Wall clock time and date at job start Tue Mar 31 2020 17:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53000 * 109.47570 * 2 1 4 4 O 1.42902 * 109.47342 * 239.99574 * 2 1 3 5 5 C 1.53007 * 109.47103 * 119.99784 * 2 1 3 6 6 N 1.46897 * 109.47390 * 184.99474 * 5 2 1 7 7 C 1.48534 * 111.00371 * 307.40186 * 6 5 2 8 8 C 1.54927 * 103.22737 * 200.27644 * 7 6 5 9 9 C 1.54603 * 102.92468 * 37.41019 * 8 7 6 10 10 H 1.08997 * 110.31098 * 219.12458 * 9 8 7 11 11 N 1.46506 * 110.30584 * 96.95574 * 9 8 7 12 12 C 1.34782 * 119.99458 * 89.28988 * 11 9 8 13 13 O 1.21541 * 120.00185 * 359.97438 * 12 11 9 14 14 C 1.47883 * 119.99491 * 179.97438 * 12 11 9 15 15 C 1.39925 * 120.02853 * 359.72349 * 14 12 11 16 16 C 1.38323 * 120.35940 * 179.74289 * 15 14 12 17 17 C 1.37747 * 120.41425 * 0.55388 * 16 15 14 18 18 C 1.40752 * 120.03897 * 359.70399 * 17 16 15 19 19 C 1.41439 * 120.18301 * 180.02562 * 18 17 16 20 20 H 1.07998 * 119.99308 * 24.43242 * 19 18 17 21 21 C 1.39937 * 120.00199 * 204.43919 * 19 18 17 22 22 N 1.30828 * 119.99827 * 17.87570 * 21 19 18 23 23 Si 1.86800 * 119.99828 * 197.87818 * 21 19 18 24 24 H 1.48494 * 109.47324 * 59.99892 * 23 21 19 25 25 H 1.48500 * 109.47104 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47025 * 299.99941 * 23 21 19 27 27 C 1.38992 * 120.02462 * 180.02562 * 14 12 11 28 28 C 1.47901 * 111.00134 * 189.99883 * 6 5 2 29 29 H 1.09007 * 109.47237 * 300.00279 * 1 2 3 30 30 H 1.09006 * 109.47133 * 59.99597 * 1 2 3 31 31 H 1.08993 * 109.47873 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47339 * 180.02562 * 3 2 1 33 33 H 1.08997 * 109.47209 * 299.99779 * 3 2 1 34 34 H 1.09000 * 109.47283 * 59.99913 * 3 2 1 35 35 H 0.96696 * 114.00101 * 300.00489 * 4 2 1 36 36 H 1.09006 * 109.46751 * 65.00062 * 5 2 1 37 37 H 1.09001 * 109.47182 * 304.99957 * 5 2 1 38 38 H 1.09000 * 110.66422 * 318.71301 * 7 6 5 39 39 H 1.09004 * 110.67070 * 81.83765 * 7 6 5 40 40 H 1.09001 * 110.72780 * 279.05788 * 8 7 6 41 41 H 1.09003 * 110.72652 * 155.76937 * 8 7 6 42 42 H 0.96992 * 119.99839 * 269.28856 * 11 9 8 43 43 H 1.08004 * 119.81900 * 0.02562 * 15 14 12 44 44 H 1.08004 * 119.79354 * 180.27830 * 16 15 14 45 45 H 1.08002 * 119.98665 * 179.72243 * 17 16 15 46 46 H 0.97000 * 119.99638 * 179.97438 * 22 21 19 47 47 H 1.08005 * 120.20297 * 359.95065 * 27 14 12 48 48 H 1.08998 * 109.91329 * 26.49900 * 28 6 5 49 49 H 1.09002 * 109.91895 * 265.20003 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7212 1.2493 6 7 3.5040 -0.6177 1.3112 7 6 4.1240 -1.0725 0.0404 8 6 5.5821 -1.3952 0.4529 9 6 5.4148 -2.0111 1.8611 10 1 6.2146 -1.6724 2.5196 11 7 5.4076 -3.4738 1.7787 12 6 6.5655 -4.1589 1.8584 13 8 7.6157 -3.5632 1.9982 14 6 6.5582 -5.6354 1.7758 15 6 5.3489 -6.3220 1.6206 16 6 5.3346 -7.7027 1.5373 17 6 6.5088 -8.4183 1.6174 18 6 7.7345 -7.7454 1.7788 19 6 8.9421 -8.4772 1.8609 20 1 9.0070 -9.4625 1.4236 21 6 10.0525 -7.9245 2.5087 22 7 9.8971 -6.9163 3.3278 23 14 11.7566 -8.6263 2.2038 24 1 12.0887 -8.5107 0.7611 25 1 12.7536 -7.8705 3.0039 26 1 11.7822 -10.0559 2.6047 27 6 7.7519 -6.3425 1.8585 28 6 4.0535 -1.4975 2.3655 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0275 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.7210 -1.5953 -1.2328 36 1 1.7515 -1.7715 1.2056 37 1 1.6053 -0.2617 2.1370 38 1 3.6234 -1.9655 -0.3339 39 1 4.1020 -0.2772 -0.7047 40 1 6.1804 -0.4852 0.4987 41 1 6.0265 -2.1163 -0.2331 42 1 4.5695 -3.9491 1.6667 43 1 4.4221 -5.7707 1.5611 44 1 4.3964 -8.2231 1.4130 45 1 6.4892 -9.4964 1.5559 46 1 10.6668 -6.5335 3.7772 47 1 8.6873 -5.8169 1.9824 48 1 3.3800 -2.3373 2.5366 49 1 4.1884 -0.9323 3.2877 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869782419.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:10 Heat of formation + Delta-G solvation = -85.237260 kcal Electronic energy + Delta-G solvation = -28637.414674 eV Core-core repulsion = 24755.835259 eV Total energy + Delta-G solvation = -3881.579415 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.36077 -40.33405 -38.93635 -38.11195 -35.68086 -35.14264 -33.55926 -32.21146 -31.32533 -31.06444 -29.47325 -28.11479 -27.22721 -26.26669 -24.43243 -22.84147 -22.45912 -21.73293 -21.27841 -20.92114 -19.53342 -18.11375 -17.71514 -17.50687 -16.89610 -16.69793 -16.44499 -16.04377 -15.93695 -15.70189 -15.24278 -15.11009 -14.97024 -14.72016 -14.39287 -14.26912 -13.85715 -13.50832 -13.38761 -13.25394 -13.04344 -12.98760 -12.84303 -12.82598 -12.77282 -12.56497 -12.53350 -12.37185 -12.28681 -12.21202 -11.94117 -11.79825 -11.52703 -11.47526 -11.07581 -10.79698 -10.64728 -10.13186 -9.48915 -9.39935 -9.38089 -8.67850 -6.39280 0.36955 1.00242 1.35319 1.46949 1.49821 2.08595 2.16918 2.18548 2.77428 3.00769 3.38637 3.51448 3.65738 3.70801 3.94284 4.01586 4.05748 4.09574 4.19059 4.31562 4.39008 4.44804 4.55485 4.57988 4.67501 4.71927 4.80690 4.86047 4.90005 4.97625 5.02097 5.04445 5.07539 5.09897 5.10369 5.18228 5.25218 5.29895 5.30570 5.45444 5.49647 5.52241 5.84752 5.87955 5.91513 6.04270 6.06656 6.27599 6.49172 6.66744 6.86623 6.87780 6.93588 7.30256 8.28681 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.023835 B = 0.002380 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.475858 B =11760.342627 C =12395.779268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.128 3.872 3 C -0.131 4.131 4 O -0.571 6.571 5 C 0.020 3.980 6 N -0.513 5.513 7 C 0.064 3.936 8 C -0.139 4.139 9 C 0.131 3.869 10 H 0.072 0.928 11 N -0.704 5.704 12 C 0.562 3.438 13 O -0.587 6.587 14 C -0.138 4.138 15 C -0.197 4.197 16 C -0.095 4.095 17 C -0.218 4.218 18 C 0.066 3.934 19 C -0.497 4.497 20 H 0.084 0.916 21 C 0.029 3.971 22 N -0.825 5.825 23 Si 0.982 3.018 24 H -0.261 1.261 25 H -0.272 1.272 26 H -0.251 1.251 27 C -0.132 4.132 28 C 0.041 3.959 29 H 0.075 0.925 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.383 0.617 36 H 0.047 0.953 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.410 0.590 43 H 0.135 0.865 44 H 0.139 0.861 45 H 0.108 0.892 46 H 0.287 0.713 47 H 0.098 0.902 48 H 0.065 0.935 49 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.140 12.401 -4.329 23.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.087 3.913 3 C -0.188 4.188 4 O -0.379 6.379 5 C -0.108 4.108 6 N -0.237 5.237 7 C -0.063 4.063 8 C -0.178 4.178 9 C 0.026 3.974 10 H 0.090 0.910 11 N -0.358 5.358 12 C 0.352 3.648 13 O -0.468 6.468 14 C -0.142 4.142 15 C -0.216 4.216 16 C -0.113 4.113 17 C -0.237 4.237 18 C 0.064 3.936 19 C -0.526 4.526 20 H 0.103 0.897 21 C -0.186 4.186 22 N -0.450 5.450 23 Si 0.803 3.197 24 H -0.185 1.185 25 H -0.197 1.197 26 H -0.175 1.175 27 C -0.153 4.153 28 C -0.088 4.088 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.232 0.768 36 H 0.065 0.935 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.248 0.752 43 H 0.153 0.847 44 H 0.157 0.843 45 H 0.126 0.874 46 H 0.097 0.903 47 H 0.116 0.884 48 H 0.084 0.916 49 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -17.930 14.132 -4.043 23.185 hybrid contribution 0.469 -1.884 0.086 1.943 sum -17.461 12.248 -3.956 21.692 Atomic orbital electron populations 1.22398 0.94161 1.03103 1.03273 1.21268 0.93165 0.93199 0.83645 1.21670 1.02031 0.93188 1.01935 1.86652 1.76873 1.29856 1.44556 1.23090 0.87832 0.99780 1.00082 1.64869 1.05808 1.49316 1.03729 1.23175 0.91186 0.99799 0.92136 1.22980 0.98750 1.00490 0.95618 1.21790 0.98943 0.79021 0.97639 0.91002 1.45866 1.08704 1.06798 1.74397 1.18741 0.83544 0.87913 0.74595 1.90674 1.33164 1.71542 1.51456 1.19781 0.95640 0.91368 1.07371 1.20811 0.95278 0.94566 1.10990 1.20919 0.97581 0.93857 0.98943 1.21407 0.92423 0.98814 1.11094 1.17961 0.93879 0.91773 0.90005 1.19843 0.96110 1.03575 1.33115 0.89745 1.26867 1.05388 0.94361 0.92007 1.69886 1.34341 1.21271 1.19521 0.85245 0.75484 0.79502 0.79496 1.18515 1.19697 1.17525 1.21455 0.96537 0.94404 1.02876 1.23103 0.93027 0.96065 0.96578 0.90591 0.91910 0.91543 0.92345 0.92903 0.90472 0.76777 0.93454 0.88787 0.93045 0.89096 0.90570 0.92598 0.75233 0.84719 0.84312 0.87352 0.90298 0.88391 0.91645 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 8.81 71.98 0.63 -0.88 16 2 C 0.13 1.59 0.98 -10.79 -0.01 1.58 16 3 C -0.13 -1.87 8.51 71.98 0.61 -1.25 16 4 O -0.57 -8.31 9.48 -148.98 -1.41 -9.72 16 5 C 0.02 0.26 4.35 86.31 0.38 0.64 16 6 N -0.51 -9.07 4.55 -883.02 -4.02 -13.10 16 7 C 0.06 1.29 4.45 86.65 0.39 1.67 16 8 C -0.14 -3.63 6.78 31.80 0.22 -3.41 16 9 C 0.13 3.59 3.34 45.87 0.15 3.75 16 10 H 0.07 2.36 7.56 -2.39 -0.02 2.34 16 11 N -0.70 -21.91 5.01 -441.18 -2.21 -24.12 16 12 C 0.56 24.65 7.77 86.80 0.67 25.33 16 13 O -0.59 -30.79 15.98 -3.85 -0.06 -30.85 16 14 C -0.14 -6.52 5.87 -20.13 -0.12 -6.64 16 15 C -0.20 -7.58 9.55 22.70 0.22 -7.36 16 16 C -0.10 -3.70 10.01 22.17 0.22 -3.48 16 17 C -0.22 -10.11 9.78 22.77 0.22 -9.89 16 18 C 0.07 3.61 5.57 -21.32 -0.12 3.49 16 19 C -0.50 -27.20 9.05 23.47 0.21 -26.98 16 20 H 0.08 4.34 7.91 -2.91 -0.02 4.31 16 21 C 0.03 1.52 5.14 85.25 0.44 1.96 16 22 N -0.82 -46.44 10.95 21.82 0.24 -46.20 16 23 Si 0.98 39.93 29.60 68.60 2.03 41.96 16 24 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 25 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 26 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 27 C -0.13 -7.38 8.24 23.01 0.19 -7.19 16 28 C 0.04 0.79 6.47 86.45 0.56 1.35 16 29 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.06 1.05 6.40 -2.39 -0.02 1.03 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.38 3.48 8.68 -74.06 -0.64 2.83 16 36 H 0.05 0.54 7.81 -2.38 -0.02 0.52 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 0.97 6.96 -2.39 -0.02 0.95 16 39 H 0.09 1.94 6.10 -2.39 -0.01 1.92 16 40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.06 1.69 8.05 -2.39 -0.02 1.67 16 42 H 0.41 10.23 6.35 -92.71 -0.59 9.64 16 43 H 0.14 3.85 6.38 -2.91 -0.02 3.83 16 44 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 45 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 46 H 0.29 14.92 8.30 -92.71 -0.77 14.15 16 47 H 0.10 6.12 5.74 -2.91 -0.02 6.10 16 48 H 0.07 1.10 7.05 -2.39 -0.02 1.08 16 49 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -69.93 386.11 -0.83 -70.76 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: -0.26 Total: 38.61 kcal Atomic # 6 Polarization: -32.21 SS G_CDS: 4.86 Total: -27.34 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -5.99 Total: -83.41 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -1.47 Total: -40.57 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -69.93 -0.83 -70.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869782419.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.473 kcal (2) G-P(sol) polarization free energy of solvation -69.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds