Wall clock time and date at job start Tue Mar 31 2020 17:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47222 * 2 1 4 4 C 1.53000 * 109.46693 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47509 * 305.00103 * 4 3 2 6 6 C 1.53002 * 109.47308 * 65.00526 * 4 3 2 7 7 C 1.50701 * 109.46585 * 184.99949 * 4 3 2 8 8 O 1.21277 * 120.00554 * 0.02562 * 7 4 3 9 9 N 1.34777 * 119.99888 * 179.97438 * 7 4 3 10 10 C 1.46497 * 120.00148 * 180.27573 * 9 7 4 11 11 C 1.53001 * 109.47410 * 179.72748 * 10 9 7 12 12 N 1.46502 * 109.47055 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99823 * 179.97438 * 12 11 10 14 14 O 1.21587 * 120.00018 * 0.02562 * 13 12 11 15 15 C 1.47642 * 120.00094 * 180.02562 * 13 12 11 16 16 C 1.40009 * 119.89225 * 359.72596 * 15 13 12 17 17 C 1.36325 * 120.10185 * 179.75730 * 16 15 13 18 18 C 1.40885 * 119.88953 * 0.51872 * 17 16 15 19 19 C 1.41113 * 120.09706 * 179.71564 * 18 17 16 20 20 H 1.08004 * 119.99812 * 204.65199 * 19 18 17 21 21 C 1.40220 * 120.00289 * 24.65414 * 19 18 17 22 22 N 1.30648 * 120.00322 * 17.86386 * 21 19 18 23 23 Si 1.86803 * 119.99939 * 197.86254 * 21 19 18 24 24 H 1.48506 * 109.46920 * 90.00149 * 23 21 19 25 25 H 1.48499 * 109.47079 * 209.99551 * 23 21 19 26 26 H 1.48494 * 109.47200 * 329.99986 * 23 21 19 27 27 C 1.40878 * 119.79895 * 359.74181 * 18 17 16 28 28 C 1.36321 * 119.89131 * 359.97438 * 27 18 17 29 29 H 1.08998 * 109.47014 * 300.00082 * 1 2 3 30 30 H 1.09003 * 109.46980 * 59.99908 * 1 2 3 31 31 H 1.08998 * 109.47421 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46787 * 240.00174 * 2 1 3 33 33 H 1.08995 * 109.47052 * 120.00387 * 2 1 3 34 34 H 1.08998 * 109.46688 * 59.99871 * 3 2 1 35 35 H 1.09003 * 109.47218 * 299.99946 * 3 2 1 36 36 H 1.08999 * 109.47140 * 179.97438 * 6 4 3 37 37 H 1.09003 * 109.46555 * 299.99323 * 6 4 3 38 38 H 1.08998 * 109.47181 * 59.99376 * 6 4 3 39 39 H 0.96996 * 120.00027 * 0.02562 * 9 7 4 40 40 H 1.09001 * 109.47444 * 299.72826 * 10 9 7 41 41 H 1.09006 * 109.47120 * 59.72990 * 10 9 7 42 42 H 1.08999 * 109.47309 * 300.00138 * 11 10 9 43 43 H 1.09006 * 109.47150 * 60.00430 * 11 10 9 44 44 H 0.96996 * 120.00126 * 0.02562 * 12 11 10 45 45 H 1.07993 * 119.95100 * 0.02562 * 16 15 13 46 46 H 1.08001 * 120.05184 * 180.22906 * 17 16 15 47 47 H 0.96994 * 120.00100 * 180.02562 * 22 21 19 48 48 H 1.07997 * 120.06033 * 179.97438 * 27 18 17 49 49 H 1.07995 * 119.95034 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4423 0.0006 5 1 3.9330 0.8530 0.8427 6 6 4.0806 0.8326 -1.3065 7 6 4.0723 2.8578 0.1245 8 8 3.2843 3.7761 0.2048 9 7 5.3974 3.1030 0.1470 10 6 5.8857 4.4784 0.2734 11 6 7.4157 4.4779 0.2802 12 7 7.9040 5.8533 0.4073 13 6 9.2290 6.0980 0.4360 14 8 10.0192 5.1773 0.3559 15 6 9.7211 7.4840 0.5646 16 6 8.8094 8.5430 0.6508 17 6 9.2590 9.8240 0.7747 18 6 10.6437 10.0823 0.8048 19 6 11.1139 11.4071 0.9268 20 1 12.0973 11.6667 0.5634 21 6 10.3046 12.3866 1.5200 22 7 9.2892 12.0333 2.2623 23 14 10.6783 14.1966 1.2488 24 1 9.9507 14.6776 0.0469 25 1 10.2424 14.9753 2.4358 26 1 12.1387 14.3759 1.0482 27 6 11.5573 9.0139 0.7122 28 6 11.0982 7.7357 0.5944 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 1.6766 1.9562 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 5.1706 0.8329 -1.3062 37 1 3.7172 -0.1912 -1.3960 38 1 3.7176 1.4219 -2.1485 39 1 6.0277 2.3686 0.0831 40 1 5.5264 5.0705 -0.5683 41 1 5.5184 4.9103 1.2045 42 1 7.7751 3.8859 1.1219 43 1 7.7830 4.0461 -0.6508 44 1 7.2736 6.5877 0.4715 45 1 7.7482 8.3444 0.6236 46 1 8.5549 10.6400 0.8449 47 1 8.7292 12.7109 2.6723 48 1 12.6196 9.2070 0.7344 49 1 11.7977 6.9160 0.5230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292463416.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:29 Heat of formation + Delta-G solvation = -108.114612 kcal Electronic energy + Delta-G solvation = -26699.119497 eV Core-core repulsion = 22816.548045 eV Total energy + Delta-G solvation = -3882.571451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.13061 -40.71363 -38.95433 -37.25706 -36.65171 -35.67681 -35.03320 -32.97596 -32.13145 -31.30437 -29.92553 -27.63956 -27.47209 -25.28113 -23.92829 -23.29089 -22.69735 -22.07779 -21.26697 -20.77475 -19.36989 -18.66072 -17.92865 -17.41997 -17.03936 -16.97687 -16.54755 -16.40252 -15.75853 -15.74154 -15.41799 -15.12753 -15.01670 -14.77483 -14.74281 -14.43683 -14.00398 -13.90306 -13.67525 -13.48348 -13.23910 -13.14679 -12.92660 -12.87478 -12.86710 -12.72620 -12.59955 -12.37775 -12.14379 -11.84815 -11.77100 -11.72382 -11.39995 -11.37260 -11.13545 -10.90487 -10.69389 -10.23510 -10.11137 -9.57733 -9.41586 -8.80144 -6.49081 0.42942 1.15107 1.38595 1.43135 1.53179 1.59920 1.83023 2.11050 2.16984 2.65849 2.77624 3.57784 3.68638 3.71176 3.82635 3.95500 4.01084 4.24662 4.30584 4.31191 4.36096 4.39631 4.42045 4.45078 4.63961 4.79608 4.80773 4.85311 4.91891 4.92722 4.96705 5.02577 5.03938 5.13509 5.15414 5.22822 5.28967 5.29998 5.32431 5.45099 5.49091 5.52559 5.58697 5.81500 5.93361 5.99171 6.22449 6.47062 6.53646 6.63770 6.76737 6.88388 7.19362 7.38948 8.15003 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.021722 B = 0.001672 C = 0.001568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.733039 B =16740.664287 C =17853.601190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.100 4.100 4 C -0.104 4.104 5 H 0.121 0.879 6 C -0.144 4.144 7 C 0.512 3.488 8 O -0.585 6.585 9 N -0.715 5.715 10 C 0.118 3.882 11 C 0.120 3.880 12 N -0.726 5.726 13 C 0.576 3.424 14 O -0.601 6.601 15 C -0.295 4.295 16 C -0.054 4.054 17 C -0.199 4.199 18 C 0.101 3.899 19 C -0.473 4.473 20 H 0.086 0.914 21 C 0.038 3.962 22 N -0.798 5.798 23 Si 0.987 3.013 24 H -0.259 1.259 25 H -0.265 1.265 26 H -0.257 1.257 27 C -0.253 4.253 28 C -0.031 4.031 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.417 0.583 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.409 0.591 45 H 0.123 0.877 46 H 0.112 0.888 47 H 0.297 0.703 48 H 0.104 0.896 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.754 -18.431 -3.846 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.138 4.138 4 C -0.125 4.125 5 H 0.139 0.861 6 C -0.201 4.201 7 C 0.300 3.700 8 O -0.465 6.465 9 N -0.369 5.369 10 C -0.007 4.007 11 C -0.005 4.005 12 N -0.379 5.379 13 C 0.370 3.630 14 O -0.485 6.485 15 C -0.300 4.300 16 C -0.073 4.073 17 C -0.218 4.218 18 C 0.097 3.903 19 C -0.500 4.500 20 H 0.104 0.896 21 C -0.181 4.181 22 N -0.422 5.422 23 Si 0.807 3.193 24 H -0.184 1.184 25 H -0.190 1.190 26 H -0.180 1.180 27 C -0.272 4.272 28 C -0.050 4.050 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.255 0.745 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.246 0.754 45 H 0.141 0.859 46 H 0.130 0.870 47 H 0.108 0.892 48 H 0.123 0.877 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.975 -18.357 -3.682 23.363 hybrid contribution 0.248 1.118 0.164 1.157 sum -13.726 -17.239 -3.518 22.315 Atomic orbital electron populations 1.21790 0.95968 1.02042 1.01522 1.21576 0.95883 0.95139 1.03148 1.21411 0.92706 0.97799 1.01911 1.21391 0.97416 0.91061 1.02593 0.86080 1.21863 1.02006 1.02098 0.94161 1.21387 0.81649 0.92535 0.74397 1.90702 1.56415 1.48164 1.51208 1.45743 1.07452 1.08998 1.74665 1.21253 0.92138 0.84635 1.02690 1.21320 0.92542 0.83740 1.02850 1.45566 1.06655 1.09468 1.76173 1.18303 0.81885 0.88577 0.74265 1.90619 1.56537 1.47124 1.54235 1.19167 0.94215 0.91724 1.24866 1.20739 0.97916 0.92313 0.96348 1.21010 0.95768 0.96077 1.08927 1.18152 0.92580 0.93351 0.86172 1.20134 1.02836 0.93694 1.33375 0.89621 1.26923 0.93200 1.06498 0.91476 1.69760 1.13734 1.39005 1.19665 0.85109 0.80194 0.74776 0.79192 1.18380 1.18976 1.18030 1.20856 0.98501 0.92491 1.15364 1.20516 0.94359 0.95905 0.94243 0.93336 0.93151 0.91698 0.90425 0.90987 0.93057 0.92875 0.90790 0.89211 0.93177 0.74518 0.91158 0.91276 0.91006 0.90821 0.75435 0.85908 0.86965 0.89187 0.87741 0.87683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.91 71.98 0.71 -0.89 16 2 C -0.12 -1.13 5.69 30.59 0.17 -0.95 16 3 C -0.10 -1.45 4.03 30.59 0.12 -1.32 16 4 C -0.10 -1.25 2.72 -11.54 -0.03 -1.28 16 5 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 6 C -0.14 -1.18 8.85 71.98 0.64 -0.55 16 7 C 0.51 10.12 7.15 87.66 0.63 10.74 16 8 O -0.59 -17.18 15.92 -3.02 -0.05 -17.22 16 9 N -0.72 -11.57 5.45 -463.06 -2.52 -14.10 16 10 C 0.12 2.36 5.79 86.38 0.50 2.86 16 11 C 0.12 2.76 5.79 86.38 0.50 3.26 16 12 N -0.73 -21.86 5.50 -466.14 -2.57 -24.42 16 13 C 0.58 23.19 7.76 86.73 0.67 23.87 16 14 O -0.60 -27.19 16.32 -3.99 -0.07 -27.25 16 15 C -0.30 -13.19 5.89 -19.93 -0.12 -13.31 16 16 C -0.05 -2.35 9.47 22.25 0.21 -2.14 16 17 C -0.20 -9.77 8.63 22.47 0.19 -9.57 16 18 C 0.10 5.21 5.58 -21.28 -0.12 5.09 16 19 C -0.47 -23.83 9.04 23.46 0.21 -23.62 16 20 H 0.09 4.14 7.91 -2.91 -0.02 4.11 16 21 C 0.04 1.77 5.14 85.35 0.44 2.20 16 22 N -0.80 -38.20 10.95 21.87 0.24 -37.96 16 23 Si 0.99 34.78 29.60 68.60 2.03 36.81 16 24 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 25 H -0.27 -8.87 7.11 99.48 0.71 -8.16 16 26 H -0.26 -8.87 7.11 99.48 0.71 -8.16 16 27 C -0.25 -12.41 9.73 22.47 0.22 -12.19 16 28 C -0.03 -1.46 9.52 22.25 0.21 -1.25 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.08 0.55 6.57 -2.38 -0.02 0.53 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 0.94 7.95 -2.39 -0.02 0.92 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.07 0.43 7.56 -2.39 -0.02 0.42 16 37 H 0.09 0.44 6.57 -2.39 -0.02 0.43 16 38 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.42 4.26 7.89 -92.71 -0.73 3.53 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.50 16 41 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 42 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.41 10.97 6.47 -92.71 -0.60 10.37 16 45 H 0.12 4.34 6.37 -2.91 -0.02 4.32 16 46 H 0.11 5.63 6.16 -2.91 -0.02 5.61 16 47 H 0.30 12.64 8.29 -92.71 -0.77 11.88 16 48 H 0.10 4.82 8.06 -2.91 -0.02 4.79 16 49 H 0.11 4.78 7.63 -2.91 -0.02 4.75 16 Total: -1.00 -67.15 402.76 1.87 -65.28 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: -0.37 Total: 37.92 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 5.17 Total: -19.05 kcal Atomic # 7 Polarization: -71.63 SS G_CDS: -4.85 Total: -76.48 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -0.11 Total: -44.48 kcal Atomic # 14 Polarization: 34.78 SS G_CDS: 2.03 Total: 36.81 kcal Total: -67.15 1.87 -65.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292463416.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.836 kcal (2) G-P(sol) polarization free energy of solvation -67.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds