.86481 0.93694 1.57282 1.36762 1.46370 1.42287 1.01822 0.72865 0.72620 0.72599 1.93533 1.85904 1.72268 1.46943 1.93362 1.77750 1.74723 1.52701 1.57276 1.58892 1.49811 1.17983 1.21591 1.02224 1.01008 0.80657 1.19345 0.91181 0.93541 0.86317 1.21394 1.16729 1.01466 1.15815 0.90806 1.25304 0.98334 0.94902 0.97607 1.69961 1.42542 1.13661 1.29898 0.86431 0.81790 0.78763 0.80431 1.20193 1.20832 1.17727 0.92366 0.91985 0.91348 0.92164 0.94569 0.91781 0.90969 0.87813 0.87822 0.94354 0.89754 0.94554 0.90917 0.88725 0.95021 0.91050 0.90196 0.91235 0.89592 0.92086 0.90159 0.90518 0.94990 0.94877 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 8.95 71.98 0.64 -2.07 16 2 C -0.12 -3.29 2.66 -10.79 -0.03 -3.32 16 3 C -0.15 -3.59 9.19 71.98 0.66 -2.93 16 4 C -0.20 -5.79 3.64 30.59 0.11 -5.68 16 5 C 0.17 4.83 1.73 45.99 0.08 4.91 16 6 H 0.11 2.54 6.36 -2.39 -0.02 2.53 16 7 C -0.13 -4.19 5.01 29.39 0.15 -4.05 16 8 C -0.10 -3.27 5.16 28.61 0.15 -3.12 16 9 C -0.14 -5.26 5.45 29.76 0.16 -5.10 16 10 C -0.11 -3.08 5.71 30.22 0.17 -2.91 16 11 C 0.12 3.30 6.23 86.49 0.54 3.84 16 12 N -0.99 -31.34 2.07 -489.87 -1.02 -32.36 16 13 S 2.79 105.99 4.32 -56.49 -0.24 105.75 16 14 O -1.00 -39.23 15.20 -128.00 -1.95 -41.17 16 15 O -1.00 -42.49 12.00 -128.00 -1.54 -44.03 16 16 N -1.00 -39.08 2.79 -543.23 -1.52 -40.60 16 17 C 0.09 2.93 9.21 127.77 1.18 4.10 16 18 C 0.22 9.99 4.63 85.64 0.40 10.38 16 19 C -0.52 -25.59 6.88 25.60 0.18 -25.42 16 20 H 0.07 3.86 7.23 -2.91 -0.02 3.83 16 21 C 0.04 2.06 5.47 84.66 0.46 2.52 16 22 N -0.92 -51.64 13.96 21.45 0.30 -51.34 16 23 Si 0.90 41.86 27.36 68.60 1.88 43.73 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 25 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 26 H -0.25 -11.23 6.70 99.48 0.67 -10.57 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.06 1.16 6.51 -2.39 -0.02 1.14 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.90 4.84 -2.38 -0.01 1.89 16 31 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.45 8.14 -2.39 -0.02 1.44 16 34 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.10 3.64 4.32 -43.94 -0.19 3.45 16 36 H 0.04 1.51 7.47 -2.38 -0.02 1.49 16 37 H 0.08 2.25 8.11 -2.39 -0.02 2.23 16 38 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.07 1.86 7.35 -2.39 -0.02 1.84 16 40 H 0.09 4.07 3.60 -2.39 -0.01 4.06 16 41 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.08 1.82 7.31 -2.38 -0.02 1.80 16 44 H 0.07 2.06 4.97 -2.39 -0.01 2.05 16 45 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.08 2.64 7.69 -2.38 -0.02 2.62 16 48 H 0.08 2.14 6.59 -2.39 -0.02 2.13 16 49 H 0.03 1.43 7.57 -2.39 -0.02 1.42 16 50 H 0.03 1.59 5.93 -2.39 -0.01 1.57 16 51 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -61.49 372.26 1.45 -60.04 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.68 Total: 28.82 kcal Atomic # 6 Polarization: -33.69 SS G_CDS: 4.85 Total: -28.84 kcal Atomic # 7 Polarization: -122.07 SS G_CDS: -2.23 Total: -124.30 kcal Atomic # 8 Polarization: -81.72 SS G_CDS: -3.48 Total: -85.20 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 1.88 Total: 43.73 kcal Atomic # 16 Polarization: 105.99 SS G_CDS: -0.24 Total: 105.75 kcal Total: -61.49 1.45 -60.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122302164.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.263 kcal (2) G-P(sol) polarization free energy of solvation -61.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds