Wall clock time and date at job start Tue Mar 31 2020 17:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47043 * 2 1 4 4 C 1.52993 * 109.47413 * 180.37753 * 3 2 1 5 5 H 1.09004 * 109.70489 * 180.84147 * 4 3 2 6 6 C 1.52768 * 109.50682 * 60.72659 * 4 3 2 7 7 H 1.09004 * 109.35784 * 305.61231 * 6 4 3 8 8 C 1.52995 * 109.59192 * 65.65391 * 6 4 3 9 9 C 1.53044 * 109.38230 * 185.70662 * 6 4 3 10 10 C 1.53039 * 109.53597 * 61.23636 * 9 6 4 11 11 C 1.53185 * 109.31872 * 298.63561 * 10 9 6 12 12 N 1.46923 * 109.58989 * 301.19995 * 4 3 2 13 13 S 1.65601 * 120.62705 * 353.41862 * 12 4 3 14 14 O 1.42101 * 106.40596 * 119.79065 * 13 12 4 15 15 O 1.42096 * 106.40335 * 346.86508 * 13 12 4 16 16 N 1.65601 * 107.21776 * 233.32911 * 13 12 4 17 17 C 1.46497 * 120.00139 * 83.35773 * 16 13 12 18 18 C 1.46505 * 119.99991 * 263.36026 * 16 13 12 19 19 H 1.08995 * 109.47248 * 359.97438 * 18 16 13 20 20 C 1.52995 * 109.47198 * 239.99687 * 18 16 13 21 21 C 1.50701 * 109.47210 * 119.99772 * 18 16 13 22 22 H 1.08001 * 119.99852 * 32.88083 * 21 18 16 23 23 C 1.37873 * 120.00090 * 212.88578 * 21 18 16 24 24 N 1.31513 * 119.99886 * 181.91055 * 23 21 18 25 25 Si 1.86797 * 119.99802 * 1.90240 * 23 21 18 26 26 H 1.48504 * 109.47101 * 91.46349 * 25 23 21 27 27 H 1.48507 * 109.46981 * 211.45794 * 25 23 21 28 28 H 1.48496 * 109.47583 * 331.46193 * 25 23 21 29 29 H 1.08994 * 109.47382 * 299.99249 * 1 2 3 30 30 H 1.08996 * 109.47085 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.46418 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47223 * 240.00596 * 2 1 3 33 33 H 1.08992 * 109.47649 * 120.00275 * 2 1 3 34 34 H 1.09001 * 109.46709 * 60.37649 * 3 2 1 35 35 H 1.09006 * 109.47117 * 300.38027 * 3 2 1 36 36 H 1.09004 * 109.47234 * 179.97438 * 8 6 4 37 37 H 1.08996 * 109.47366 * 299.98464 * 8 6 4 38 38 H 1.09000 * 109.47058 * 59.98246 * 8 6 4 39 39 H 1.09000 * 109.45797 * 301.21699 * 9 6 4 40 40 H 1.08994 * 109.46184 * 181.26275 * 9 6 4 41 41 H 1.09003 * 109.49383 * 178.68301 * 10 9 6 42 42 H 1.09001 * 109.52716 * 58.60723 * 10 9 6 43 43 H 1.09005 * 109.58446 * 294.85070 * 11 10 9 44 44 H 1.08998 * 109.59293 * 174.42376 * 11 10 9 45 45 H 1.08995 * 109.47547 * 94.26819 * 17 16 13 46 46 H 1.09007 * 109.47336 * 214.27139 * 17 16 13 47 47 H 1.08999 * 109.47404 * 334.26649 * 17 16 13 48 48 H 1.09000 * 109.46863 * 54.74300 * 20 18 16 49 49 H 1.08994 * 109.47412 * 174.74211 * 20 18 16 50 50 H 1.09004 * 109.47320 * 294.74439 * 20 18 16 51 51 H 0.97008 * 119.99585 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0095 5 1 3.9375 2.4687 0.0055 6 6 4.0722 0.7413 -1.2703 7 1 3.6281 -0.2522 -1.3324 8 6 3.6757 1.5560 -2.5031 9 6 5.5963 0.6165 -1.2090 10 6 5.9924 -0.2266 0.0052 11 6 5.5125 0.4686 1.2831 12 7 4.0699 0.7230 1.1698 13 16 3.0264 0.2025 2.3456 14 8 3.1628 -1.2107 2.4063 15 8 1.7877 0.8539 2.0999 16 7 3.5843 0.7885 3.7905 17 6 3.2498 2.1530 4.2058 18 6 4.4123 -0.0576 4.6535 19 1 4.5529 -1.0302 4.1820 20 6 3.7183 -0.2420 6.0045 21 6 5.7529 0.5981 4.8629 22 1 5.8282 1.6750 4.8949 23 6 6.8834 -0.1767 5.0135 24 7 8.0474 0.3943 5.2338 25 14 6.7614 -2.0375 4.9050 26 1 6.9929 -2.4678 3.5026 27 1 7.7855 -2.6530 5.7870 28 1 5.4091 -2.4712 5.3389 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.6821 1.9544 0.8934 35 1 1.6711 1.9584 -0.8866 36 1 4.0354 1.0542 -3.4014 37 1 2.5902 1.6447 -2.5463 38 1 4.1192 2.5497 -2.4399 39 1 6.0387 1.6089 -1.1220 40 1 5.9582 0.1364 -2.1181 41 1 7.0766 -0.3346 0.0351 42 1 5.5306 -1.2112 -0.0686 43 1 6.0417 1.4136 1.4057 44 1 5.7038 -0.1739 2.1426 45 1 2.3638 2.1329 4.8402 46 1 4.0853 2.5787 4.7618 47 1 3.0518 2.7628 3.3243 48 1 2.7120 -0.6297 5.8460 49 1 4.2871 -0.9456 6.6122 50 1 3.6611 0.7180 6.5177 51 1 8.8427 -0.1509 5.3401 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337972777.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:47 Heat of formation + Delta-G solvation = -62.807980 kcal Electronic energy + Delta-G solvation = -30888.753117 eV Core-core repulsion = 27143.590259 eV Total energy + Delta-G solvation = -3745.162857 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.62401 -38.66149 -37.97278 -37.38402 -35.18272 -34.49251 -34.33790 -32.43835 -31.68041 -28.57025 -27.36184 -26.99163 -26.89503 -24.73217 -23.34451 -22.46005 -22.29624 -20.68802 -19.75245 -19.26358 -18.52838 -17.96287 -17.22241 -16.75289 -16.60091 -15.93795 -15.71525 -15.47507 -15.08795 -14.96386 -14.83467 -14.65668 -14.51150 -14.20169 -14.11083 -13.64625 -13.52648 -13.47257 -13.38692 -13.32800 -13.10750 -12.94659 -12.88421 -12.62085 -12.57347 -12.51374 -12.38372 -12.20194 -12.11483 -11.83198 -11.76764 -11.66555 -11.61543 -11.36095 -11.20607 -10.98258 -10.76503 -10.55788 -9.84009 -9.68850 -8.32132 -6.33651 -0.28785 1.25338 1.32939 1.41945 1.96339 2.28083 2.52729 3.05309 3.48091 3.57611 3.80971 3.81856 3.96559 4.02501 4.10211 4.12738 4.25150 4.35884 4.41567 4.46717 4.60499 4.68252 4.70055 4.70507 4.72058 4.81675 4.84127 4.88677 4.88996 4.92437 4.95335 4.99404 5.08390 5.09359 5.10874 5.16530 5.20901 5.27511 5.30238 5.32694 5.37616 5.44282 5.50037 5.51628 5.56587 5.75214 5.81415 6.01354 6.33941 6.71938 7.31111 8.82671 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014365 B = 0.006048 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.781801 B = 4628.769412 C = 5599.449627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.114 4.114 3 C -0.157 4.157 4 C 0.156 3.844 5 H 0.088 0.912 6 C -0.104 4.104 7 H 0.063 0.937 8 C -0.139 4.139 9 C -0.103 4.103 10 C -0.134 4.134 11 C 0.131 3.869 12 N -1.000 6.000 13 S 2.785 3.215 14 O -1.032 7.032 15 O -0.975 6.975 16 N -0.999 5.999 17 C 0.104 3.896 18 C 0.229 3.771 19 H 0.039 0.961 20 C -0.144 4.144 21 C -0.505 4.505 22 H 0.062 0.938 23 C 0.043 3.957 24 N -0.925 5.925 25 Si 0.887 3.113 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.253 1.253 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.046 0.954 32 H 0.063 0.937 33 H -0.008 1.008 34 H 0.124 0.876 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.041 0.959 49 H 0.050 0.950 50 H 0.064 0.936 51 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.519 4.144 -14.287 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.152 4.152 3 C -0.196 4.196 4 C 0.051 3.949 5 H 0.106 0.894 6 C -0.124 4.124 7 H 0.082 0.918 8 C -0.196 4.196 9 C -0.141 4.141 10 C -0.174 4.174 11 C 0.005 3.995 12 N -0.841 5.841 13 S 2.800 3.200 14 O -1.015 7.015 15 O -0.959 6.959 16 N -0.839 5.839 17 C -0.041 4.041 18 C 0.124 3.876 19 H 0.057 0.943 20 C -0.204 4.204 21 C -0.544 4.544 22 H 0.081 0.919 23 C -0.157 4.157 24 N -0.565 5.565 25 Si 0.712 3.288 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.177 1.177 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.011 0.989 34 H 0.141 0.859 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.060 0.940 49 H 0.069 0.931 50 H 0.083 0.917 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.115 3.566 -14.309 17.883 hybrid contribution 1.001 -1.133 0.699 1.666 sum -9.113 2.433 -13.611 16.560 Atomic orbital electron populations 1.21639 0.94052 1.01348 1.02690 1.21890 0.98531 0.97092 0.97712 1.22900 0.92427 0.97741 1.06549 1.21277 0.94235 0.95844 0.83593 0.89367 1.21530 0.96036 1.00042 0.94817 0.91825 1.21798 1.02146 1.00031 0.95671 1.21514 0.95227 1.00387 0.96961 1.21910 1.01262 0.99078 0.95100 1.21248 0.79696 1.00411 0.98128 1.57963 1.17833 1.73421 1.34916 1.02228 0.73647 0.72786 0.71376 1.93495 1.87529 1.33428 1.87072 1.93660 1.42941 1.75448 1.83892 1.57710 1.66835 1.23823 1.35504 1.21341 1.00753 0.80971 1.01063 1.18973 0.89706 0.89871 0.89026 0.94307 1.22145 0.98502 1.01721 0.98058 1.21246 0.90106 0.94672 1.48413 0.91943 1.25373 0.95129 1.00684 0.94524 1.69957 0.99542 1.36888 1.50105 0.86663 0.79159 0.83800 0.79211 1.19617 1.20111 1.17747 0.92734 0.90365 0.93521 0.91856 0.98932 0.85869 0.87906 0.91558 0.91447 0.91521 0.90800 0.90228 0.90312 0.93074 0.90891 0.93106 0.92185 0.91425 0.90640 0.94023 0.93114 0.91657 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 9.77 71.98 0.70 -2.82 16 2 C -0.11 -3.31 4.44 30.60 0.14 -3.17 16 3 C -0.16 -3.91 4.16 30.59 0.13 -3.78 16 4 C 0.16 3.98 2.66 44.83 0.12 4.10 16 5 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 6 C -0.10 -2.27 2.13 -10.86 -0.02 -2.29 16 7 H 0.06 1.57 6.15 -2.39 -0.01 1.55 16 8 C -0.14 -2.08 8.97 71.98 0.65 -1.43 16 9 C -0.10 -2.28 5.17 30.62 0.16 -2.12 16 10 C -0.13 -3.95 6.08 30.67 0.19 -3.77 16 11 C 0.13 4.66 6.53 86.36 0.56 5.22 16 12 N -1.00 -33.55 3.25 -491.53 -1.60 -35.14 16 13 S 2.78 109.41 3.72 -56.49 -0.21 109.20 16 14 O -1.03 -48.96 15.67 -128.00 -2.01 -50.97 16 15 O -0.98 -35.07 9.63 -128.00 -1.23 -36.30 16 16 N -1.00 -40.48 3.09 -520.45 -1.61 -42.09 16 17 C 0.10 3.49 9.52 127.77 1.22 4.71 16 18 C 0.23 10.68 1.88 44.24 0.08 10.77 16 19 H 0.04 1.98 4.03 -2.39 -0.01 1.97 16 20 C -0.14 -6.05 8.98 71.98 0.65 -5.41 16 21 C -0.50 -26.13 8.44 25.60 0.22 -25.92 16 22 H 0.06 3.46 6.78 -2.91 -0.02 3.44 16 23 C 0.04 2.35 5.47 84.65 0.46 2.82 16 24 N -0.93 -53.18 13.96 21.45 0.30 -52.88 16 25 Si 0.89 42.98 26.69 68.60 1.83 44.81 16 26 H -0.27 -13.05 7.11 99.48 0.71 -12.34 16 27 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 28 H -0.25 -12.03 6.22 99.48 0.62 -11.42 16 29 H 0.05 1.50 7.56 -2.39 -0.02 1.49 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.06 1.65 6.31 -2.39 -0.02 1.64 16 33 H -0.01 -0.28 3.31 -20.32 -0.07 -0.34 16 34 H 0.12 3.47 5.32 -62.23 -0.33 3.14 16 35 H 0.10 1.88 6.56 -2.38 -0.02 1.86 16 36 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 0.91 6.58 -2.39 -0.02 0.90 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 44 H 0.05 2.20 7.26 -2.39 -0.02 2.18 16 45 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.07 2.40 6.54 -2.38 -0.02 2.39 16 47 H 0.07 2.16 7.82 -2.39 -0.02 2.14 16 48 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.05 2.12 7.36 -2.39 -0.02 2.11 16 50 H 0.06 2.54 7.85 -2.39 -0.02 2.52 16 51 H 0.27 14.59 8.31 -92.70 -0.77 13.82 16 Total: -1.00 -64.04 376.07 1.15 -62.89 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 0.43 Total: 23.60 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: 5.24 Total: -23.10 kcal Atomic # 7 Polarization: -127.22 SS G_CDS: -2.91 Total: -130.12 kcal Atomic # 8 Polarization: -84.03 SS G_CDS: -3.24 Total: -87.27 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.83 Total: 44.81 kcal Atomic # 16 Polarization: 109.41 SS G_CDS: -0.21 Total: 109.20 kcal Total: -64.04 1.15 -62.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337972777.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.079 kcal (2) G-P(sol) polarization free energy of solvation -64.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds