Wall clock time and date at job start Tue Mar 31 2020 17:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47159 * 2 1 4 4 C 1.53004 * 109.46977 * 240.00336 * 2 1 3 5 5 H 1.08998 * 109.49186 * 305.04772 * 4 2 1 6 6 C 1.53243 * 109.49267 * 184.99592 * 4 2 1 7 7 N 1.47077 * 108.51982 * 186.20756 * 6 4 2 8 8 C 1.34778 * 120.88135 * 231.16515 * 7 6 4 9 9 O 1.21284 * 119.99847 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99885 * 180.02562 * 8 7 6 11 11 C 1.50700 * 109.46985 * 179.97438 * 10 8 7 12 12 C 1.38323 * 119.97022 * 269.72644 * 11 10 8 13 13 C 1.38280 * 120.14186 * 179.77051 * 12 11 10 14 14 C 1.38121 * 120.06588 * 0.50235 * 13 12 11 15 15 C 1.38861 * 119.93313 * 359.74925 * 14 13 12 16 16 O 1.35747 * 120.07191 * 179.97438 * 15 14 13 17 17 C 1.34831 * 116.99760 * 354.49178 * 16 15 14 18 18 H 1.07998 * 120.00242 * 5.05518 * 17 16 15 19 19 C 1.38656 * 120.00125 * 185.05456 * 17 16 15 20 20 N 1.31550 * 120.00523 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99665 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47126 * 89.99982 * 21 19 17 23 23 H 1.48499 * 109.47163 * 209.99497 * 21 19 17 24 24 H 1.48500 * 109.47353 * 329.99766 * 21 19 17 25 25 C 1.38079 * 119.96205 * 89.99968 * 11 10 8 26 26 C 1.47076 * 118.23604 * 51.18627 * 7 6 4 27 27 C 1.53240 * 108.52456 * 308.81439 * 26 7 6 28 28 N 1.46894 * 109.49277 * 65.13026 * 4 2 1 29 29 H 1.08996 * 109.47496 * 59.99444 * 1 2 3 30 30 H 1.09001 * 109.47094 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47000 * 299.99504 * 1 2 3 32 32 H 1.08996 * 109.47683 * 119.99793 * 2 1 3 33 33 H 1.09006 * 109.47106 * 300.00148 * 3 2 1 34 34 H 1.09000 * 109.47003 * 59.99892 * 3 2 1 35 35 H 1.08998 * 109.47670 * 180.02562 * 3 2 1 36 36 H 1.08995 * 109.62711 * 305.92100 * 6 4 2 37 37 H 1.09005 * 109.62438 * 66.30755 * 6 4 2 38 38 H 1.08996 * 109.46859 * 299.99577 * 10 8 7 39 39 H 1.08999 * 109.46922 * 60.00063 * 10 8 7 40 40 H 1.07995 * 119.92770 * 359.97438 * 12 11 10 41 41 H 1.07999 * 119.96576 * 180.25944 * 13 12 11 42 42 H 1.08004 * 120.03621 * 179.72939 * 14 13 12 43 43 H 0.97005 * 120.00507 * 180.02562 * 20 19 17 44 44 H 1.07998 * 120.04112 * 359.97438 * 25 11 10 45 45 H 1.09005 * 109.62918 * 68.52692 * 26 7 6 46 46 H 1.08998 * 109.62614 * 188.90412 * 26 7 6 47 47 H 1.09002 * 109.49357 * 173.79285 * 27 26 7 48 48 H 1.09005 * 109.48898 * 293.84453 * 27 26 7 49 49 H 1.00894 * 111.00402 * 307.21180 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 1 1.6048 -1.7195 -1.2961 6 6 3.5672 -0.8314 -1.1885 7 7 4.0462 -1.3906 -2.4617 8 6 4.8813 -2.4483 -2.4820 9 8 5.2473 -2.9521 -1.4412 10 6 5.3604 -3.0050 -3.7979 11 6 6.2763 -4.1746 -3.5450 12 6 7.6372 -3.9692 -3.4064 13 6 8.4803 -5.0393 -3.1695 14 6 7.9668 -6.3185 -3.0808 15 6 6.6018 -6.5287 -3.2246 16 8 6.0942 -7.7847 -3.1385 17 6 6.9788 -8.7960 -3.0263 18 1 8.0328 -8.5829 -2.9260 19 6 6.5353 -10.1097 -3.0395 20 7 7.3984 -11.0965 -2.9305 21 14 4.7123 -10.4783 -3.2136 22 1 4.3689 -10.6091 -4.6524 23 1 4.3948 -11.7478 -2.5116 24 1 3.9240 -9.3712 -2.6151 25 6 5.7569 -5.4510 -3.4574 26 6 3.5902 -0.7647 -3.7121 27 6 2.0621 -0.6571 -3.6735 28 7 1.6542 0.0388 -2.4458 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4426 -0.0005 36 1 3.9998 0.1575 -1.0370 37 1 3.8545 -1.4867 -0.3662 38 1 4.5040 -3.3343 -4.3864 39 1 5.9011 -2.2320 -4.3441 40 1 8.0416 -2.9706 -3.4801 41 1 9.5419 -4.8752 -3.0575 42 1 8.6264 -7.1545 -2.9001 43 1 7.0882 -12.0156 -2.9402 44 1 4.6948 -5.6113 -3.5696 45 1 4.0252 0.2306 -3.8032 46 1 3.8958 -1.3769 -4.5606 47 1 1.7149 -0.0969 -4.5417 48 1 1.6267 -1.6563 -3.6875 49 1 0.6633 0.2284 -2.4499 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000856488614.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:24 Heat of formation + Delta-G solvation = -35.133179 kcal Electronic energy + Delta-G solvation = -28471.872956 eV Core-core repulsion = 24592.466217 eV Total energy + Delta-G solvation = -3879.406739 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.48668 -39.19339 -38.35951 -36.58392 -35.64170 -33.34637 -32.43581 -32.17777 -30.40375 -29.38858 -27.91881 -27.37741 -26.27965 -25.12546 -23.95881 -22.48565 -21.71008 -20.77935 -19.65432 -19.05207 -17.67649 -17.45396 -17.07457 -16.07855 -16.00191 -15.73819 -15.63087 -15.14159 -14.90408 -14.56697 -14.23594 -14.04656 -13.77317 -13.62485 -13.60379 -13.41689 -13.12292 -12.79438 -12.59703 -12.38960 -12.37190 -12.26301 -12.09580 -11.86200 -11.67492 -11.50532 -11.27659 -11.14996 -11.08942 -10.89857 -10.80269 -10.76562 -10.67472 -10.12696 -9.71532 -9.34707 -9.10962 -8.83233 -8.57295 -8.09920 -7.31104 -6.37031 -4.03555 2.04813 2.33342 2.69810 2.89143 3.24526 3.27396 3.43467 3.72441 4.27457 4.32724 4.41574 4.46758 4.58890 4.69210 4.74966 4.79000 4.86874 4.92796 4.99652 5.09289 5.12471 5.15618 5.25276 5.33674 5.36398 5.38859 5.44024 5.52589 5.55798 5.59584 5.61393 5.71965 5.72579 5.78911 5.88620 5.97519 6.10176 6.16166 6.29152 6.32905 6.57390 6.58169 6.83200 6.90243 7.14460 7.25734 7.31053 7.36710 7.65369 7.85601 8.08960 8.23253 8.98618 9.62033 10.70882 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015297 B = 0.002572 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.955601 B =10885.241886 C =11812.973147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.139 4.139 4 C 0.078 3.922 5 H 0.044 0.956 6 C 0.120 3.880 7 N -0.622 5.622 8 C 0.516 3.484 9 O -0.519 6.519 10 C -0.092 4.092 11 C -0.035 4.035 12 C -0.188 4.188 13 C -0.076 4.076 14 C -0.217 4.217 15 C 0.161 3.839 16 O -0.220 6.220 17 C -0.388 4.388 18 H 0.106 0.894 19 C 0.063 3.937 20 N -0.882 5.882 21 Si 0.904 3.096 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.175 4.175 26 C 0.111 3.889 27 C 0.041 3.959 28 N -0.680 5.680 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.133 0.867 43 H 0.279 0.721 44 H 0.112 0.888 45 H 0.075 0.925 46 H 0.090 0.910 47 H 0.087 0.913 48 H 0.037 0.963 49 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.574 26.027 -0.919 28.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.197 4.197 4 C -0.032 4.032 5 H 0.062 0.938 6 C -0.003 4.003 7 N -0.358 5.358 8 C 0.304 3.696 9 O -0.393 6.393 10 C -0.132 4.132 11 C -0.035 4.035 12 C -0.206 4.206 13 C -0.094 4.094 14 C -0.237 4.237 15 C 0.109 3.891 16 O -0.125 6.125 17 C -0.463 4.463 18 H 0.124 0.876 19 C -0.140 4.140 20 N -0.520 5.520 21 Si 0.730 3.270 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.184 1.184 25 C -0.194 4.194 26 C -0.012 4.012 27 C -0.089 4.089 28 N -0.314 5.314 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.150 0.850 43 H 0.089 0.911 44 H 0.130 0.870 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.105 0.895 48 H 0.055 0.945 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.998 25.783 -0.325 28.440 hybrid contribution -1.295 -1.058 -0.121 1.677 sum -13.293 24.725 -0.446 28.075 Atomic orbital electron populations 1.21857 0.95129 1.01670 1.02004 1.21140 0.95777 0.97324 0.96799 1.21765 1.01066 0.95091 1.01741 1.21894 0.95659 0.95192 0.90481 0.93829 1.21729 0.92246 0.99431 0.86886 1.48201 1.48332 1.32151 1.07132 1.20783 0.77990 0.78873 0.91928 1.90752 1.55703 1.58324 1.34513 1.20612 0.99997 0.97490 0.95077 1.18665 0.93188 0.91896 0.99799 1.20415 0.92774 0.97936 1.09524 1.20736 0.98589 0.92336 0.97724 1.21296 0.95466 0.97799 1.09103 1.19004 0.91706 0.85336 0.93067 1.83567 1.36380 1.11779 1.80786 1.20766 0.90736 0.83571 1.51276 0.87647 1.24448 0.99815 0.93888 0.95860 1.69645 1.34541 0.99536 1.48282 0.86195 0.83933 0.78061 0.78795 1.19927 1.20816 1.18418 1.19924 0.98664 0.90585 1.10234 1.21830 0.93857 0.98977 0.86580 1.22315 0.95786 0.97521 0.93247 1.60369 1.22055 1.47773 1.01187 0.92523 0.92850 0.92250 0.90528 0.91447 0.93366 0.92622 0.90776 0.88901 0.88441 0.88321 0.87739 0.87152 0.84980 0.91131 0.86976 0.90660 0.89186 0.89452 0.94517 0.83689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.97 37.15 0.33 -0.54 16 2 C -0.09 -0.64 2.75 -90.62 -0.25 -0.89 16 3 C -0.14 -0.91 8.75 37.16 0.32 -0.59 16 4 C 0.08 0.66 2.33 -67.59 -0.16 0.50 16 5 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 6 C 0.12 1.26 5.75 -3.60 -0.02 1.24 16 7 N -0.62 -6.92 3.01 -172.46 -0.52 -7.43 16 8 C 0.52 7.56 7.70 -10.98 -0.08 7.48 16 9 O -0.52 -10.11 15.49 5.55 0.09 -10.02 16 10 C -0.09 -1.20 4.19 -29.03 -0.12 -1.32 16 11 C -0.03 -0.62 4.37 -104.65 -0.46 -1.08 16 12 C -0.19 -3.35 9.70 -39.53 -0.38 -3.73 16 13 C -0.08 -1.46 10.04 -39.61 -0.40 -1.85 16 14 C -0.22 -4.95 9.17 -39.39 -0.36 -5.31 16 15 C 0.16 3.91 6.65 -39.10 -0.26 3.65 16 16 O -0.22 -6.03 8.59 0.06 0.00 -6.03 16 17 C -0.39 -11.26 9.95 30.89 0.31 -10.95 16 18 H 0.11 3.12 5.44 -52.49 -0.29 2.83 16 19 C 0.06 1.80 5.49 -17.52 -0.10 1.71 16 20 N -0.88 -25.99 13.96 55.48 0.77 -25.22 16 21 Si 0.90 22.22 28.62 -169.99 -4.86 17.35 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.26 -6.46 7.11 56.52 0.40 -6.06 16 25 C -0.17 -3.68 9.65 -39.39 -0.38 -4.06 16 26 C 0.11 0.84 6.50 -3.60 -0.02 0.81 16 27 C 0.04 0.27 6.70 -3.70 -0.02 0.25 16 28 N -0.68 -4.64 5.50 -106.46 -0.59 -5.22 16 29 H 0.06 0.29 6.61 -51.93 -0.34 -0.06 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.45 7.47 -51.93 -0.39 0.06 16 34 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.05 0.40 6.45 -51.93 -0.33 0.06 16 36 H 0.07 0.73 6.33 -51.93 -0.33 0.40 16 37 H 0.09 1.18 7.07 -51.93 -0.37 0.81 16 38 H 0.10 1.07 7.61 -51.93 -0.40 0.67 16 39 H 0.10 1.00 7.94 -51.93 -0.41 0.58 16 40 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 41 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 42 H 0.13 3.12 5.64 -52.48 -0.30 2.83 16 43 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.11 2.23 8.06 -52.49 -0.42 1.80 16 45 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.09 0.55 6.02 -51.93 -0.31 0.24 16 47 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.34 1.93 6.97 -39.29 -0.27 1.66 16 LS Contribution 386.30 15.07 5.82 5.82 Total: -1.00 -33.62 386.30 -8.86 -42.48 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.52 Total: 2.98 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -2.05 Total: -14.70 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.33 Total: -37.88 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: 0.09 Total: -16.05 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.86 Total: 17.35 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.62 -8.86 -42.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000856488614.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.343 kcal (2) G-P(sol) polarization free energy of solvation -33.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds