Wall clock time and date at job start Tue Mar 31 2020 17:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47043 * 2 1 4 4 C 1.52993 * 109.47413 * 180.37753 * 3 2 1 5 5 H 1.09004 * 109.70489 * 180.84147 * 4 3 2 6 6 C 1.52768 * 109.50682 * 60.72659 * 4 3 2 7 7 H 1.09004 * 109.35784 * 305.61231 * 6 4 3 8 8 C 1.52995 * 109.59192 * 65.65391 * 6 4 3 9 9 C 1.53044 * 109.38230 * 185.70662 * 6 4 3 10 10 C 1.53039 * 109.53597 * 61.23636 * 9 6 4 11 11 C 1.53185 * 109.31872 * 298.63561 * 10 9 6 12 12 N 1.46923 * 109.58989 * 301.19995 * 4 3 2 13 13 S 1.65601 * 120.62705 * 353.41862 * 12 4 3 14 14 O 1.42101 * 106.40596 * 119.79065 * 13 12 4 15 15 O 1.42096 * 106.40335 * 346.86508 * 13 12 4 16 16 N 1.65601 * 107.21776 * 233.32911 * 13 12 4 17 17 C 1.46497 * 120.00139 * 83.35773 * 16 13 12 18 18 C 1.46505 * 119.99991 * 263.36026 * 16 13 12 19 19 H 1.08995 * 109.47248 * 359.97438 * 18 16 13 20 20 C 1.52995 * 109.47198 * 239.99687 * 18 16 13 21 21 C 1.50701 * 109.47210 * 119.99772 * 18 16 13 22 22 H 1.08001 * 119.99852 * 32.88083 * 21 18 16 23 23 C 1.37873 * 120.00090 * 212.88578 * 21 18 16 24 24 N 1.31513 * 119.99886 * 181.91055 * 23 21 18 25 25 Si 1.86797 * 119.99802 * 1.90240 * 23 21 18 26 26 H 1.48504 * 109.47101 * 91.46349 * 25 23 21 27 27 H 1.48507 * 109.46981 * 211.45794 * 25 23 21 28 28 H 1.48496 * 109.47583 * 331.46193 * 25 23 21 29 29 H 1.08994 * 109.47382 * 299.99249 * 1 2 3 30 30 H 1.08996 * 109.47085 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.46418 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47223 * 240.00596 * 2 1 3 33 33 H 1.08992 * 109.47649 * 120.00275 * 2 1 3 34 34 H 1.09001 * 109.46709 * 60.37649 * 3 2 1 35 35 H 1.09006 * 109.47117 * 300.38027 * 3 2 1 36 36 H 1.09004 * 109.47234 * 179.97438 * 8 6 4 37 37 H 1.08996 * 109.47366 * 299.98464 * 8 6 4 38 38 H 1.09000 * 109.47058 * 59.98246 * 8 6 4 39 39 H 1.09000 * 109.45797 * 301.21699 * 9 6 4 40 40 H 1.08994 * 109.46184 * 181.26275 * 9 6 4 41 41 H 1.09003 * 109.49383 * 178.68301 * 10 9 6 42 42 H 1.09001 * 109.52716 * 58.60723 * 10 9 6 43 43 H 1.09005 * 109.58446 * 294.85070 * 11 10 9 44 44 H 1.08998 * 109.59293 * 174.42376 * 11 10 9 45 45 H 1.08995 * 109.47547 * 94.26819 * 17 16 13 46 46 H 1.09007 * 109.47336 * 214.27139 * 17 16 13 47 47 H 1.08999 * 109.47404 * 334.26649 * 17 16 13 48 48 H 1.09000 * 109.46863 * 54.74300 * 20 18 16 49 49 H 1.08994 * 109.47412 * 174.74211 * 20 18 16 50 50 H 1.09004 * 109.47320 * 294.74439 * 20 18 16 51 51 H 0.97008 * 119.99585 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0095 5 1 3.9375 2.4687 0.0055 6 6 4.0722 0.7413 -1.2703 7 1 3.6281 -0.2522 -1.3324 8 6 3.6757 1.5560 -2.5031 9 6 5.5963 0.6165 -1.2090 10 6 5.9924 -0.2266 0.0052 11 6 5.5125 0.4686 1.2831 12 7 4.0699 0.7230 1.1698 13 16 3.0264 0.2025 2.3456 14 8 3.1628 -1.2107 2.4063 15 8 1.7877 0.8539 2.0999 16 7 3.5843 0.7885 3.7905 17 6 3.2498 2.1530 4.2058 18 6 4.4123 -0.0576 4.6535 19 1 4.5529 -1.0302 4.1820 20 6 3.7183 -0.2420 6.0045 21 6 5.7529 0.5981 4.8629 22 1 5.8282 1.6750 4.8949 23 6 6.8834 -0.1767 5.0135 24 7 8.0474 0.3943 5.2338 25 14 6.7614 -2.0375 4.9050 26 1 6.9929 -2.4678 3.5026 27 1 7.7855 -2.6530 5.7870 28 1 5.4091 -2.4712 5.3389 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6821 1.9544 0.8934 35 1 1.6711 1.9584 -0.8866 36 1 4.0354 1.0542 -3.4014 37 1 2.5902 1.6447 -2.5463 38 1 4.1192 2.5497 -2.4399 39 1 6.0387 1.6089 -1.1220 40 1 5.9582 0.1364 -2.1181 41 1 7.0766 -0.3346 0.0351 42 1 5.5306 -1.2112 -0.0686 43 1 6.0417 1.4136 1.4057 44 1 5.7038 -0.1739 2.1426 45 1 2.3638 2.1329 4.8402 46 1 4.0853 2.5787 4.7618 47 1 3.0518 2.7628 3.3243 48 1 2.7120 -0.6297 5.8460 49 1 4.2871 -0.9456 6.6122 50 1 3.6611 0.7180 6.5177 51 1 8.8427 -0.1509 5.3401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337972777.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:48 Heat of formation + Delta-G solvation = -44.931577 kcal Electronic energy + Delta-G solvation = -30887.977938 eV Core-core repulsion = 27143.590259 eV Total energy + Delta-G solvation = -3744.387678 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.46917 -37.19339 -36.29321 -35.80225 -33.90354 -33.24659 -32.50867 -31.28294 -29.94143 -27.53909 -25.88441 -25.62042 -25.18700 -23.57346 -22.23375 -21.13315 -20.69047 -19.51440 -18.25913 -17.50355 -16.82950 -16.51626 -15.78320 -15.44223 -15.03804 -14.57652 -14.40628 -14.01011 -13.86129 -13.65441 -13.43361 -13.22313 -12.95153 -12.56220 -12.52456 -12.45538 -12.38404 -12.33599 -11.98933 -11.80194 -11.65970 -11.54991 -11.46730 -11.29626 -11.20153 -11.12115 -10.84611 -10.70905 -10.66261 -10.51281 -10.47458 -10.32288 -10.18620 -9.88309 -9.79901 -9.38046 -9.32639 -8.71365 -8.54340 -8.04783 -6.24471 -4.25386 1.21761 3.20198 3.30384 3.38593 3.44919 3.99456 4.28660 4.71012 4.81335 4.89940 4.98346 5.07421 5.11571 5.18676 5.25934 5.37186 5.47415 5.57581 5.59856 5.61463 5.72229 5.78237 5.82355 5.86481 5.91661 6.06635 6.08163 6.09401 6.12034 6.15115 6.17052 6.18633 6.27822 6.30662 6.38331 6.39173 6.43121 6.47783 6.54965 6.61788 6.66077 6.68264 6.90808 6.94660 7.10351 7.19979 7.43631 7.66000 8.37102 8.80582 9.37048 10.87015 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014365 B = 0.006048 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.781801 B = 4628.769412 C = 5599.449627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 C -0.162 4.162 4 C 0.165 3.835 5 H 0.071 0.929 6 C -0.106 4.106 7 H 0.076 0.924 8 C -0.145 4.145 9 C -0.109 4.109 10 C -0.135 4.135 11 C 0.130 3.870 12 N -1.004 6.004 13 S 2.778 3.222 14 O -0.991 6.991 15 O -0.985 6.985 16 N -0.990 5.990 17 C 0.108 3.892 18 C 0.228 3.772 19 H 0.058 0.942 20 C -0.144 4.144 21 C -0.520 4.520 22 H 0.083 0.917 23 C 0.081 3.919 24 N -0.887 5.887 25 Si 0.852 3.148 26 H -0.269 1.269 27 H -0.283 1.283 28 H -0.257 1.257 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.045 0.955 32 H 0.051 0.949 33 H 0.027 0.973 34 H 0.138 0.862 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.043 0.957 46 H 0.077 0.923 47 H 0.052 0.948 48 H 0.026 0.974 49 H 0.054 0.946 50 H 0.053 0.947 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.204 3.090 -11.976 14.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 C -0.201 4.201 4 C 0.058 3.942 5 H 0.089 0.911 6 C -0.126 4.126 7 H 0.095 0.905 8 C -0.202 4.202 9 C -0.146 4.146 10 C -0.174 4.174 11 C 0.005 3.995 12 N -0.843 5.843 13 S 2.792 3.208 14 O -0.975 6.975 15 O -0.970 6.970 16 N -0.831 5.831 17 C -0.038 4.038 18 C 0.124 3.876 19 H 0.076 0.924 20 C -0.204 4.204 21 C -0.560 4.560 22 H 0.101 0.899 23 C -0.123 4.123 24 N -0.524 5.524 25 Si 0.678 3.322 26 H -0.195 1.195 27 H -0.208 1.208 28 H -0.181 1.181 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.045 0.955 34 H 0.156 0.844 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.062 0.938 46 H 0.096 0.904 47 H 0.071 0.929 48 H 0.045 0.955 49 H 0.073 0.927 50 H 0.072 0.928 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.777 2.505 -12.014 15.088 hybrid contribution 0.677 -0.880 0.056 1.112 sum -8.100 1.624 -11.958 14.534 Atomic orbital electron populations 1.21628 0.95193 1.00978 1.01972 1.21789 0.97381 0.96350 0.98834 1.22966 0.92758 0.98669 1.05698 1.20908 0.93901 0.95133 0.84230 0.91105 1.21528 0.96286 1.00317 0.94449 0.90535 1.21831 1.01475 0.99960 0.96977 1.21518 0.95013 1.00304 0.97807 1.21904 1.01004 0.99484 0.95002 1.21329 0.79172 1.00867 0.98114 1.58126 1.18579 1.73152 1.34431 1.02488 0.73322 0.73529 0.71427 1.93553 1.86840 1.30577 1.86505 1.93606 1.43139 1.76009 1.84212 1.57801 1.67219 1.22923 1.35129 1.21170 1.00562 0.82253 0.99795 1.19163 0.90102 0.90525 0.87811 0.92393 1.22184 0.97976 1.01027 0.99227 1.21181 0.89004 0.95703 1.50072 0.89859 1.24924 0.95207 0.98011 0.94197 1.69880 0.98911 1.35799 1.47779 0.87238 0.78965 0.86753 0.79282 1.19471 1.20837 1.18118 0.91369 0.93241 0.93590 0.93033 0.95496 0.84449 0.91314 0.92752 0.92286 0.92615 0.91880 0.92237 0.90973 0.91661 0.91118 0.89182 0.93822 0.90387 0.92888 0.95512 0.92734 0.92798 0.92347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.77 37.16 0.36 -1.55 16 2 C -0.11 -1.62 4.44 -26.73 -0.12 -1.74 16 3 C -0.16 -2.24 4.16 -26.73 -0.11 -2.35 16 4 C 0.16 2.30 2.66 -67.82 -0.18 2.12 16 5 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 6 C -0.11 -1.31 2.13 -90.72 -0.19 -1.50 16 7 H 0.08 1.03 6.15 -51.93 -0.32 0.71 16 8 C -0.14 -1.40 8.97 37.16 0.33 -1.07 16 9 C -0.11 -1.34 5.17 -26.69 -0.14 -1.48 16 10 C -0.13 -2.02 6.08 -26.62 -0.16 -2.18 16 11 C 0.13 2.30 6.53 -3.72 -0.02 2.27 16 12 N -1.00 -17.11 3.25 -106.71 -0.35 -17.45 16 13 S 2.78 54.53 3.72 -107.50 -0.40 54.13 16 14 O -0.99 -22.92 15.67 -57.17 -0.90 -23.82 16 15 O -0.99 -18.14 9.63 -57.17 -0.55 -18.70 16 16 N -0.99 -20.05 3.09 -115.86 -0.36 -20.40 16 17 C 0.11 1.87 9.52 59.85 0.57 2.44 16 18 C 0.23 5.24 1.88 -69.08 -0.13 5.11 16 19 H 0.06 1.44 4.03 -51.93 -0.21 1.23 16 20 C -0.14 -3.04 8.98 37.16 0.33 -2.71 16 21 C -0.52 -13.16 8.44 -34.44 -0.29 -13.45 16 22 H 0.08 2.24 6.78 -52.49 -0.36 1.89 16 23 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 24 N -0.89 -24.87 13.96 55.43 0.77 -24.09 16 25 Si 0.85 20.54 26.69 -169.99 -4.54 16.00 16 26 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 28 H -0.26 -6.11 6.22 56.52 0.35 -5.75 16 29 H 0.07 0.99 7.56 -51.93 -0.39 0.60 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.72 6.31 -51.93 -0.33 0.39 16 33 H 0.03 0.49 3.31 -23.74 -0.08 0.41 16 34 H 0.14 2.10 5.32 -55.71 -0.30 1.80 16 35 H 0.07 0.78 6.56 -51.93 -0.34 0.44 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.54 6.58 -51.93 -0.34 0.20 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 44 H 0.09 1.87 7.26 -51.93 -0.38 1.49 16 45 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.08 1.39 6.54 -51.92 -0.34 1.05 16 47 H 0.05 0.80 7.82 -51.93 -0.41 0.39 16 48 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.05 1.15 7.36 -51.93 -0.38 0.77 16 50 H 0.05 1.06 7.85 -51.93 -0.41 0.66 16 51 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 376.07 15.07 5.67 5.67 Total: -1.00 -28.89 376.07 -9.33 -38.22 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -8.83 Total: 4.49 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 0.15 Total: -14.04 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.07 Total: -61.95 kcal Atomic # 8 Polarization: -41.07 SS G_CDS: -1.45 Total: -42.51 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.54 Total: 16.00 kcal Atomic # 16 Polarization: 54.53 SS G_CDS: -0.40 Total: 54.13 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.89 -9.33 -38.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337972777.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.710 kcal (2) G-P(sol) polarization free energy of solvation -28.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds