Wall clock time and date at job start Tue Mar 31 2020 17:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47106 * 2 1 4 4 C 1.52997 * 109.46759 * 179.97438 * 3 2 1 5 5 H 1.09001 * 109.47298 * 55.00660 * 4 3 2 6 6 C 1.52996 * 109.47326 * 294.99973 * 4 3 2 7 7 C 1.53001 * 109.47136 * 180.02562 * 6 4 3 8 8 C 1.53001 * 109.47471 * 60.00260 * 7 6 4 9 9 C 1.53004 * 109.46618 * 300.00191 * 8 7 6 10 10 C 1.53001 * 109.47356 * 59.99738 * 9 8 7 11 11 H 1.08996 * 109.47197 * 179.97438 * 10 9 8 12 12 N 1.46501 * 109.46821 * 60.00053 * 10 9 8 13 13 S 1.65595 * 120.00204 * 95.00189 * 12 10 9 14 14 O 1.42108 * 106.40299 * 178.53742 * 13 12 10 15 15 O 1.42095 * 106.40098 * 311.45283 * 13 12 10 16 16 N 1.65600 * 107.21822 * 64.99573 * 13 12 10 17 17 C 1.46498 * 119.99875 * 269.99785 * 16 13 12 18 18 C 1.46501 * 119.99965 * 90.00322 * 16 13 12 19 19 H 1.09006 * 109.47225 * 359.97438 * 18 16 13 20 20 C 1.52995 * 109.47078 * 240.00033 * 18 16 13 21 21 C 1.50704 * 109.47133 * 119.99901 * 18 16 13 22 22 H 1.07997 * 119.99943 * 35.00455 * 21 18 16 23 23 C 1.37883 * 119.99619 * 215.00082 * 21 18 16 24 24 N 1.31508 * 119.99824 * 184.86727 * 23 21 18 25 25 Si 1.86802 * 120.00270 * 4.86653 * 23 21 18 26 26 H 1.48498 * 109.46847 * 84.74022 * 25 23 21 27 27 H 1.48497 * 109.47057 * 204.73856 * 25 23 21 28 28 H 1.48502 * 109.47162 * 324.74423 * 25 23 21 29 29 H 1.08999 * 109.47355 * 299.99792 * 1 2 3 30 30 H 1.09002 * 109.47002 * 59.99831 * 1 2 3 31 31 H 1.09004 * 109.47172 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46654 * 239.99984 * 2 1 3 33 33 H 1.09002 * 109.47002 * 120.00169 * 2 1 3 34 34 H 1.08999 * 109.46864 * 60.00452 * 3 2 1 35 35 H 1.08997 * 109.46854 * 300.00016 * 3 2 1 36 36 H 1.09003 * 109.47494 * 60.00419 * 6 4 3 37 37 H 1.09001 * 109.47493 * 300.00568 * 6 4 3 38 38 H 1.09009 * 109.47171 * 180.02562 * 7 6 4 39 39 H 1.09004 * 109.47347 * 299.99734 * 7 6 4 40 40 H 1.09001 * 109.46761 * 59.99427 * 8 7 6 41 41 H 1.08993 * 109.47334 * 179.97438 * 8 7 6 42 42 H 1.09004 * 109.46665 * 179.97438 * 9 8 7 43 43 H 1.08992 * 109.46852 * 299.99267 * 9 8 7 44 44 H 0.97003 * 119.99836 * 274.99385 * 12 10 9 45 45 H 1.09004 * 109.46926 * 90.00487 * 17 16 13 46 46 H 1.08999 * 109.46836 * 210.00049 * 17 16 13 47 47 H 1.08996 * 109.47632 * 330.00106 * 17 16 13 48 48 H 1.09003 * 109.47354 * 55.34710 * 20 18 16 49 49 H 1.09004 * 109.47629 * 175.34980 * 20 18 16 50 50 H 1.09003 * 109.47035 * 295.34699 * 20 18 16 51 51 H 0.96995 * 120.00141 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8410 6 6 4.0794 0.8330 1.3083 7 6 5.6094 0.8335 1.3091 8 6 6.1191 2.2707 1.1838 9 6 5.6096 2.8801 -0.1239 10 6 4.0796 2.8796 -0.1248 11 1 3.7166 3.3142 -1.0561 12 7 3.5904 3.6717 1.0064 13 16 3.1961 5.2657 0.7921 14 8 2.7298 5.7363 2.0493 15 8 4.2838 5.8579 0.0955 16 7 1.8992 5.3159 -0.2364 17 6 2.1144 5.3999 -1.6830 18 6 0.5366 5.2764 0.3005 19 1 0.5763 5.2141 1.3880 20 6 -0.1945 4.0519 -0.2535 21 6 -0.1996 6.5272 -0.1051 22 1 -0.0089 6.9778 -1.0679 23 6 -1.1166 7.0963 0.7530 24 7 -1.8284 8.1309 0.3628 25 14 -1.3480 6.3975 2.4699 26 1 -0.3345 6.9834 3.3835 27 1 -2.7091 6.7315 2.9610 28 1 -1.1843 4.9221 2.4301 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.7161 -0.1908 1.3979 37 1 3.7157 1.4225 2.1499 38 1 5.9724 0.3989 2.2406 39 1 5.9735 0.2441 0.4675 40 1 5.7550 2.8599 2.0254 41 1 7.2090 2.2710 1.1848 42 1 5.9723 3.9042 -0.2130 43 1 5.9736 2.2909 -0.9654 44 1 3.4973 3.2624 1.8809 45 1 2.1744 4.3947 -2.1004 46 1 1.2840 5.9354 -2.1433 47 1 3.0446 5.9320 -1.8818 48 1 0.3813 3.1535 -0.0312 49 1 -1.1787 3.9763 0.2087 50 1 -0.3070 4.1535 -1.3330 51 1 -2.4732 8.5315 0.9666 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554663998.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:04 Heat of formation + Delta-G solvation = -109.091967 kcal Electronic energy + Delta-G solvation = -30126.775093 eV Core-core repulsion = 26379.605212 eV Total energy + Delta-G solvation = -3747.169881 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.65547 -36.68040 -36.28936 -35.23345 -34.99617 -33.48698 -32.43646 -30.86460 -29.93471 -29.38188 -25.98857 -25.65017 -25.12526 -22.99581 -22.11751 -20.83729 -20.42129 -19.84767 -18.51005 -17.44794 -17.31885 -16.45712 -15.87752 -15.36293 -15.30238 -15.05675 -14.43817 -14.27055 -14.11004 -13.60529 -13.39385 -13.16234 -13.08147 -12.94152 -12.59254 -12.47843 -12.40103 -12.22208 -11.96765 -11.92128 -11.77614 -11.48304 -11.44243 -11.32610 -11.19672 -11.12727 -11.10117 -10.96175 -10.79288 -10.67655 -10.64439 -10.57162 -10.41939 -10.19361 -9.93731 -9.77087 -9.32820 -9.20179 -8.58616 -8.03564 -6.15683 -4.15809 1.19587 3.29340 3.36035 3.45261 3.50808 4.10634 4.38862 4.47054 4.57140 4.65846 4.90999 4.97168 5.01240 5.14180 5.16105 5.18134 5.21911 5.28261 5.40398 5.42218 5.50788 5.58528 5.64961 5.69742 5.75403 5.83464 5.84429 5.93065 6.00415 6.01259 6.02826 6.07260 6.14612 6.17603 6.19745 6.25189 6.31029 6.35669 6.37438 6.48012 6.51017 6.60805 6.66659 6.95556 7.17052 7.24494 7.54358 7.69564 8.44875 8.88848 9.46266 10.96337 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.013059 B = 0.005362 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.675980 B = 5221.076984 C = 6254.923429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.121 4.121 4 C -0.089 4.089 5 H 0.079 0.921 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.118 4.118 9 C -0.137 4.137 10 C 0.164 3.836 11 H 0.083 0.917 12 N -1.125 6.125 13 S 2.770 3.230 14 O -0.981 6.981 15 O -0.993 6.993 16 N -0.982 5.982 17 C 0.094 3.906 18 C 0.237 3.763 19 H 0.054 0.946 20 C -0.154 4.154 21 C -0.516 4.516 22 H 0.082 0.918 23 C 0.079 3.921 24 N -0.890 5.890 25 Si 0.866 3.134 26 H -0.265 1.265 27 H -0.287 1.287 28 H -0.264 1.264 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.409 0.591 45 H 0.036 0.964 46 H 0.084 0.916 47 H 0.065 0.935 48 H 0.037 0.963 49 H 0.050 0.950 50 H 0.050 0.950 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.399 -18.243 -1.371 21.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.109 4.109 5 H 0.097 0.903 6 C -0.153 4.153 7 C -0.156 4.156 8 C -0.155 4.155 9 C -0.177 4.177 10 C 0.056 3.944 11 H 0.101 0.899 12 N -0.884 5.884 13 S 2.779 3.221 14 O -0.965 6.965 15 O -0.976 6.976 16 N -0.824 5.824 17 C -0.052 4.052 18 C 0.133 3.867 19 H 0.072 0.928 20 C -0.213 4.213 21 C -0.556 4.556 22 H 0.100 0.900 23 C -0.126 4.126 24 N -0.527 5.527 25 Si 0.693 3.307 26 H -0.190 1.190 27 H -0.213 1.213 28 H -0.189 1.189 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.243 0.757 45 H 0.054 0.946 46 H 0.103 0.897 47 H 0.083 0.917 48 H 0.056 0.944 49 H 0.069 0.931 50 H 0.070 0.930 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.745 -17.264 -1.100 20.909 hybrid contribution -0.528 -0.699 1.124 1.426 sum 11.217 -17.963 0.025 21.178 Atomic orbital electron populations 1.21787 0.95895 1.01114 1.02377 1.21554 0.95871 0.97015 1.01481 1.21826 0.94050 0.96631 1.03325 1.21419 0.95795 0.95147 0.98519 0.90307 1.21620 0.95305 1.00796 0.97594 1.21550 0.95733 0.96936 1.01411 1.21472 0.99865 0.95849 0.98336 1.22054 0.95449 1.02307 0.97857 1.20676 0.93412 0.91738 0.88533 0.89878 1.56343 1.82197 1.32096 1.17797 1.02320 0.73273 0.73035 0.73443 1.93600 1.81503 1.78606 1.42765 1.93524 1.53671 1.75335 1.75075 1.57859 1.20390 1.87964 1.16227 1.21355 1.02896 0.99942 0.81009 1.19060 0.77903 0.95530 0.94166 0.92791 1.22392 0.99999 0.97434 1.01494 1.21149 1.21147 1.08691 1.04636 0.90039 1.24980 0.95140 0.94354 0.98082 1.69882 1.23979 1.22382 1.36428 0.87026 0.77622 0.80334 0.85758 1.19033 1.21324 1.18865 0.92593 0.92491 0.93258 0.92445 0.92196 0.91157 0.91057 0.91647 0.91923 0.92345 0.92136 0.91830 0.92279 0.90411 0.91324 0.75733 0.94558 0.89742 0.91656 0.94406 0.93062 0.93039 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.91 37.16 0.37 -1.16 16 2 C -0.12 -1.11 5.69 -26.73 -0.15 -1.26 16 3 C -0.12 -1.26 3.29 -26.73 -0.09 -1.35 16 4 C -0.09 -0.83 2.01 -90.62 -0.18 -1.01 16 5 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 6 C -0.12 -1.00 4.77 -26.73 -0.13 -1.12 16 7 C -0.12 -0.97 5.92 -26.73 -0.16 -1.13 16 8 C -0.12 -1.13 5.77 -26.73 -0.15 -1.29 16 9 C -0.14 -1.47 5.64 -26.73 -0.15 -1.62 16 10 C 0.16 1.86 2.45 -67.93 -0.17 1.70 16 11 H 0.08 0.96 6.61 -51.93 -0.34 0.62 16 12 N -1.13 -15.42 4.13 -4.89 -0.02 -15.44 16 13 S 2.77 52.59 6.05 -107.50 -0.65 51.94 16 14 O -0.98 -22.60 16.70 -57.17 -0.95 -23.56 16 15 O -0.99 -20.11 16.00 -57.17 -0.91 -21.03 16 16 N -0.98 -19.18 3.12 -115.85 -0.36 -19.54 16 17 C 0.09 1.58 9.22 59.85 0.55 2.13 16 18 C 0.24 5.31 2.28 -69.08 -0.16 5.16 16 19 H 0.05 1.30 4.07 -51.93 -0.21 1.09 16 20 C -0.15 -2.91 9.10 37.16 0.34 -2.58 16 21 C -0.52 -13.91 8.72 -34.44 -0.30 -14.21 16 22 H 0.08 2.34 6.82 -52.49 -0.36 1.98 16 23 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 24 N -0.89 -26.62 13.96 55.43 0.77 -25.84 16 25 Si 0.87 21.74 26.99 -169.99 -4.59 17.15 16 26 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 28 H -0.26 -6.15 6.83 56.52 0.39 -5.76 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 34 H 0.07 0.84 6.96 -51.93 -0.36 0.48 16 35 H 0.07 0.80 7.24 -51.93 -0.38 0.43 16 36 H 0.06 0.51 6.56 -51.93 -0.34 0.17 16 37 H 0.06 0.58 6.50 -51.93 -0.34 0.24 16 38 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.67 7.45 -51.93 -0.39 0.29 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.08 0.99 7.64 -51.93 -0.40 0.59 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.41 5.04 6.81 -34.47 -0.23 4.80 16 45 H 0.04 0.49 7.41 -51.93 -0.38 0.10 16 46 H 0.08 1.53 6.56 -51.93 -0.34 1.19 16 47 H 0.06 1.06 7.02 -51.93 -0.36 0.70 16 48 H 0.04 0.59 4.81 -51.93 -0.25 0.34 16 49 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.05 0.94 7.83 -51.93 -0.41 0.53 16 51 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 384.81 15.07 5.80 5.80 Total: -1.00 -32.34 384.81 -10.20 -42.55 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -8.81 Total: 3.57 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -0.48 Total: -15.61 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: 0.39 Total: -60.82 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -1.87 Total: -44.58 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.59 Total: 17.15 kcal Atomic # 16 Polarization: 52.59 SS G_CDS: -0.65 Total: 51.94 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.34 -10.20 -42.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554663998.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.546 kcal (2) G-P(sol) polarization free energy of solvation -32.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds