Wall clock time and date at job start Tue Mar 31 2020 17:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47474 * 2 1 4 4 C 1.53007 * 109.47238 * 120.00063 * 2 1 3 5 5 H 1.09002 * 109.46698 * 298.10701 * 4 2 1 6 6 C 1.50692 * 109.47212 * 178.10382 * 4 2 1 7 7 O 1.21277 * 120.00137 * 325.40365 * 6 4 2 8 8 N 1.34779 * 119.99574 * 145.40625 * 6 4 2 9 9 C 1.46500 * 119.99741 * 175.15652 * 8 6 4 10 10 H 1.09010 * 110.64491 * 31.85688 * 9 8 6 11 11 C 1.54336 * 111.00388 * 268.78139 * 9 8 6 12 12 N 1.47027 * 107.26593 * 219.59885 * 11 9 8 13 13 C 1.36937 * 125.64622 * 178.84565 * 12 11 9 14 14 H 1.08001 * 120.00025 * 345.19547 * 13 12 11 15 15 C 1.38815 * 119.99490 * 165.19642 * 13 12 11 16 16 N 1.31616 * 120.00170 * 330.49073 * 15 13 12 17 17 Si 1.86805 * 119.99681 * 150.49995 * 15 13 12 18 18 H 1.48501 * 109.46654 * 269.99679 * 17 15 13 19 19 H 1.48497 * 109.46852 * 149.99635 * 17 15 13 20 20 H 1.48500 * 109.47239 * 29.99410 * 17 15 13 21 21 C 1.47422 * 108.70198 * 358.58660 * 12 11 9 22 22 C 1.54916 * 104.83505 * 24.35220 * 21 12 11 23 23 H 1.08998 * 110.99761 * 81.06572 * 22 21 12 24 24 O 1.42894 * 111.00306 * 204.87688 * 22 21 12 25 25 C 1.50701 * 109.46805 * 58.10035 * 4 2 1 26 26 C 1.38231 * 120.00005 * 59.73475 * 25 4 2 27 27 C 1.38242 * 119.99598 * 179.76375 * 26 25 4 28 28 C 1.38227 * 120.00070 * 0.47989 * 27 26 25 29 29 C 1.38231 * 120.00197 * 359.79607 * 28 27 26 30 30 C 1.38234 * 120.00177 * 359.94820 * 29 28 27 31 31 H 1.09000 * 109.47197 * 300.00324 * 1 2 3 32 32 H 1.09003 * 109.46907 * 60.00262 * 1 2 3 33 33 H 1.08999 * 109.47266 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47197 * 239.99676 * 2 1 3 35 35 H 1.09001 * 109.47252 * 183.81038 * 3 2 1 36 36 H 1.09002 * 109.46671 * 303.80751 * 3 2 1 37 37 H 1.09004 * 109.46987 * 63.80349 * 3 2 1 38 38 H 0.96998 * 120.00315 * 355.15567 * 8 6 4 39 39 H 1.09004 * 109.99516 * 100.12623 * 11 9 8 40 40 H 1.09001 * 109.77955 * 338.95868 * 11 9 8 41 41 H 0.97002 * 119.99713 * 357.05175 * 16 15 13 42 42 H 1.09004 * 110.36775 * 143.19499 * 21 12 11 43 43 H 1.09000 * 110.36659 * 265.40545 * 21 12 11 44 44 H 0.96696 * 114.00629 * 298.54734 * 24 22 21 45 45 H 1.07997 * 120.00401 * 359.97438 * 26 25 4 46 46 H 1.08002 * 119.99544 * 180.25330 * 27 26 25 47 47 H 1.08000 * 120.00243 * 179.76658 * 28 27 26 48 48 H 1.08009 * 120.00391 * 179.97438 * 29 28 27 49 49 H 1.07998 * 120.00478 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7046 -0.1882 2.1389 6 6 3.5462 -0.7621 1.2260 7 8 4.1336 -0.8740 0.1709 8 7 4.2405 -0.6744 2.3778 9 6 5.6982 -0.8204 2.3673 10 1 6.1156 -0.4428 1.4338 11 6 6.1083 -2.2920 2.5869 12 7 7.2871 -2.2900 3.4657 13 6 7.9459 -3.4013 3.9197 14 1 7.4827 -4.3737 3.8402 15 6 9.2090 -3.2779 4.4821 16 7 10.0100 -2.3082 4.0945 17 14 9.7718 -4.4884 5.7888 18 1 9.3960 -3.9774 7.1315 19 1 11.2464 -4.6469 5.7143 20 1 9.1203 -5.8030 5.5593 21 6 7.6460 -0.8933 3.7720 22 6 6.3313 -0.0957 3.5844 23 1 5.6940 -0.1806 4.4646 24 8 6.6022 1.2743 3.2818 25 6 1.4996 -2.1279 1.2730 26 6 1.7895 -2.9972 0.2381 27 6 1.2977 -4.2890 0.2623 28 6 0.5079 -4.7082 1.3164 29 6 0.2133 -3.8371 2.3485 30 6 0.7094 -2.5470 2.3270 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 3.1279 1.4432 -0.0683 36 1 1.6221 1.9756 -0.8539 37 1 1.7335 1.9362 0.9221 38 1 3.7751 -0.5145 3.2137 39 1 6.3582 -2.7556 1.6326 40 1 5.2920 -2.8353 3.0628 41 1 9.7347 -1.7058 3.3858 42 1 7.9977 -0.8088 4.8002 43 1 8.4095 -0.5374 3.0802 44 1 7.0854 1.7425 3.9763 45 1 2.4029 -2.6683 -0.5877 46 1 1.5276 -4.9694 -0.5442 47 1 0.1206 -5.7162 1.3335 48 1 -0.4041 -4.1645 3.1720 49 1 0.4796 -1.8665 3.1335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196453790.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:17 Heat of formation + Delta-G solvation = -47.488209 kcal Electronic energy + Delta-G solvation = -29488.715951 eV Core-core repulsion = 25608.773458 eV Total energy + Delta-G solvation = -3879.942493 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.60308 -39.06039 -38.02916 -35.92389 -35.28665 -34.18118 -31.99747 -31.50856 -30.98834 -28.62008 -27.82936 -27.15822 -26.59698 -24.23484 -22.82833 -22.00701 -21.40559 -20.75086 -20.14290 -19.50032 -17.72525 -17.27551 -17.13387 -16.85754 -15.85337 -15.60549 -15.03401 -14.82414 -14.66657 -14.25966 -14.21037 -13.89432 -13.59697 -13.57339 -13.36871 -13.26408 -12.77595 -12.63283 -12.58699 -12.49162 -12.28284 -12.20148 -11.74354 -11.59429 -11.51330 -11.28938 -11.15848 -10.86634 -10.78776 -10.73569 -10.56230 -10.13902 -10.07569 -9.97811 -9.73370 -9.48440 -9.01425 -8.85750 -8.74988 -8.42149 -7.02729 -6.19223 -3.19023 1.19059 1.30826 2.75437 3.23524 3.48563 3.50015 3.67385 3.68745 4.30521 4.45472 4.54574 4.58031 4.68654 4.84993 4.89969 4.92305 5.03825 5.07421 5.18900 5.21935 5.27579 5.39927 5.42278 5.46487 5.49185 5.53119 5.55919 5.56311 5.69330 5.74991 5.87427 5.92185 5.94215 5.96241 5.97391 6.17852 6.18697 6.34293 6.39829 6.42910 6.48147 6.56342 6.69583 6.82449 6.86284 6.88213 7.63891 7.70143 7.89037 8.35590 8.42354 8.94065 9.75071 10.26446 11.16388 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012867 B = 0.003465 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.562719 B = 8078.538451 C = 9613.546517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.076 4.076 3 C -0.151 4.151 4 C -0.061 4.061 5 H 0.093 0.907 6 C 0.526 3.474 7 O -0.535 6.535 8 N -0.713 5.713 9 C 0.142 3.858 10 H 0.103 0.897 11 C 0.131 3.869 12 N -0.598 5.598 13 C -0.342 4.342 14 H 0.069 0.931 15 C -0.025 4.025 16 N -0.915 5.915 17 Si 1.071 2.929 18 H -0.293 1.293 19 H -0.289 1.289 20 H -0.292 1.292 21 C 0.119 3.881 22 C 0.077 3.923 23 H 0.066 0.934 24 O -0.562 6.562 25 C -0.071 4.071 26 C -0.103 4.103 27 C -0.118 4.118 28 C -0.120 4.120 29 C -0.121 4.121 30 C -0.112 4.112 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.053 0.947 38 H 0.397 0.603 39 H 0.033 0.967 40 H 0.032 0.968 41 H 0.269 0.731 42 H 0.057 0.943 43 H 0.038 0.962 44 H 0.378 0.622 45 H 0.128 0.872 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.943 4.552 -3.494 22.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.094 4.094 3 C -0.208 4.208 4 C -0.082 4.082 5 H 0.111 0.889 6 C 0.312 3.688 7 O -0.411 6.411 8 N -0.363 5.363 9 C 0.037 3.963 10 H 0.121 0.879 11 C 0.004 3.996 12 N -0.326 5.326 13 C -0.469 4.469 14 H 0.087 0.913 15 C -0.227 4.227 16 N -0.556 5.556 17 Si 0.900 3.100 18 H -0.220 1.220 19 H -0.216 1.216 20 H -0.218 1.218 21 C -0.007 4.007 22 C 0.017 3.983 23 H 0.084 0.916 24 O -0.367 6.367 25 C -0.072 4.072 26 C -0.121 4.121 27 C -0.136 4.136 28 C -0.139 4.139 29 C -0.139 4.139 30 C -0.130 4.130 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.231 0.769 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.225 0.775 45 H 0.146 0.854 46 H 0.140 0.860 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.531 3.819 -3.762 21.219 hybrid contribution -1.105 0.446 -0.032 1.192 sum -21.636 4.264 -3.794 22.376 Atomic orbital electron populations 1.21842 0.94592 1.02069 1.01698 1.20990 0.95644 0.96095 0.96706 1.21887 1.02016 0.95261 1.01657 1.20395 0.92115 0.94366 1.01355 0.88874 1.20320 0.89032 0.75592 0.83886 1.90686 1.71051 1.49027 1.30321 1.45953 1.07661 1.73079 1.09592 1.21962 0.78761 0.95990 0.99553 0.87888 1.21658 0.91095 0.92409 0.94454 1.44390 1.32062 1.01346 1.54849 1.19791 1.00573 0.86711 1.39814 0.91286 1.25796 0.91216 1.02913 1.02742 1.70786 1.34568 1.20317 1.29929 0.83421 0.75757 0.74697 0.76097 1.22049 1.21555 1.21803 1.22164 0.93034 0.85396 1.00149 1.23356 0.97772 0.81293 0.95886 0.91647 1.86453 1.79284 1.22894 1.48068 1.19357 0.98393 0.94037 0.95387 1.21163 0.98863 0.93464 0.98563 1.21163 0.97771 0.95952 0.98702 1.21168 0.98635 0.99579 0.94473 1.21092 1.00372 0.93742 0.98660 1.21020 0.97920 0.96374 0.97672 0.92729 0.92476 0.92304 0.89707 0.91980 0.92316 0.92820 0.76877 0.94914 0.94983 0.91889 0.92431 0.94418 0.77495 0.85404 0.86025 0.86190 0.86062 0.86061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.92 37.16 0.33 -0.89 16 2 C -0.08 -0.79 2.00 -90.62 -0.18 -0.98 16 3 C -0.15 -1.57 8.89 37.16 0.33 -1.24 16 4 C -0.06 -0.68 1.97 -92.92 -0.18 -0.87 16 5 H 0.09 0.85 7.83 -51.93 -0.41 0.44 16 6 C 0.53 7.92 5.55 -10.99 -0.06 7.86 16 7 O -0.53 -9.93 14.90 5.56 0.08 -9.85 16 8 N -0.71 -10.72 5.12 -52.03 -0.27 -10.99 16 9 C 0.14 2.67 3.08 -66.09 -0.20 2.47 16 10 H 0.10 2.18 7.49 -51.92 -0.39 1.79 16 11 C 0.13 2.89 7.01 -3.06 -0.02 2.87 16 12 N -0.60 -15.30 3.31 -170.05 -0.56 -15.87 16 13 C -0.34 -9.72 10.02 -15.06 -0.15 -9.87 16 14 H 0.07 1.98 7.98 -52.49 -0.42 1.56 16 15 C -0.02 -0.71 5.05 -17.43 -0.09 -0.79 16 16 N -0.92 -27.57 12.96 55.49 0.72 -26.85 16 17 Si 1.07 25.31 30.01 -169.99 -5.10 20.21 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.12 2.72 5.00 -2.53 -0.01 2.71 16 22 C 0.08 1.39 4.06 -24.58 -0.10 1.29 16 23 H 0.07 1.07 8.01 -51.93 -0.42 0.65 16 24 O -0.56 -9.17 13.47 -35.23 -0.47 -9.64 16 25 C -0.07 -0.82 3.42 -104.62 -0.36 -1.18 16 26 C -0.10 -1.28 8.83 -39.58 -0.35 -1.63 16 27 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 28 C -0.12 -1.22 10.05 -39.59 -0.40 -1.62 16 29 C -0.12 -1.18 10.05 -39.59 -0.40 -1.58 16 30 C -0.11 -1.13 9.67 -39.58 -0.38 -1.51 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.53 7.16 -51.93 -0.37 0.15 16 34 H 0.08 1.03 7.09 -51.93 -0.37 0.66 16 35 H 0.06 0.80 7.07 -51.93 -0.37 0.43 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.40 4.88 8.53 -40.82 -0.35 4.53 16 39 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.03 0.70 8.03 -51.93 -0.42 0.28 16 41 H 0.27 8.17 5.93 -40.82 -0.24 7.93 16 42 H 0.06 1.39 7.86 -51.93 -0.41 0.98 16 43 H 0.04 0.94 6.83 -51.93 -0.35 0.59 16 44 H 0.38 4.58 9.11 45.56 0.42 5.00 16 45 H 0.13 1.72 7.13 -52.49 -0.37 1.34 16 46 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 47 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 48 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 49 H 0.12 0.97 7.95 -52.49 -0.42 0.55 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -34.12 393.57 -9.36 -43.48 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -7.06 Total: 10.25 kcal Atomic # 6 Polarization: -4.05 SS G_CDS: -2.62 Total: -6.68 kcal Atomic # 7 Polarization: -53.59 SS G_CDS: -0.11 Total: -53.70 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.39 Total: -19.49 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.10 Total: 20.21 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.12 -9.36 -43.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196453790.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.013 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds