Wall clock time and date at job start Tue Mar 31 2020 17:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47048 * 2 1 4 4 N 1.46507 * 109.46840 * 119.99729 * 2 1 3 5 5 C 1.34771 * 120.00100 * 85.00052 * 4 2 1 6 6 O 1.21282 * 120.00029 * 355.20688 * 5 4 2 7 7 C 1.50699 * 120.00206 * 175.20231 * 5 4 2 8 8 H 1.08999 * 109.47050 * 39.85423 * 7 5 4 9 9 N 1.46502 * 109.47186 * 159.85536 * 7 5 4 10 10 C 1.34770 * 119.99776 * 204.99962 * 9 7 5 11 11 O 1.21548 * 120.00556 * 0.02562 * 10 9 7 12 12 C 1.47890 * 119.99805 * 180.02562 * 10 9 7 13 13 C 1.39918 * 120.02330 * 359.72640 * 12 10 9 14 14 C 1.38329 * 120.35450 * 179.71780 * 13 12 10 15 15 C 1.37754 * 120.41530 * 0.55923 * 14 13 12 16 16 C 1.40753 * 120.03769 * 359.72562 * 15 14 13 17 17 C 1.41437 * 120.17784 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99761 * 324.86852 * 17 16 15 19 19 C 1.39927 * 120.00077 * 144.87220 * 17 16 15 20 20 N 1.30826 * 120.00317 * 358.94027 * 19 17 16 21 21 Si 1.86807 * 120.00148 * 178.94185 * 19 17 16 22 22 H 1.48498 * 109.46764 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47058 * 119.99847 * 21 19 17 24 24 H 1.48504 * 109.46891 * 240.00037 * 21 19 17 25 25 C 1.38995 * 120.02709 * 180.02562 * 12 10 9 26 26 C 1.53000 * 109.47348 * 279.85711 * 7 5 4 27 27 C 1.53003 * 109.46952 * 63.93171 * 26 7 5 28 28 C 1.52998 * 109.47215 * 183.93282 * 26 7 5 29 29 H 1.08996 * 109.47062 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46915 * 300.00239 * 1 2 3 31 31 H 1.09003 * 109.46801 * 60.00486 * 1 2 3 32 32 H 1.09000 * 109.47638 * 239.99908 * 2 1 3 33 33 H 1.09003 * 109.47231 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.46922 * 299.99439 * 3 2 1 35 35 H 1.08998 * 109.47458 * 60.00094 * 3 2 1 36 36 H 0.96996 * 119.99825 * 264.99747 * 4 2 1 37 37 H 0.96997 * 119.99973 * 25.00085 * 9 7 5 38 38 H 1.07997 * 119.82040 * 359.97438 * 13 12 10 39 39 H 1.08006 * 119.79280 * 180.25989 * 14 13 12 40 40 H 1.07999 * 119.97969 * 179.74156 * 15 14 13 41 41 H 0.97003 * 120.00697 * 180.02562 * 20 19 17 42 42 H 1.08005 * 120.20050 * 359.97438 * 25 12 10 43 43 H 1.09000 * 109.47136 * 303.93840 * 26 7 5 44 44 H 1.09000 * 109.46817 * 173.83284 * 27 26 7 45 45 H 1.09001 * 109.47229 * 293.82909 * 27 26 7 46 46 H 1.08993 * 109.47380 * 53.83390 * 27 26 7 47 47 H 1.08995 * 109.47097 * 299.99747 * 28 26 7 48 48 H 1.09000 * 109.47085 * 59.99943 * 28 26 7 49 49 H 1.09007 * 109.46761 * 179.97438 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1470 -2.0321 1.1946 6 8 1.7774 -2.6756 0.2353 7 6 2.7503 -2.7328 2.3846 8 1 2.3929 -2.2644 3.3016 9 7 2.3569 -4.1440 2.3716 10 6 2.3255 -4.8453 3.5220 11 8 2.6230 -4.3070 4.5704 12 6 1.9289 -6.2700 3.5088 13 6 1.5809 -6.8887 2.3031 14 6 1.2145 -8.2224 2.2820 15 6 1.1770 -8.9539 3.4487 16 6 1.5181 -8.3470 4.6720 17 6 1.4811 -9.0954 5.8716 18 1 0.7269 -9.8558 6.0106 19 6 2.4216 -8.8504 6.8783 20 7 3.3479 -7.9436 6.7016 21 14 2.3546 -9.8183 8.4746 22 1 1.2209 -10.7762 8.4255 23 1 3.6260 -10.5641 8.6550 24 1 2.1633 -8.8836 9.6126 25 6 1.8958 -6.9938 4.6950 26 6 4.2753 -2.6278 2.3193 27 6 4.6906 -1.1595 2.4316 28 6 4.8911 -3.4218 3.4731 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 2.2490 -0.1823 1.9895 37 1 2.1192 -4.5735 1.5350 38 1 1.6023 -6.3229 1.3834 39 1 0.9516 -8.6920 1.3455 40 1 0.8860 -9.9936 3.4246 41 1 4.0001 -7.7740 7.3993 42 1 2.1594 -6.5191 5.6286 43 1 4.6271 -3.0332 1.3706 44 1 5.7767 -1.0931 2.4953 45 1 4.3443 -0.6156 1.5528 46 1 4.2469 -0.7238 3.3267 47 1 4.5393 -3.0162 4.4216 48 1 4.5951 -4.4678 3.3930 49 1 5.9776 -3.3473 3.4262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188688403.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:57 Heat of formation + Delta-G solvation = -89.991865 kcal Electronic energy + Delta-G solvation = -29028.655844 eV Core-core repulsion = 25146.870253 eV Total energy + Delta-G solvation = -3881.785590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.83907 -40.51592 -38.92860 -37.25866 -36.87784 -35.56422 -34.39272 -32.53325 -31.93109 -31.29350 -28.53822 -28.11527 -27.84797 -27.07497 -24.24210 -22.96556 -22.74256 -21.66787 -21.33853 -21.11965 -19.71065 -18.45659 -17.90827 -17.27300 -17.02304 -16.82302 -16.62487 -16.35945 -15.80490 -15.53902 -15.41879 -15.03348 -14.92992 -14.54033 -14.33529 -14.29832 -13.94545 -13.72322 -13.57890 -13.44639 -13.21166 -13.04378 -13.02043 -12.87054 -12.83920 -12.57816 -12.51414 -12.28525 -12.18906 -12.05285 -11.94148 -11.87115 -11.81500 -11.50639 -11.13742 -10.99148 -10.76028 -10.19129 -10.09660 -9.47464 -9.29889 -8.53889 -6.41982 0.34759 0.99945 1.38312 1.38936 1.45570 1.53861 1.79231 2.08665 2.23112 2.42704 2.84033 3.50320 3.62940 3.74057 3.86148 3.95738 4.00352 4.14717 4.22224 4.30942 4.33373 4.40690 4.54819 4.61011 4.73266 4.76668 4.77119 4.86588 4.89987 4.94130 4.97407 5.01980 5.08806 5.11141 5.15189 5.25705 5.29295 5.33768 5.34756 5.39437 5.43886 5.49761 5.53110 5.83980 5.89213 6.06197 6.27856 6.40693 6.48080 6.63768 6.92217 6.93961 7.07550 7.27264 8.41757 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.018666 B = 0.002809 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.672748 B = 9966.094278 C =10773.946728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.133 3.867 3 C -0.153 4.153 4 N -0.706 5.706 5 C 0.523 3.477 6 O -0.566 6.566 7 C 0.130 3.870 8 H 0.106 0.894 9 N -0.708 5.708 10 C 0.571 3.429 11 O -0.565 6.565 12 C -0.145 4.145 13 C -0.188 4.188 14 C -0.104 4.104 15 C -0.201 4.201 16 C 0.063 3.937 17 C -0.501 4.501 18 H 0.081 0.919 19 C 0.024 3.976 20 N -0.842 5.842 21 Si 0.988 3.012 22 H -0.254 1.254 23 H -0.267 1.267 24 H -0.270 1.270 25 C -0.108 4.108 26 C -0.091 4.091 27 C -0.147 4.147 28 C -0.133 4.133 29 H 0.032 0.968 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.415 0.585 37 H 0.410 0.590 38 H 0.126 0.874 39 H 0.137 0.863 40 H 0.112 0.888 41 H 0.283 0.717 42 H 0.105 0.895 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.022 0.978 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.788 18.870 -11.171 21.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.029 3.971 3 C -0.210 4.210 4 N -0.359 5.359 5 C 0.308 3.692 6 O -0.445 6.445 7 C 0.022 3.978 8 H 0.124 0.876 9 N -0.362 5.362 10 C 0.361 3.639 11 O -0.445 6.445 12 C -0.148 4.148 13 C -0.207 4.207 14 C -0.122 4.122 15 C -0.221 4.221 16 C 0.061 3.939 17 C -0.531 4.531 18 H 0.099 0.901 19 C -0.188 4.188 20 N -0.469 5.469 21 Si 0.809 3.191 22 H -0.177 1.177 23 H -0.192 1.192 24 H -0.195 1.195 25 C -0.128 4.128 26 C -0.111 4.111 27 C -0.204 4.204 28 C -0.191 4.191 29 H 0.051 0.949 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.253 0.747 37 H 0.249 0.751 38 H 0.143 0.857 39 H 0.154 0.846 40 H 0.130 0.870 41 H 0.093 0.907 42 H 0.123 0.877 43 H 0.090 0.910 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.041 0.959 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.930 18.951 -11.035 21.950 hybrid contribution 0.051 -0.837 0.883 1.218 sum 0.981 18.115 -10.152 20.789 Atomic orbital electron populations 1.22179 0.95320 1.01279 1.03350 1.21110 0.94259 0.94299 0.87400 1.22045 1.02124 0.92611 1.04237 1.46102 1.66236 1.05547 1.18000 1.20452 0.77479 0.83528 0.87737 1.90680 1.50573 1.66257 1.37002 1.21039 0.96317 0.82514 0.97949 0.87648 1.45598 1.69850 1.10590 1.10177 1.18453 0.75735 0.86646 0.83093 1.90675 1.49988 1.71564 1.32311 1.19807 1.06658 0.92766 0.95614 1.20901 1.08081 0.96112 0.95646 1.20925 0.99565 0.93890 0.97835 1.21548 1.08873 0.99309 0.92374 1.17998 0.90702 0.91334 0.93840 1.19800 1.14235 1.18814 1.00288 0.90126 1.26803 0.93558 0.95485 1.02939 1.69866 1.13268 1.28843 1.34947 0.85064 0.79353 0.78437 0.76243 1.17748 1.19184 1.19475 1.21531 1.01012 0.93912 0.96391 1.21392 0.91218 0.99047 0.99449 1.21945 1.03017 0.92369 1.03102 1.21789 1.00279 0.98790 0.98202 0.94912 0.91556 0.89968 0.90996 0.91246 0.89634 0.90775 0.74726 0.75127 0.85671 0.84553 0.87029 0.90667 0.87659 0.90988 0.90757 0.90716 0.91062 0.92784 0.95902 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.48 71.98 0.68 -1.75 16 2 C 0.13 1.86 3.15 44.99 0.14 2.00 16 3 C -0.15 -1.06 9.38 71.98 0.68 -0.39 16 4 N -0.71 -11.41 3.81 -442.52 -1.69 -13.09 16 5 C 0.52 12.89 6.61 87.66 0.58 13.47 16 6 O -0.57 -17.79 15.61 -3.04 -0.05 -17.83 16 7 C 0.13 3.59 2.24 44.24 0.10 3.69 16 8 H 0.11 2.94 7.58 -2.39 -0.02 2.93 16 9 N -0.71 -24.72 4.81 -448.94 -2.16 -26.88 16 10 C 0.57 25.14 5.99 86.80 0.52 25.66 16 11 O -0.57 -27.54 13.46 -3.87 -0.05 -27.60 16 12 C -0.15 -7.06 5.87 -20.13 -0.12 -7.18 16 13 C -0.19 -7.95 9.55 22.70 0.22 -7.73 16 14 C -0.10 -4.36 10.01 22.18 0.22 -4.13 16 15 C -0.20 -9.65 9.78 22.77 0.22 -9.43 16 16 C 0.06 3.49 5.51 -21.32 -0.12 3.38 16 17 C -0.50 -27.66 9.04 23.47 0.21 -27.45 16 18 H 0.08 4.23 7.85 -2.91 -0.02 4.21 16 19 C 0.02 1.28 5.37 85.25 0.46 1.74 16 20 N -0.84 -47.36 10.82 21.82 0.24 -47.13 16 21 Si 0.99 40.35 29.56 68.60 2.03 42.38 16 22 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 23 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 25 C -0.11 -6.04 8.17 23.01 0.19 -5.86 16 26 C -0.09 -2.23 2.67 -10.79 -0.03 -2.25 16 27 C -0.15 -2.30 8.20 71.98 0.59 -1.71 16 28 C -0.13 -4.17 7.68 71.98 0.55 -3.61 16 29 H 0.03 0.69 8.11 -2.39 -0.02 0.67 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.27 7.65 -2.39 -0.02 1.26 16 33 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.42 4.58 7.77 -92.71 -0.72 3.86 16 37 H 0.41 13.90 5.76 -92.71 -0.53 13.37 16 38 H 0.13 4.45 6.38 -2.91 -0.02 4.43 16 39 H 0.14 4.56 8.06 -2.91 -0.02 4.53 16 40 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 41 H 0.28 14.66 8.30 -92.71 -0.77 13.89 16 42 H 0.11 6.52 5.95 -2.91 -0.02 6.50 16 43 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 0.93 6.50 -2.39 -0.02 0.91 16 46 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.05 1.84 7.26 -2.39 -0.02 1.82 16 48 H 0.02 0.87 5.89 -2.39 -0.01 0.86 16 49 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 Total: -1.00 -71.20 392.48 3.13 -68.07 By element: Atomic # 1 Polarization: 43.91 SS G_CDS: -0.29 Total: 43.62 kcal Atomic # 6 Polarization: -26.64 SS G_CDS: 5.10 Total: -21.55 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -3.61 Total: -87.10 kcal Atomic # 8 Polarization: -45.33 SS G_CDS: -0.10 Total: -45.43 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 2.03 Total: 42.38 kcal Total: -71.20 3.13 -68.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188688403.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.918 kcal (2) G-P(sol) polarization free energy of solvation -71.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds