Wall clock time and date at job start Tue Mar 31 2020 17:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47048 * 2 1 4 4 N 1.46507 * 109.46840 * 119.99729 * 2 1 3 5 5 C 1.34771 * 120.00100 * 85.00052 * 4 2 1 6 6 O 1.21282 * 120.00029 * 355.20688 * 5 4 2 7 7 C 1.50699 * 120.00206 * 175.20231 * 5 4 2 8 8 H 1.08999 * 109.47050 * 39.85423 * 7 5 4 9 9 N 1.46502 * 109.47186 * 159.85536 * 7 5 4 10 10 C 1.34770 * 119.99776 * 204.99962 * 9 7 5 11 11 O 1.21548 * 120.00556 * 0.02562 * 10 9 7 12 12 C 1.47890 * 119.99805 * 180.02562 * 10 9 7 13 13 C 1.39918 * 120.02330 * 359.72640 * 12 10 9 14 14 C 1.38329 * 120.35450 * 179.71780 * 13 12 10 15 15 C 1.37754 * 120.41530 * 0.55923 * 14 13 12 16 16 C 1.40753 * 120.03769 * 359.72562 * 15 14 13 17 17 C 1.41437 * 120.17784 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99761 * 324.86852 * 17 16 15 19 19 C 1.39927 * 120.00077 * 144.87220 * 17 16 15 20 20 N 1.30826 * 120.00317 * 358.94027 * 19 17 16 21 21 Si 1.86807 * 120.00148 * 178.94185 * 19 17 16 22 22 H 1.48498 * 109.46764 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47058 * 119.99847 * 21 19 17 24 24 H 1.48504 * 109.46891 * 240.00037 * 21 19 17 25 25 C 1.38995 * 120.02709 * 180.02562 * 12 10 9 26 26 C 1.53000 * 109.47348 * 279.85711 * 7 5 4 27 27 C 1.53003 * 109.46952 * 63.93171 * 26 7 5 28 28 C 1.52998 * 109.47215 * 183.93282 * 26 7 5 29 29 H 1.08996 * 109.47062 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46915 * 300.00239 * 1 2 3 31 31 H 1.09003 * 109.46801 * 60.00486 * 1 2 3 32 32 H 1.09000 * 109.47638 * 239.99908 * 2 1 3 33 33 H 1.09003 * 109.47231 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.46922 * 299.99439 * 3 2 1 35 35 H 1.08998 * 109.47458 * 60.00094 * 3 2 1 36 36 H 0.96996 * 119.99825 * 264.99747 * 4 2 1 37 37 H 0.96997 * 119.99973 * 25.00085 * 9 7 5 38 38 H 1.07997 * 119.82040 * 359.97438 * 13 12 10 39 39 H 1.08006 * 119.79280 * 180.25989 * 14 13 12 40 40 H 1.07999 * 119.97969 * 179.74156 * 15 14 13 41 41 H 0.97003 * 120.00697 * 180.02562 * 20 19 17 42 42 H 1.08005 * 120.20050 * 359.97438 * 25 12 10 43 43 H 1.09000 * 109.47136 * 303.93840 * 26 7 5 44 44 H 1.09000 * 109.46817 * 173.83284 * 27 26 7 45 45 H 1.09001 * 109.47229 * 293.82909 * 27 26 7 46 46 H 1.08993 * 109.47380 * 53.83390 * 27 26 7 47 47 H 1.08995 * 109.47097 * 299.99747 * 28 26 7 48 48 H 1.09000 * 109.47085 * 59.99943 * 28 26 7 49 49 H 1.09007 * 109.46761 * 179.97438 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -2.0321 1.1946 6 8 1.7774 -2.6756 0.2353 7 6 2.7503 -2.7328 2.3846 8 1 2.3929 -2.2644 3.3016 9 7 2.3569 -4.1440 2.3716 10 6 2.3255 -4.8453 3.5220 11 8 2.6230 -4.3070 4.5704 12 6 1.9289 -6.2700 3.5088 13 6 1.5809 -6.8887 2.3031 14 6 1.2145 -8.2224 2.2820 15 6 1.1770 -8.9539 3.4487 16 6 1.5181 -8.3470 4.6720 17 6 1.4811 -9.0954 5.8716 18 1 0.7269 -9.8558 6.0106 19 6 2.4216 -8.8504 6.8783 20 7 3.3479 -7.9436 6.7016 21 14 2.3546 -9.8183 8.4746 22 1 1.2209 -10.7762 8.4255 23 1 3.6260 -10.5641 8.6550 24 1 2.1633 -8.8836 9.6126 25 6 1.8958 -6.9938 4.6950 26 6 4.2753 -2.6278 2.3193 27 6 4.6906 -1.1595 2.4316 28 6 4.8911 -3.4218 3.4731 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 2.2490 -0.1823 1.9895 37 1 2.1192 -4.5735 1.5350 38 1 1.6023 -6.3229 1.3834 39 1 0.9516 -8.6920 1.3455 40 1 0.8860 -9.9936 3.4246 41 1 4.0001 -7.7740 7.3993 42 1 2.1594 -6.5191 5.6286 43 1 4.6271 -3.0332 1.3706 44 1 5.7767 -1.0931 2.4953 45 1 4.3443 -0.6156 1.5528 46 1 4.2469 -0.7238 3.3267 47 1 4.5393 -3.0162 4.4216 48 1 4.5951 -4.4678 3.3930 49 1 5.9776 -3.3473 3.4262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188688403.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:58 Heat of formation + Delta-G solvation = -71.567345 kcal Electronic energy + Delta-G solvation = -29027.856896 eV Core-core repulsion = 25146.870253 eV Total energy + Delta-G solvation = -3880.986643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.62261 -39.05519 -37.20515 -36.25873 -35.70622 -33.69805 -32.93344 -31.70643 -30.13443 -29.41779 -27.56061 -27.27583 -26.80520 -25.19605 -22.66850 -21.95207 -20.92220 -20.77956 -20.06035 -19.64921 -18.07688 -16.93402 -16.75260 -15.88683 -15.67278 -15.54060 -15.01128 -14.74738 -14.61645 -14.41614 -14.12579 -13.84927 -13.30561 -13.20181 -13.10210 -12.80617 -12.67908 -12.65190 -12.50222 -12.43638 -12.27559 -12.01615 -11.71272 -11.63794 -11.47292 -11.25490 -11.13831 -11.07666 -10.97368 -10.77922 -10.63281 -10.44606 -9.97775 -9.86250 -9.66081 -9.31768 -9.26259 -9.00918 -8.65842 -7.61688 -7.38010 -6.64203 -4.41400 2.18422 2.45411 2.81615 2.84595 3.11415 3.14372 3.16978 3.71619 3.86897 3.99132 4.41644 4.62015 4.69369 4.72772 4.83346 4.91513 4.93895 5.18000 5.24267 5.30257 5.36150 5.45933 5.55119 5.58873 5.59337 5.75411 5.77053 5.80580 5.88893 5.95420 5.98712 6.10652 6.14298 6.26395 6.29601 6.37294 6.68804 6.72075 6.79137 6.99304 7.03770 7.26773 7.28273 7.41087 7.70671 7.77742 7.94162 8.01529 8.13312 8.22328 8.54531 8.86090 8.87527 8.93833 10.29899 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.002809 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.672748 B = 9966.094278 C =10773.946728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.136 3.864 3 C -0.160 4.160 4 N -0.725 5.725 5 C 0.518 3.482 6 O -0.533 6.533 7 C 0.135 3.865 8 H 0.106 0.894 9 N -0.722 5.722 10 C 0.569 3.431 11 O -0.540 6.540 12 C -0.135 4.135 13 C -0.200 4.200 14 C -0.107 4.107 15 C -0.196 4.196 16 C 0.095 3.905 17 C -0.467 4.467 18 H 0.079 0.921 19 C 0.070 3.930 20 N -0.804 5.804 21 Si 0.914 3.086 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.273 1.273 25 C -0.076 4.076 26 C -0.098 4.098 27 C -0.154 4.154 28 C -0.139 4.139 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.402 0.598 37 H 0.408 0.592 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.280 0.720 42 H 0.138 0.862 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.062 0.938 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.749 17.048 -9.560 19.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.032 3.968 3 C -0.218 4.218 4 N -0.378 5.378 5 C 0.303 3.697 6 O -0.408 6.408 7 C 0.026 3.974 8 H 0.124 0.876 9 N -0.377 5.377 10 C 0.361 3.639 11 O -0.417 6.417 12 C -0.138 4.138 13 C -0.220 4.220 14 C -0.126 4.126 15 C -0.216 4.216 16 C 0.093 3.907 17 C -0.497 4.497 18 H 0.097 0.903 19 C -0.146 4.146 20 N -0.430 5.430 21 Si 0.739 3.261 22 H -0.186 1.186 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.096 4.096 26 C -0.118 4.118 27 C -0.212 4.212 28 C -0.196 4.196 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.237 0.763 37 H 0.246 0.754 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.116 0.884 41 H 0.091 0.909 42 H 0.156 0.844 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.896 17.070 -9.391 19.503 hybrid contribution 0.094 -0.366 0.562 0.677 sum 0.990 16.703 -8.830 18.919 Atomic orbital electron populations 1.22195 0.95209 1.02959 1.01977 1.20950 0.94352 0.92751 0.88763 1.22085 1.01745 0.95017 1.02973 1.46189 1.67814 1.06858 1.16955 1.20765 0.77606 0.82431 0.88872 1.90690 1.48832 1.65283 1.36044 1.20787 0.95053 0.84474 0.97104 0.87636 1.45776 1.71177 1.09203 1.11562 1.18746 0.75671 0.87131 0.82397 1.90696 1.48684 1.71245 1.31121 1.19491 1.07330 0.91360 0.95659 1.20506 1.10382 0.95757 0.95355 1.20483 1.01119 0.94026 0.96926 1.21279 1.09515 0.98359 0.92425 1.17645 0.89604 0.91037 0.92437 1.19530 1.13227 1.17920 0.99058 0.90325 1.25885 0.94396 0.94708 0.99637 1.69739 1.12358 1.27158 1.33740 0.86162 0.79019 0.79931 0.80972 1.18600 1.20003 1.19874 1.21759 0.98107 0.93281 0.96439 1.21437 0.92664 0.96761 1.00916 1.21980 1.02138 0.95297 1.01738 1.21882 0.98991 1.01006 0.97730 0.91796 0.92457 0.91729 0.89487 0.91897 0.90924 0.91983 0.76324 0.75368 0.88895 0.88735 0.88446 0.90866 0.84424 0.90849 0.91871 0.92433 0.92172 0.91227 0.91883 0.93391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.14 1.11 3.15 -67.92 -0.21 0.90 16 3 C -0.16 -0.85 9.38 37.16 0.35 -0.50 16 4 N -0.72 -6.67 3.81 -53.80 -0.21 -6.88 16 5 C 0.52 6.72 6.61 -10.99 -0.07 6.65 16 6 O -0.53 -8.59 15.61 5.56 0.09 -8.51 16 7 C 0.14 1.91 2.24 -69.08 -0.15 1.75 16 8 H 0.11 1.50 7.58 -51.93 -0.39 1.10 16 9 N -0.72 -12.55 4.81 -55.86 -0.27 -12.82 16 10 C 0.57 12.13 5.99 -12.31 -0.07 12.06 16 11 O -0.54 -12.50 13.46 5.32 0.07 -12.43 16 12 C -0.14 -3.19 5.87 -105.04 -0.62 -3.81 16 13 C -0.20 -4.32 9.55 -38.92 -0.37 -4.69 16 14 C -0.11 -2.33 10.01 -39.72 -0.40 -2.73 16 15 C -0.20 -4.68 9.78 -38.81 -0.38 -5.06 16 16 C 0.10 2.52 5.51 -106.87 -0.59 1.93 16 17 C -0.47 -12.36 9.04 -37.73 -0.34 -12.70 16 18 H 0.08 1.99 7.85 -52.49 -0.41 1.58 16 19 C 0.07 1.78 5.37 -17.35 -0.09 1.69 16 20 N -0.80 -21.40 10.82 55.55 0.60 -20.80 16 21 Si 0.91 19.12 29.56 -169.99 -5.02 14.09 16 22 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 C -0.08 -2.00 8.17 -38.44 -0.31 -2.32 16 26 C -0.10 -1.25 2.67 -90.62 -0.24 -1.49 16 27 C -0.15 -1.41 8.20 37.16 0.30 -1.11 16 28 C -0.14 -2.14 7.68 37.16 0.29 -1.86 16 29 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.85 7.65 -51.93 -0.40 0.45 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.40 2.82 7.77 -40.82 -0.32 2.50 16 37 H 0.41 7.03 5.76 -40.82 -0.23 6.80 16 38 H 0.09 1.76 6.38 -52.49 -0.33 1.42 16 39 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 40 H 0.10 2.16 8.06 -52.49 -0.42 1.74 16 41 H 0.28 6.88 8.30 -40.82 -0.34 6.54 16 42 H 0.14 3.94 5.95 -52.48 -0.31 3.63 16 43 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.46 6.50 -51.93 -0.34 0.12 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.07 1.15 7.26 -51.93 -0.38 0.78 16 48 H 0.06 1.19 5.89 -51.93 -0.31 0.88 16 49 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 392.48 15.07 5.91 5.91 Total: -1.00 -30.37 392.48 -9.02 -39.39 By element: Atomic # 1 Polarization: 21.97 SS G_CDS: -7.63 Total: 14.34 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -2.57 Total: -12.31 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.13 Total: -40.49 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: 0.16 Total: -20.93 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.37 -9.02 -39.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188688403.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.179 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds