Wall clock time and date at job start Tue Mar 31 2020 16:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46877 * 2 1 4 4 C 1.52996 * 109.47248 * 184.95364 * 3 2 1 5 5 C 1.52992 * 109.47434 * 184.82495 * 4 3 2 6 6 H 1.09006 * 110.43508 * 303.73478 * 5 4 3 7 7 C 1.54890 * 110.48906 * 66.27460 * 5 4 3 8 8 C 1.54887 * 102.75000 * 156.75412 * 7 5 4 9 9 C 1.54268 * 104.19656 * 322.06278 * 8 7 5 10 10 C 1.53874 * 106.63935 * 23.58179 * 9 8 7 11 11 H 1.09003 * 110.02437 * 119.31307 * 10 9 8 12 12 N 1.46499 * 110.03060 * 240.74093 * 10 9 8 13 13 S 1.65609 * 119.99827 * 265.64140 * 12 10 9 14 14 O 1.42098 * 106.40163 * 51.24865 * 13 12 10 15 15 O 1.42100 * 106.39824 * 184.16735 * 13 12 10 16 16 N 1.65592 * 107.21877 * 297.70935 * 13 12 10 17 17 C 1.46498 * 120.00290 * 86.13524 * 16 13 12 18 18 C 1.53008 * 109.46907 * 94.99744 * 17 16 13 19 19 C 1.46502 * 120.00025 * 266.13620 * 16 13 12 20 20 C 1.50694 * 109.47272 * 98.99032 * 19 16 13 21 21 H 1.08002 * 120.00067 * 5.34601 * 20 19 16 22 22 C 1.37881 * 120.00224 * 185.34379 * 20 19 16 23 23 N 1.31512 * 120.00083 * 5.10294 * 22 20 19 24 24 Si 1.86803 * 120.00329 * 185.09962 * 22 20 19 25 25 H 1.48504 * 109.46726 * 4.99591 * 24 22 20 26 26 H 1.48491 * 109.47031 * 124.99759 * 24 22 20 27 27 H 1.48496 * 109.47142 * 245.00231 * 24 22 20 28 28 H 1.08999 * 109.47005 * 299.99991 * 1 2 3 29 29 H 1.09001 * 109.47234 * 60.00418 * 1 2 3 30 30 H 1.08996 * 109.46565 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47005 * 240.00009 * 2 1 3 32 32 H 1.09001 * 109.47234 * 119.99582 * 2 1 3 33 33 H 1.08993 * 109.47530 * 64.95032 * 3 2 1 34 34 H 1.09008 * 109.46901 * 304.95074 * 3 2 1 35 35 H 1.09002 * 109.47100 * 64.82016 * 4 3 2 36 36 H 1.09009 * 109.46857 * 304.82381 * 4 3 2 37 37 H 1.09002 * 110.74953 * 38.44161 * 7 5 4 38 38 H 1.08997 * 110.92031 * 275.14727 * 7 5 4 39 39 H 1.08998 * 110.48658 * 203.38344 * 8 7 5 40 40 H 1.09003 * 110.59810 * 80.79451 * 8 7 5 41 41 H 1.08997 * 110.03282 * 142.89843 * 9 8 7 42 42 H 1.09002 * 110.02854 * 264.27541 * 9 8 7 43 43 H 0.96994 * 120.00030 * 85.64685 * 12 10 9 44 44 H 1.09001 * 109.47508 * 214.99880 * 17 16 13 45 45 H 1.09001 * 109.47256 * 335.00160 * 17 16 13 46 46 H 1.08992 * 109.47032 * 300.00384 * 18 17 16 47 47 H 1.08998 * 109.47164 * 60.00545 * 18 17 16 48 48 H 1.09001 * 109.46694 * 180.02562 * 18 17 16 49 49 H 1.09001 * 109.47564 * 218.99132 * 19 16 13 50 50 H 1.09004 * 109.47095 * 338.98731 * 19 16 13 51 51 H 0.96995 * 120.00597 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5649 1.4444 -0.1246 5 6 4.0847 2.8783 -0.0038 6 1 3.6136 3.5180 -0.7502 7 6 3.8295 3.4293 1.4211 8 6 4.8930 4.5479 1.5505 9 6 6.1336 3.9752 0.8343 10 6 5.6207 2.9130 -0.1538 11 1 5.8906 3.1900 -1.1729 12 7 6.1879 1.6036 0.1779 13 16 7.5660 1.0826 -0.5784 14 8 8.5168 2.1303 -0.4463 15 8 7.7997 -0.2416 -0.1188 16 7 7.2232 0.9632 -2.1941 17 6 7.3548 2.1379 -3.0595 18 6 8.7329 2.1298 -3.7242 19 6 6.7884 -0.3170 -2.7580 20 6 5.2876 -0.3224 -2.8937 21 1 4.7221 0.5708 -2.6721 22 6 4.6362 -1.4674 -3.3008 23 7 5.3120 -2.5822 -3.4739 24 14 2.7936 -1.4353 -3.6065 25 1 2.2918 -0.0452 -3.4603 26 1 2.5114 -1.9214 -4.9809 27 1 2.1130 -2.3134 -2.6213 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.7509 1.9302 0.9309 34 1 1.6060 1.9813 -0.8424 35 1 3.8508 1.0346 -1.0933 36 1 3.9950 0.8340 0.6695 37 1 3.9915 2.6538 2.1697 38 1 2.8238 3.8410 1.5048 39 1 5.1147 4.7439 2.5996 40 1 4.5539 5.4585 1.0566 41 1 6.6523 4.7676 0.2949 42 1 6.8051 3.5166 1.5602 43 1 5.7563 1.0419 0.8404 44 1 6.5811 2.1123 -3.8269 45 1 7.2447 3.0432 -2.4626 46 1 9.5065 2.1554 -2.9569 47 1 8.8431 1.2246 -4.3212 48 1 8.8309 3.0041 -4.3678 49 1 7.2424 -0.4548 -3.7393 50 1 7.0964 -1.1281 -2.0981 51 1 4.8539 -3.3876 -3.7606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337085234.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:19 Heat of formation + Delta-G solvation = -131.199710 kcal Electronic energy + Delta-G solvation = -29799.617026 eV Core-core repulsion = 26051.488481 eV Total energy + Delta-G solvation = -3748.128545 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.11097 -38.24467 -37.65428 -36.83820 -36.27521 -34.66217 -34.11627 -32.16577 -31.49086 -28.48767 -28.23539 -27.81248 -24.95683 -24.08354 -23.24309 -22.13396 -21.24452 -20.79649 -20.13611 -18.72715 -18.41637 -18.21367 -17.40310 -16.73481 -16.42064 -16.13169 -16.08609 -15.47030 -15.22084 -14.85576 -14.73847 -14.55231 -14.44837 -13.85581 -13.82101 -13.71620 -13.54354 -13.34177 -13.27041 -13.12752 -13.01196 -12.97937 -12.77787 -12.66612 -12.38241 -12.30441 -12.16734 -12.08314 -12.01769 -11.85965 -11.75620 -11.58026 -11.54568 -11.44986 -11.33744 -11.11325 -10.93414 -10.56083 -10.30084 -9.73626 -8.14390 -6.25018 -0.21449 1.38712 1.41944 1.51841 2.04730 2.42748 2.66783 3.18250 3.49135 3.57380 3.76267 3.83406 3.98748 4.13129 4.20591 4.28400 4.39229 4.45177 4.46436 4.50907 4.61490 4.66777 4.69020 4.73149 4.74871 4.85584 4.88765 4.96016 4.99984 5.00254 5.02608 5.13627 5.16693 5.21214 5.27122 5.28654 5.32557 5.37410 5.39609 5.42464 5.47179 5.53195 5.60421 5.63369 5.70813 5.84488 5.95065 6.17261 6.23977 6.88641 7.43989 8.94415 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008465 B = 0.007365 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3307.122619 B = 3800.854506 C = 6202.107518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C -0.107 4.107 4 C -0.121 4.121 5 C -0.086 4.086 6 H 0.094 0.906 7 C -0.114 4.114 8 C -0.116 4.116 9 C -0.140 4.140 10 C 0.146 3.854 11 H 0.082 0.918 12 N -1.108 6.108 13 S 2.795 3.205 14 O -1.003 7.003 15 O -1.026 7.026 16 N -0.994 5.994 17 C 0.119 3.881 18 C -0.168 4.168 19 C 0.259 3.741 20 C -0.525 4.525 21 H 0.082 0.918 22 C 0.014 3.986 23 N -0.931 5.931 24 Si 0.941 3.059 25 H -0.249 1.249 26 H -0.289 1.289 27 H -0.283 1.283 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.031 0.969 32 H 0.060 0.940 33 H 0.081 0.919 34 H 0.059 0.941 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.060 0.940 43 H 0.417 0.583 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.046 0.954 47 H 0.046 0.954 48 H 0.091 0.909 49 H 0.016 0.984 50 H 0.018 0.982 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.353 15.543 7.345 18.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C -0.144 4.144 4 C -0.159 4.159 5 C -0.105 4.105 6 H 0.112 0.888 7 C -0.151 4.151 8 C -0.153 4.153 9 C -0.179 4.179 10 C 0.039 3.961 11 H 0.100 0.900 12 N -0.870 5.870 13 S 2.804 3.196 14 O -0.986 6.986 15 O -1.010 7.010 16 N -0.835 5.835 17 C -0.006 4.006 18 C -0.227 4.227 19 C 0.136 3.864 20 C -0.565 4.565 21 H 0.099 0.901 22 C -0.185 4.185 23 N -0.571 5.571 24 Si 0.767 3.233 25 H -0.172 1.172 26 H -0.216 1.216 27 H -0.209 1.209 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.253 0.747 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.110 0.890 49 H 0.034 0.966 50 H 0.036 0.964 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.416 15.297 7.565 17.904 hybrid contribution -0.965 -1.274 -0.444 1.659 sum -6.381 14.022 7.121 16.972 Atomic orbital electron populations 1.21752 0.94762 1.01594 1.02400 1.21654 0.96895 0.98077 1.00966 1.21542 0.94796 0.95595 1.02506 1.21696 0.95605 0.96357 1.02235 1.22206 0.92622 0.96584 0.99135 0.88804 1.22568 0.99607 0.97824 0.95145 1.22320 0.94003 0.98350 1.00647 1.22705 0.98798 0.97917 0.98518 1.21643 0.94840 0.81005 0.98574 0.89983 1.55857 1.47285 1.28036 1.55869 1.01238 0.73934 0.71615 0.72838 1.93531 1.60080 1.58590 1.86426 1.93528 1.85722 1.40289 1.81502 1.57575 1.83081 1.17683 1.25119 1.21336 0.98329 0.85906 0.95027 1.22197 0.96950 1.02689 1.00909 1.18733 0.94563 0.79312 0.93840 1.21888 0.92404 0.97715 1.44452 0.90056 1.25698 1.02141 0.95020 0.95614 1.70085 1.37812 1.01100 1.48153 0.85779 0.81025 0.79330 0.77151 1.17204 1.21603 1.20888 0.90944 0.92817 0.93269 0.94991 0.92097 0.90006 0.92226 0.92590 0.92655 0.91803 0.89825 0.90942 0.90155 0.90617 0.92077 0.74707 0.89848 0.89662 0.93495 0.93473 0.89039 0.96551 0.96375 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.91 71.98 0.71 -2.61 16 2 C -0.14 -3.81 5.93 30.60 0.18 -3.63 16 3 C -0.11 -2.54 5.13 30.59 0.16 -2.39 16 4 C -0.12 -3.31 3.92 30.59 0.12 -3.19 16 5 C -0.09 -1.87 2.85 -9.69 -0.03 -1.90 16 6 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 7 C -0.11 -1.95 5.48 31.88 0.17 -1.77 16 8 C -0.12 -1.86 6.83 31.67 0.22 -1.65 16 9 C -0.14 -3.03 6.59 31.32 0.21 -2.83 16 10 C 0.15 3.70 3.37 45.75 0.15 3.86 16 11 H 0.08 2.07 5.76 -2.39 -0.01 2.06 16 12 N -1.11 -34.80 4.71 -166.23 -0.78 -35.59 16 13 S 2.80 111.02 5.99 -56.49 -0.34 110.68 16 14 O -1.00 -39.85 16.97 -128.00 -2.17 -42.02 16 15 O -1.03 -50.14 16.59 -128.00 -2.12 -52.27 16 16 N -0.99 -40.20 2.84 -519.83 -1.47 -41.67 16 17 C 0.12 3.87 5.60 86.38 0.48 4.36 16 18 C -0.17 -5.09 10.24 71.98 0.74 -4.35 16 19 C 0.26 13.03 5.47 85.63 0.47 13.50 16 20 C -0.53 -26.72 9.18 25.60 0.24 -26.49 16 21 H 0.08 3.84 5.89 -2.91 -0.02 3.82 16 22 C 0.01 0.77 5.45 84.66 0.46 1.23 16 23 N -0.93 -54.57 13.28 21.45 0.28 -54.29 16 24 Si 0.94 42.00 28.18 68.60 1.93 43.93 16 25 H -0.25 -10.19 7.11 99.48 0.71 -9.49 16 26 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.03 1.08 6.70 -2.39 -0.02 1.07 16 32 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.08 1.54 7.16 -2.39 -0.02 1.53 16 34 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.06 1.95 6.01 -2.39 -0.01 1.94 16 36 H 0.05 1.55 6.37 -2.38 -0.02 1.54 16 37 H 0.06 1.15 8.03 -2.39 -0.02 1.14 16 38 H 0.08 1.16 7.89 -2.39 -0.02 1.14 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.06 1.48 7.92 -2.39 -0.02 1.47 16 43 H 0.42 12.48 6.93 -96.75 -0.67 11.81 16 44 H 0.08 2.66 8.11 -2.39 -0.02 2.64 16 45 H 0.09 2.34 5.99 -2.39 -0.01 2.32 16 46 H 0.05 1.50 8.05 -2.39 -0.02 1.48 16 47 H 0.05 1.53 8.11 -2.39 -0.02 1.51 16 48 H 0.09 2.11 8.14 -2.39 -0.02 2.10 16 49 H 0.02 0.86 8.10 -2.39 -0.02 0.85 16 50 H 0.02 1.05 6.79 -2.38 -0.02 1.04 16 51 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -67.35 399.39 -0.17 -67.52 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: 0.23 Total: 31.57 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: 4.28 Total: -27.86 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -1.97 Total: -131.54 kcal Atomic # 8 Polarization: -90.00 SS G_CDS: -4.30 Total: -94.29 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.93 Total: 43.93 kcal Atomic # 16 Polarization: 111.02 SS G_CDS: -0.34 Total: 110.68 kcal Total: -67.35 -0.17 -67.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337085234.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.680 kcal (2) G-P(sol) polarization free energy of solvation -67.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds