Wall clock time and date at job start Tue Mar 31 2020 17:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47188 * 2 1 4 4 C 1.53003 * 109.47561 * 120.00377 * 2 1 3 5 5 H 1.08997 * 109.48662 * 299.94862 * 4 2 1 6 6 C 1.52779 * 109.56511 * 180.02562 * 4 2 1 7 7 N 1.47086 * 108.76282 * 186.36998 * 6 4 2 8 8 C 1.34774 * 120.87729 * 231.12068 * 7 6 4 9 9 O 1.21279 * 120.00493 * 359.71940 * 8 7 6 10 10 C 1.50706 * 119.99637 * 179.72286 * 8 7 6 11 11 C 1.50702 * 109.47088 * 179.97438 * 10 8 7 12 12 C 1.38311 * 119.92915 * 89.99653 * 11 10 8 13 13 C 1.38096 * 120.06782 * 180.02562 * 12 11 10 14 14 C 1.38883 * 119.93001 * 359.97438 * 13 12 11 15 15 O 1.35752 * 120.06733 * 179.72546 * 14 13 12 16 16 C 1.34835 * 116.99867 * 174.45565 * 15 14 13 17 17 H 1.08001 * 119.99908 * 5.03572 * 16 15 14 18 18 C 1.38654 * 119.99862 * 185.04415 * 16 15 14 19 19 N 1.31554 * 119.99970 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99933 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46970 * 90.00112 * 20 18 16 22 22 H 1.48501 * 109.47408 * 209.99838 * 20 18 16 23 23 H 1.48495 * 109.47507 * 330.00260 * 20 18 16 24 24 C 1.38878 * 119.86281 * 0.02562 * 14 13 12 25 25 C 1.38100 * 119.93217 * 359.97321 * 24 14 13 26 26 C 1.47077 * 118.23419 * 50.85079 * 7 6 4 27 27 C 1.53235 * 108.52372 * 309.08570 * 26 7 6 28 28 N 1.46891 * 109.49116 * 59.99999 * 4 2 1 29 29 H 1.09000 * 109.46779 * 299.99387 * 1 2 3 30 30 H 1.09000 * 109.47325 * 59.99851 * 1 2 3 31 31 H 1.09004 * 109.46748 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47219 * 240.00643 * 2 1 3 33 33 H 1.09003 * 109.47434 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47109 * 300.00282 * 3 2 1 35 35 H 1.08998 * 109.47172 * 60.00262 * 3 2 1 36 36 H 1.08999 * 109.55853 * 66.55526 * 6 4 2 37 37 H 1.09005 * 109.46082 * 306.12034 * 6 4 2 38 38 H 1.08992 * 109.47282 * 60.00082 * 10 8 7 39 39 H 1.08999 * 109.46898 * 299.99462 * 10 8 7 40 40 H 1.08001 * 119.96634 * 0.02562 * 12 11 10 41 41 H 1.07991 * 120.03444 * 180.02562 * 13 12 11 42 42 H 0.97002 * 120.00599 * 179.97438 * 19 18 16 43 43 H 1.08007 * 120.03391 * 179.97438 * 24 14 13 44 44 H 1.08001 * 119.96661 * 180.02562 * 25 24 14 45 45 H 1.08997 * 109.63187 * 68.80384 * 26 7 6 46 46 H 1.09004 * 109.62081 * 189.18162 * 26 7 6 47 47 H 1.09002 * 109.49277 * 173.79671 * 27 26 7 48 48 H 1.09003 * 109.49423 * 293.87658 * 27 26 7 49 49 H 1.00904 * 111.00465 * 307.21397 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6777 -0.2072 2.1394 6 6 3.5679 -0.7220 1.2516 7 7 4.0389 -1.5483 2.3735 8 6 4.9477 -1.0736 3.2483 9 8 5.3920 0.0467 3.1132 10 6 5.4118 -1.9352 4.3944 11 6 6.4206 -1.1759 5.2172 12 6 5.9986 -0.3948 6.2777 13 6 6.9205 0.3026 7.0332 14 6 8.2727 0.2185 6.7275 15 8 9.1809 0.9072 7.4649 16 6 10.4830 0.6922 7.1889 17 1 10.7618 0.0608 6.3582 18 6 11.4641 1.2816 7.9716 19 7 11.1244 2.0509 8.9832 20 14 13.2680 0.9831 7.5898 21 1 13.7514 2.0193 6.6422 22 1 14.0581 1.0534 8.8452 23 1 13.4289 -0.3605 6.9782 24 6 8.6932 -0.5668 5.6620 25 6 7.7664 -1.2618 4.9103 26 6 3.4873 -2.9039 2.5188 27 6 1.9583 -2.8152 2.4699 28 7 1.5508 -2.1063 1.2496 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.9330 0.2982 1.3696 37 1 3.9324 -1.1380 0.3123 38 1 5.8715 -2.8429 4.0037 39 1 4.5585 -2.1998 5.0188 40 1 4.9470 -0.3301 6.5152 41 1 6.5905 0.9120 7.8614 42 1 11.8107 2.4630 9.5311 43 1 9.7440 -0.6339 5.4216 44 1 8.0928 -1.8729 4.0818 45 1 3.8439 -3.5337 1.7038 46 1 3.8022 -3.3269 3.4729 47 1 1.5356 -3.8199 2.4655 48 1 1.5973 -2.2722 3.3435 49 1 0.5491 -2.1361 1.1315 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856486345.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:15 Heat of formation + Delta-G solvation = -38.509266 kcal Electronic energy + Delta-G solvation = -28203.918356 eV Core-core repulsion = 24324.365219 eV Total energy + Delta-G solvation = -3879.553137 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.43463 -39.04337 -38.25801 -36.43198 -35.67597 -33.47174 -32.45344 -31.54915 -30.25309 -30.08440 -28.12024 -26.97022 -25.92509 -25.05418 -23.90909 -22.07308 -21.91918 -20.68378 -20.15518 -18.95374 -17.93040 -17.54359 -16.92871 -16.16058 -16.03833 -15.62039 -15.40092 -14.75631 -14.56766 -14.44794 -14.28504 -14.15062 -13.83155 -13.54976 -13.46859 -13.38085 -13.13476 -12.88319 -12.65440 -12.50798 -12.42458 -12.20566 -11.86653 -11.81302 -11.67984 -11.46453 -11.23921 -11.17731 -10.95221 -10.94853 -10.78388 -10.67724 -10.57695 -10.39281 -9.62880 -9.27641 -9.12733 -8.77650 -8.57486 -8.09615 -7.10975 -6.40294 -3.98751 2.29501 2.31050 2.76470 2.94035 3.16587 3.16637 3.21568 3.68288 4.00882 4.35605 4.40303 4.52109 4.60875 4.71285 4.80001 4.86454 4.92130 5.04234 5.08012 5.15602 5.19585 5.26325 5.30641 5.32048 5.34082 5.37187 5.46904 5.50078 5.53284 5.59173 5.69209 5.73291 5.75200 5.78458 5.89675 5.94850 5.99144 6.26656 6.36406 6.47062 6.58823 6.75414 6.89041 6.96925 7.10559 7.28971 7.37665 7.42566 7.50196 7.89343 8.05128 8.30520 9.05439 9.76536 10.77898 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.023920 B = 0.002111 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.271327 B =13258.084555 C =13600.471677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.152 4.152 4 C 0.079 3.921 5 H 0.043 0.957 6 C 0.120 3.880 7 N -0.624 5.624 8 C 0.512 3.488 9 O -0.520 6.520 10 C -0.078 4.078 11 C -0.170 4.170 12 C -0.060 4.060 13 C -0.191 4.191 14 C 0.157 3.843 15 O -0.179 6.179 16 C -0.390 4.390 17 H 0.092 0.908 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.941 3.059 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.268 1.268 24 C -0.232 4.232 25 C -0.056 4.056 26 C 0.111 3.889 27 C 0.042 3.958 28 N -0.685 5.685 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.269 0.731 43 H 0.126 0.874 44 H 0.103 0.897 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.036 0.964 49 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.024 -10.641 -16.306 28.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 C -0.210 4.210 4 C -0.031 4.031 5 H 0.061 0.939 6 C -0.003 4.003 7 N -0.360 5.360 8 C 0.301 3.699 9 O -0.394 6.394 10 C -0.118 4.118 11 C -0.171 4.171 12 C -0.078 4.078 13 C -0.211 4.211 14 C 0.103 3.897 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.109 0.891 18 C -0.166 4.166 19 N -0.499 5.499 20 Si 0.766 3.234 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 C -0.251 4.251 25 C -0.074 4.074 26 C -0.013 4.013 27 C -0.088 4.088 28 N -0.319 5.319 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.079 0.921 43 H 0.144 0.856 44 H 0.122 0.878 45 H 0.093 0.907 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.054 0.946 49 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -20.120 -9.952 -16.346 27.768 hybrid contribution 0.200 0.149 0.363 0.440 sum -19.920 -9.803 -15.984 27.356 Atomic orbital electron populations 1.21861 0.95143 1.01646 1.02023 1.21114 0.95774 0.96118 0.97770 1.21908 1.01753 0.95315 1.02043 1.21830 0.95355 0.88432 0.97494 0.93917 1.21627 0.92258 0.97171 0.89264 1.48258 1.43419 1.15597 1.28750 1.21086 0.78089 0.87922 0.82846 1.90731 1.55105 1.19938 1.73623 1.20428 0.99051 0.97901 0.94386 1.18645 0.93005 1.05545 0.99911 1.20379 0.97557 0.95428 0.94431 1.20144 0.90671 1.06404 1.03860 1.19384 0.90173 0.89846 0.90298 1.83978 1.15651 1.55667 1.52906 1.21327 0.78492 1.31738 1.15100 0.89097 1.25286 1.00016 0.96092 0.95207 1.70041 1.34179 1.29155 1.16512 0.85712 0.80567 0.79036 0.78109 1.19905 1.20293 1.19218 1.21103 1.00204 1.04192 0.99611 1.20502 0.92222 0.97525 0.97194 1.21819 0.92708 0.83854 1.02892 1.22311 0.95979 0.99304 0.91186 1.60358 1.18420 1.14979 1.38121 0.92876 0.92225 0.92409 0.90084 0.91949 0.92286 0.92550 0.88575 0.91285 0.89042 0.89162 0.87528 0.86576 0.92084 0.85584 0.87848 0.90740 0.89142 0.89468 0.94577 0.83618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.87 37.16 0.33 -0.50 16 2 C -0.09 -0.61 2.69 -90.62 -0.24 -0.86 16 3 C -0.15 -1.13 8.84 37.16 0.33 -0.80 16 4 C 0.08 0.66 2.21 -67.83 -0.15 0.51 16 5 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 6 C 0.12 1.28 5.30 -3.84 -0.02 1.26 16 7 N -0.62 -7.06 3.02 -172.74 -0.52 -7.59 16 8 C 0.51 7.55 7.70 -10.98 -0.08 7.47 16 9 O -0.52 -10.15 15.49 5.56 0.09 -10.07 16 10 C -0.08 -1.02 4.19 -29.03 -0.12 -1.15 16 11 C -0.17 -3.05 4.38 -104.57 -0.46 -3.51 16 12 C -0.06 -1.14 9.69 -39.61 -0.38 -1.52 16 13 C -0.19 -4.28 9.99 -39.39 -0.39 -4.68 16 14 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 15 O -0.18 -5.28 9.76 0.03 0.00 -5.28 16 16 C -0.39 -11.23 9.49 30.89 0.29 -10.93 16 17 H 0.09 2.43 5.21 -52.49 -0.27 2.15 16 18 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 19 N -0.86 -25.86 13.67 55.48 0.76 -25.11 16 20 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 21 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 C -0.23 -5.32 9.17 -39.39 -0.36 -5.68 16 25 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 26 C 0.11 0.86 6.51 -3.61 -0.02 0.84 16 27 C 0.04 0.28 6.70 -3.70 -0.02 0.25 16 28 N -0.69 -4.82 6.48 -106.72 -0.69 -5.52 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.28 6.50 -51.93 -0.34 -0.06 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.52 6.59 -51.93 -0.34 0.17 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.10 1.22 5.73 -51.93 -0.30 0.92 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.99 7.94 -51.93 -0.41 0.58 16 39 H 0.09 0.96 7.61 -51.93 -0.40 0.56 16 40 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.12 2.50 8.06 -52.49 -0.42 2.07 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.13 2.88 5.64 -52.48 -0.30 2.58 16 44 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.09 0.57 6.02 -51.93 -0.31 0.26 16 47 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 49 H 0.34 1.94 6.73 -39.29 -0.26 1.67 16 LS Contribution 388.71 15.07 5.86 5.86 Total: -1.00 -34.48 388.71 -9.15 -43.63 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -7.56 Total: 4.16 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: -2.05 Total: -16.09 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: -0.45 Total: -38.21 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: 0.09 Total: -15.34 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.48 -9.15 -43.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856486345.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.119 kcal (2) G-P(sol) polarization free energy of solvation -34.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds