Wall clock time and date at job start Tue Mar 31 2020 17:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47222 * 2 1 4 4 C 1.53000 * 109.46693 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47509 * 305.00103 * 4 3 2 6 6 C 1.53002 * 109.47308 * 65.00526 * 4 3 2 7 7 C 1.50701 * 109.46585 * 184.99949 * 4 3 2 8 8 O 1.21277 * 120.00554 * 0.02562 * 7 4 3 9 9 N 1.34777 * 119.99888 * 179.97438 * 7 4 3 10 10 C 1.46497 * 120.00148 * 180.27573 * 9 7 4 11 11 C 1.53001 * 109.47410 * 179.72748 * 10 9 7 12 12 N 1.46502 * 109.47055 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99823 * 179.97438 * 12 11 10 14 14 O 1.21587 * 120.00018 * 0.02562 * 13 12 11 15 15 C 1.47642 * 120.00094 * 180.02562 * 13 12 11 16 16 C 1.40009 * 119.89225 * 359.72596 * 15 13 12 17 17 C 1.36325 * 120.10185 * 179.75730 * 16 15 13 18 18 C 1.40885 * 119.88953 * 0.51872 * 17 16 15 19 19 C 1.41113 * 120.09706 * 179.71564 * 18 17 16 20 20 H 1.08004 * 119.99812 * 204.65199 * 19 18 17 21 21 C 1.40220 * 120.00289 * 24.65414 * 19 18 17 22 22 N 1.30648 * 120.00322 * 17.86386 * 21 19 18 23 23 Si 1.86803 * 119.99939 * 197.86254 * 21 19 18 24 24 H 1.48506 * 109.46920 * 90.00149 * 23 21 19 25 25 H 1.48499 * 109.47079 * 209.99551 * 23 21 19 26 26 H 1.48494 * 109.47200 * 329.99986 * 23 21 19 27 27 C 1.40878 * 119.79895 * 359.74181 * 18 17 16 28 28 C 1.36321 * 119.89131 * 359.97438 * 27 18 17 29 29 H 1.08998 * 109.47014 * 300.00082 * 1 2 3 30 30 H 1.09003 * 109.46980 * 59.99908 * 1 2 3 31 31 H 1.08998 * 109.47421 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46787 * 240.00174 * 2 1 3 33 33 H 1.08995 * 109.47052 * 120.00387 * 2 1 3 34 34 H 1.08998 * 109.46688 * 59.99871 * 3 2 1 35 35 H 1.09003 * 109.47218 * 299.99946 * 3 2 1 36 36 H 1.08999 * 109.47140 * 179.97438 * 6 4 3 37 37 H 1.09003 * 109.46555 * 299.99323 * 6 4 3 38 38 H 1.08998 * 109.47181 * 59.99376 * 6 4 3 39 39 H 0.96996 * 120.00027 * 0.02562 * 9 7 4 40 40 H 1.09001 * 109.47444 * 299.72826 * 10 9 7 41 41 H 1.09006 * 109.47120 * 59.72990 * 10 9 7 42 42 H 1.08999 * 109.47309 * 300.00138 * 11 10 9 43 43 H 1.09006 * 109.47150 * 60.00430 * 11 10 9 44 44 H 0.96996 * 120.00126 * 0.02562 * 12 11 10 45 45 H 1.07993 * 119.95100 * 0.02562 * 16 15 13 46 46 H 1.08001 * 120.05184 * 180.22906 * 17 16 15 47 47 H 0.96994 * 120.00100 * 180.02562 * 22 21 19 48 48 H 1.07997 * 120.06033 * 179.97438 * 27 18 17 49 49 H 1.07995 * 119.95034 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4423 0.0006 5 1 3.9330 0.8530 0.8427 6 6 4.0806 0.8326 -1.3065 7 6 4.0723 2.8578 0.1245 8 8 3.2843 3.7761 0.2048 9 7 5.3974 3.1030 0.1470 10 6 5.8857 4.4784 0.2734 11 6 7.4157 4.4779 0.2802 12 7 7.9040 5.8533 0.4073 13 6 9.2290 6.0980 0.4360 14 8 10.0192 5.1773 0.3559 15 6 9.7211 7.4840 0.5646 16 6 8.8094 8.5430 0.6508 17 6 9.2590 9.8240 0.7747 18 6 10.6437 10.0823 0.8048 19 6 11.1139 11.4071 0.9268 20 1 12.0973 11.6667 0.5634 21 6 10.3046 12.3866 1.5200 22 7 9.2892 12.0333 2.2623 23 14 10.6783 14.1966 1.2488 24 1 9.9507 14.6776 0.0469 25 1 10.2424 14.9753 2.4358 26 1 12.1387 14.3759 1.0482 27 6 11.5573 9.0139 0.7122 28 6 11.0982 7.7357 0.5944 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6766 1.9562 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 5.1706 0.8329 -1.3062 37 1 3.7172 -0.1912 -1.3960 38 1 3.7176 1.4219 -2.1485 39 1 6.0277 2.3686 0.0831 40 1 5.5264 5.0705 -0.5683 41 1 5.5184 4.9103 1.2045 42 1 7.7751 3.8859 1.1219 43 1 7.7830 4.0461 -0.6508 44 1 7.2736 6.5877 0.4715 45 1 7.7482 8.3444 0.6236 46 1 8.5549 10.6400 0.8449 47 1 8.7292 12.7109 2.6723 48 1 12.6196 9.2070 0.7344 49 1 11.7977 6.9160 0.5230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292463416.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:30 Heat of formation + Delta-G solvation = -89.882047 kcal Electronic energy + Delta-G solvation = -26698.328873 eV Core-core repulsion = 22816.548045 eV Total energy + Delta-G solvation = -3881.780828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.24894 -39.14443 -37.23556 -36.49333 -35.64648 -33.90831 -33.81659 -32.36452 -30.48227 -29.48065 -28.71768 -27.00788 -25.94353 -24.43039 -22.82268 -21.81705 -21.39832 -20.92572 -20.10393 -19.63688 -17.57628 -17.46013 -16.78227 -16.21832 -16.14060 -15.68623 -15.52674 -15.13207 -14.83343 -14.31342 -14.14397 -14.03943 -13.80929 -13.75222 -13.29033 -13.21405 -12.87369 -12.76441 -12.66392 -12.26927 -12.17160 -11.98339 -11.85131 -11.83596 -11.60582 -11.37420 -11.32433 -11.30491 -11.21486 -10.97548 -10.89112 -10.67751 -10.07747 -9.99172 -9.58742 -9.38306 -9.34138 -9.06024 -8.72952 -7.75157 -7.57721 -7.06133 -4.63175 2.18968 2.41086 2.75618 2.90240 2.94631 2.97030 3.01221 3.72158 3.81977 3.85601 4.31310 4.34414 4.50183 4.52948 4.62137 4.77224 4.86134 4.89837 4.97914 5.10297 5.26811 5.32962 5.40622 5.41458 5.51102 5.53997 5.58568 5.67595 5.72690 5.79658 5.80276 5.93200 5.98905 6.02196 6.04923 6.16558 6.28716 6.74225 6.80060 6.81402 7.01019 7.10357 7.20777 7.40633 7.61108 7.75305 7.83359 7.97143 8.04202 8.14714 8.37257 8.60383 8.72407 8.98881 9.85849 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.001672 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.733039 B =16740.664287 C =17853.601190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.102 4.102 4 C -0.111 4.111 5 H 0.098 0.902 6 C -0.147 4.147 7 C 0.516 3.484 8 O -0.537 6.537 9 N -0.727 5.727 10 C 0.107 3.893 11 C 0.115 3.885 12 N -0.740 5.740 13 C 0.574 3.426 14 O -0.575 6.575 15 C -0.287 4.287 16 C -0.062 4.062 17 C -0.178 4.178 18 C 0.128 3.872 19 C -0.441 4.441 20 H 0.085 0.915 21 C 0.074 3.926 22 N -0.770 5.770 23 Si 0.914 3.086 24 H -0.264 1.264 25 H -0.275 1.275 26 H -0.259 1.259 27 C -0.239 4.239 28 C -0.021 4.021 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.402 0.598 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.400 0.600 45 H 0.089 0.911 46 H 0.121 0.879 47 H 0.287 0.713 48 H 0.098 0.902 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.088 -17.236 -3.609 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.132 4.132 5 H 0.116 0.884 6 C -0.204 4.204 7 C 0.303 3.697 8 O -0.414 6.414 9 N -0.379 5.379 10 C -0.017 4.017 11 C -0.010 4.010 12 N -0.395 5.395 13 C 0.370 3.630 14 O -0.457 6.457 15 C -0.291 4.291 16 C -0.082 4.082 17 C -0.197 4.197 18 C 0.125 3.875 19 C -0.469 4.469 20 H 0.104 0.896 21 C -0.147 4.147 22 N -0.393 5.393 23 Si 0.738 3.262 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.183 1.183 27 C -0.258 4.258 28 C -0.040 4.040 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.237 0.763 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.236 0.764 45 H 0.107 0.893 46 H 0.138 0.862 47 H 0.098 0.902 48 H 0.117 0.883 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.295 -17.116 -3.443 21.945 hybrid contribution 0.093 0.857 0.079 0.865 sum -13.203 -16.259 -3.364 21.213 Atomic orbital electron populations 1.21763 0.95714 1.01512 1.02052 1.21601 0.96098 0.96566 1.02061 1.21446 0.92083 0.96742 1.03681 1.21352 0.98029 0.93139 1.00683 0.88407 1.21847 1.01204 1.01516 0.95846 1.20711 0.81863 0.91538 0.75629 1.90719 1.55234 1.46468 1.48947 1.45849 1.07374 1.09246 1.75464 1.21485 0.93559 0.83561 1.03118 1.21217 0.91616 0.85824 1.02362 1.45726 1.08107 1.07503 1.78133 1.18583 0.80556 0.89745 0.74157 1.90634 1.55426 1.46788 1.52860 1.18852 0.94293 0.90262 1.25707 1.20479 0.96191 0.93375 0.98112 1.20981 0.96126 0.95279 1.07305 1.17799 0.91746 0.92568 0.85384 1.19876 1.02056 0.92971 1.31998 0.89647 1.26108 0.93734 1.02423 0.92468 1.69739 1.13040 1.37159 1.19403 0.86197 0.80422 0.80557 0.79046 1.18904 1.19995 1.18251 1.20713 0.98134 0.92251 1.14741 1.20354 0.93482 0.96048 0.94118 0.92655 0.92673 0.92800 0.91722 0.92010 0.91042 0.91220 0.92069 0.91073 0.91954 0.76312 0.90719 0.90696 0.91460 0.91455 0.76444 0.89277 0.86169 0.90164 0.88348 0.88099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.13 -0.71 5.69 -26.73 -0.15 -0.86 16 3 C -0.10 -0.77 4.03 -26.73 -0.11 -0.88 16 4 C -0.11 -0.78 2.72 -91.77 -0.25 -1.03 16 5 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 6 C -0.15 -0.79 8.85 37.16 0.33 -0.47 16 7 C 0.52 5.40 7.15 -10.98 -0.08 5.32 16 8 O -0.54 -7.87 15.92 5.56 0.09 -7.78 16 9 N -0.73 -6.58 5.45 -60.29 -0.33 -6.91 16 10 C 0.11 1.16 5.79 -4.04 -0.02 1.14 16 11 C 0.11 1.45 5.79 -4.04 -0.02 1.42 16 12 N -0.74 -11.82 5.50 -61.31 -0.34 -12.16 16 13 C 0.57 11.90 7.76 -12.42 -0.10 11.80 16 14 O -0.58 -13.30 16.32 5.29 0.09 -13.21 16 15 C -0.29 -6.45 5.89 -104.73 -0.62 -7.07 16 16 C -0.06 -1.37 9.47 -39.61 -0.38 -1.74 16 17 C -0.18 -4.31 8.63 -39.27 -0.34 -4.65 16 18 C 0.13 3.24 5.58 -106.81 -0.60 2.65 16 19 C -0.44 -10.89 9.04 -37.75 -0.34 -11.23 16 20 H 0.09 2.01 7.91 -52.48 -0.42 1.60 16 21 C 0.07 1.72 5.14 -17.31 -0.09 1.63 16 22 N -0.77 -18.35 10.95 55.56 0.61 -17.74 16 23 Si 0.91 17.16 29.60 -169.99 -5.03 12.13 16 24 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 25 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 26 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 27 C -0.24 -5.73 9.73 -39.27 -0.38 -6.11 16 28 C -0.02 -0.48 9.52 -39.61 -0.38 -0.86 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.32 6.57 -51.93 -0.34 -0.02 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.64 7.95 -51.93 -0.41 0.23 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.28 7.56 -51.93 -0.39 -0.11 16 37 H 0.07 0.30 6.57 -51.93 -0.34 -0.04 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.40 2.62 7.89 -40.82 -0.32 2.29 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.40 5.78 6.47 -40.82 -0.26 5.51 16 45 H 0.09 1.65 6.37 -52.49 -0.33 1.31 16 46 H 0.12 2.96 6.16 -52.49 -0.32 2.64 16 47 H 0.29 6.15 8.29 -40.82 -0.34 5.81 16 48 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 49 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 LS Contribution 402.76 15.07 6.07 6.07 Total: -1.00 -30.48 402.76 -9.75 -40.23 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -7.75 Total: 10.82 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -3.15 Total: -11.44 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: -0.06 Total: -36.81 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: 0.17 Total: -20.99 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.48 -9.75 -40.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292463416.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.651 kcal (2) G-P(sol) polarization free energy of solvation -30.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds