Wall clock time and date at job start Tue Mar 31 2020 17:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47474 * 2 1 4 4 C 1.53007 * 109.47238 * 120.00063 * 2 1 3 5 5 H 1.09002 * 109.46698 * 298.10701 * 4 2 1 6 6 C 1.50692 * 109.47212 * 178.10382 * 4 2 1 7 7 O 1.21277 * 120.00137 * 325.40365 * 6 4 2 8 8 N 1.34779 * 119.99574 * 145.40625 * 6 4 2 9 9 C 1.46500 * 119.99741 * 175.15652 * 8 6 4 10 10 H 1.09010 * 110.64491 * 31.85688 * 9 8 6 11 11 C 1.54336 * 111.00388 * 268.78139 * 9 8 6 12 12 N 1.47027 * 107.26593 * 219.59885 * 11 9 8 13 13 C 1.36937 * 125.64622 * 178.84565 * 12 11 9 14 14 H 1.08001 * 120.00025 * 345.19547 * 13 12 11 15 15 C 1.38815 * 119.99490 * 165.19642 * 13 12 11 16 16 N 1.31616 * 120.00170 * 330.49073 * 15 13 12 17 17 Si 1.86805 * 119.99681 * 150.49995 * 15 13 12 18 18 H 1.48501 * 109.46654 * 269.99679 * 17 15 13 19 19 H 1.48497 * 109.46852 * 149.99635 * 17 15 13 20 20 H 1.48500 * 109.47239 * 29.99410 * 17 15 13 21 21 C 1.47422 * 108.70198 * 358.58660 * 12 11 9 22 22 C 1.54916 * 104.83505 * 24.35220 * 21 12 11 23 23 H 1.08998 * 110.99761 * 81.06572 * 22 21 12 24 24 O 1.42894 * 111.00306 * 204.87688 * 22 21 12 25 25 C 1.50701 * 109.46805 * 58.10035 * 4 2 1 26 26 C 1.38231 * 120.00005 * 59.73475 * 25 4 2 27 27 C 1.38242 * 119.99598 * 179.76375 * 26 25 4 28 28 C 1.38227 * 120.00070 * 0.47989 * 27 26 25 29 29 C 1.38231 * 120.00197 * 359.79607 * 28 27 26 30 30 C 1.38234 * 120.00177 * 359.94820 * 29 28 27 31 31 H 1.09000 * 109.47197 * 300.00324 * 1 2 3 32 32 H 1.09003 * 109.46907 * 60.00262 * 1 2 3 33 33 H 1.08999 * 109.47266 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47197 * 239.99676 * 2 1 3 35 35 H 1.09001 * 109.47252 * 183.81038 * 3 2 1 36 36 H 1.09002 * 109.46671 * 303.80751 * 3 2 1 37 37 H 1.09004 * 109.46987 * 63.80349 * 3 2 1 38 38 H 0.96998 * 120.00315 * 355.15567 * 8 6 4 39 39 H 1.09004 * 109.99516 * 100.12623 * 11 9 8 40 40 H 1.09001 * 109.77955 * 338.95868 * 11 9 8 41 41 H 0.97002 * 119.99713 * 357.05175 * 16 15 13 42 42 H 1.09004 * 110.36775 * 143.19499 * 21 12 11 43 43 H 1.09000 * 110.36659 * 265.40545 * 21 12 11 44 44 H 0.96696 * 114.00629 * 298.54734 * 24 22 21 45 45 H 1.07997 * 120.00401 * 359.97438 * 26 25 4 46 46 H 1.08002 * 119.99544 * 180.25330 * 27 26 25 47 47 H 1.08000 * 120.00243 * 179.76658 * 28 27 26 48 48 H 1.08009 * 120.00391 * 179.97438 * 29 28 27 49 49 H 1.07998 * 120.00478 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.7046 -0.1882 2.1389 6 6 3.5462 -0.7621 1.2260 7 8 4.1336 -0.8740 0.1709 8 7 4.2405 -0.6744 2.3778 9 6 5.6982 -0.8204 2.3673 10 1 6.1156 -0.4428 1.4338 11 6 6.1083 -2.2920 2.5869 12 7 7.2871 -2.2900 3.4657 13 6 7.9459 -3.4013 3.9197 14 1 7.4827 -4.3737 3.8402 15 6 9.2090 -3.2779 4.4821 16 7 10.0100 -2.3082 4.0945 17 14 9.7718 -4.4884 5.7888 18 1 9.3960 -3.9774 7.1315 19 1 11.2464 -4.6469 5.7143 20 1 9.1203 -5.8030 5.5593 21 6 7.6460 -0.8933 3.7720 22 6 6.3313 -0.0957 3.5844 23 1 5.6940 -0.1806 4.4646 24 8 6.6022 1.2743 3.2818 25 6 1.4996 -2.1279 1.2730 26 6 1.7895 -2.9972 0.2381 27 6 1.2977 -4.2890 0.2623 28 6 0.5079 -4.7082 1.3164 29 6 0.2133 -3.8371 2.3485 30 6 0.7094 -2.5470 2.3270 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 3.1279 1.4432 -0.0683 36 1 1.6221 1.9756 -0.8539 37 1 1.7335 1.9362 0.9221 38 1 3.7751 -0.5145 3.2137 39 1 6.3582 -2.7556 1.6326 40 1 5.2920 -2.8353 3.0628 41 1 9.7347 -1.7058 3.3858 42 1 7.9977 -0.8088 4.8002 43 1 8.4095 -0.5374 3.0802 44 1 7.0854 1.7425 3.9763 45 1 2.4029 -2.6683 -0.5877 46 1 1.5276 -4.9694 -0.5442 47 1 0.1206 -5.7162 1.3335 48 1 -0.4041 -4.1645 3.1720 49 1 0.4796 -1.8665 3.1335 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196453790.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:16 Heat of formation + Delta-G solvation = -71.279172 kcal Electronic energy + Delta-G solvation = -29489.747605 eV Core-core repulsion = 25608.773458 eV Total energy + Delta-G solvation = -3880.974147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.71598 -40.30196 -39.35475 -36.92586 -36.83673 -35.72128 -33.77011 -32.49003 -31.78464 -30.29516 -29.34789 -28.10804 -27.72917 -26.15887 -23.64119 -23.05809 -22.61736 -22.35056 -21.72337 -20.48616 -19.71527 -18.63962 -18.24616 -17.89623 -17.31884 -16.52967 -16.27143 -16.16924 -15.76676 -15.68139 -15.55485 -15.38799 -15.16484 -14.82078 -14.53186 -14.29957 -14.14715 -14.03348 -13.63209 -13.51888 -13.38487 -13.29281 -13.20822 -12.98053 -12.69282 -12.52930 -12.43236 -12.09847 -11.96465 -11.90098 -11.83037 -11.74261 -11.68984 -11.55989 -11.24016 -10.90514 -10.59705 -10.22184 -9.82489 -9.62111 -9.15222 -8.45254 -5.42427 0.36331 0.49513 1.55356 1.57479 1.64589 1.83197 1.99130 2.57416 2.85586 2.87694 3.12628 3.42589 3.54304 3.60943 3.71073 3.81179 3.87387 3.93041 4.04523 4.13260 4.15334 4.21247 4.27941 4.37552 4.38281 4.44103 4.62501 4.65266 4.67141 4.75492 4.80350 4.80584 4.84352 4.97403 4.99192 4.99267 5.09467 5.15120 5.22969 5.32723 5.39680 5.43391 5.55834 5.56611 5.62436 5.65196 6.09643 6.20575 6.46598 6.70826 6.76965 7.17560 7.59751 8.13419 8.89560 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012867 B = 0.003465 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.562719 B = 8078.538451 C = 9613.546517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.074 4.074 3 C -0.148 4.148 4 C -0.050 4.050 5 H 0.127 0.873 6 C 0.523 3.477 7 O -0.576 6.576 8 N -0.702 5.702 9 C 0.157 3.843 10 H 0.074 0.926 11 C 0.134 3.866 12 N -0.617 5.617 13 C -0.357 4.357 14 H 0.062 0.938 15 C -0.073 4.073 16 N -0.940 5.940 17 Si 1.124 2.876 18 H -0.276 1.276 19 H -0.293 1.293 20 H -0.274 1.274 21 C 0.122 3.878 22 C 0.105 3.895 23 H 0.098 0.902 24 O -0.564 6.564 25 C -0.081 4.081 26 C -0.127 4.127 27 C -0.133 4.133 28 C -0.125 4.125 29 C -0.122 4.122 30 C -0.110 4.110 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.057 0.943 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.416 0.584 39 H 0.002 0.998 40 H 0.041 0.959 41 H 0.255 0.745 42 H 0.043 0.957 43 H 0.008 0.992 44 H 0.399 0.601 45 H 0.103 0.897 46 H 0.127 0.873 47 H 0.141 0.859 48 H 0.149 0.851 49 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.977 4.907 -0.912 25.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.093 4.093 3 C -0.205 4.205 4 C -0.071 4.071 5 H 0.145 0.855 6 C 0.311 3.689 7 O -0.455 6.455 8 N -0.353 5.353 9 C 0.051 3.949 10 H 0.092 0.908 11 C 0.007 3.993 12 N -0.345 5.345 13 C -0.484 4.484 14 H 0.080 0.920 15 C -0.269 4.269 16 N -0.582 5.582 17 Si 0.947 3.053 18 H -0.202 1.202 19 H -0.220 1.220 20 H -0.199 1.199 21 C -0.004 4.004 22 C 0.045 3.955 23 H 0.116 0.884 24 O -0.372 6.372 25 C -0.082 4.082 26 C -0.145 4.145 27 C -0.151 4.151 28 C -0.143 4.143 29 C -0.140 4.140 30 C -0.128 4.128 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.253 0.747 39 H 0.020 0.980 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.061 0.939 43 H 0.026 0.974 44 H 0.250 0.750 45 H 0.121 0.879 46 H 0.145 0.855 47 H 0.159 0.841 48 H 0.167 0.833 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -23.614 4.204 -1.165 24.014 hybrid contribution -0.161 0.311 -0.946 1.009 sum -23.776 4.515 -2.110 24.292 Atomic orbital electron populations 1.21766 0.92411 1.02116 1.03019 1.20964 0.97281 0.95702 0.95370 1.21862 0.99881 0.95507 1.03235 1.20422 0.88556 0.95058 1.03085 0.85509 1.21124 0.90758 0.74065 0.82971 1.90674 1.72286 1.50581 1.31979 1.45777 1.05844 1.72950 1.10758 1.21440 0.81231 0.93573 0.98694 0.90765 1.21668 0.90256 0.94928 0.92431 1.44640 1.32497 1.01901 1.55498 1.20049 1.00955 0.87563 1.39875 0.92048 1.27293 0.91433 1.04048 1.04127 1.70912 1.35355 1.21447 1.30494 0.82736 0.75083 0.73442 0.73993 1.20249 1.21984 1.19869 1.22118 0.95114 0.84914 0.98260 1.23013 0.94952 0.81357 0.96223 0.88409 1.86427 1.79597 1.21632 1.49512 1.19404 0.99219 0.93782 0.95756 1.21141 0.99821 0.94682 0.98836 1.21345 0.98385 0.95685 0.99734 1.21487 0.97950 1.00813 0.94036 1.21493 0.99999 0.93477 0.99027 1.21356 0.96847 0.97084 0.97533 0.90793 0.91757 0.92856 0.92465 0.95179 0.91244 0.90800 0.74673 0.98015 0.94072 0.93473 0.93909 0.97400 0.75029 0.87901 0.85499 0.84106 0.83308 0.83111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.92 71.98 0.64 -1.34 16 2 C -0.07 -1.50 2.00 -10.79 -0.02 -1.52 16 3 C -0.15 -2.90 8.89 71.98 0.64 -2.26 16 4 C -0.05 -1.05 1.97 -12.29 -0.02 -1.07 16 5 H 0.13 1.78 7.83 -2.39 -0.02 1.76 16 6 C 0.52 15.69 5.55 87.65 0.49 16.17 16 7 O -0.58 -22.58 14.90 -3.02 -0.04 -22.62 16 8 N -0.70 -20.26 5.12 -436.90 -2.24 -22.50 16 9 C 0.16 5.94 3.08 46.18 0.14 6.08 16 10 H 0.07 3.28 7.49 -2.38 -0.02 3.26 16 11 C 0.13 6.09 7.01 86.73 0.61 6.70 16 12 N -0.62 -32.38 3.31 -691.93 -2.29 -34.67 16 13 C -0.36 -20.68 10.02 84.03 0.84 -19.84 16 14 H 0.06 3.57 7.98 -2.91 -0.02 3.55 16 15 C -0.07 -4.20 5.05 84.86 0.43 -3.77 16 16 N -0.94 -58.04 12.96 21.65 0.28 -57.76 16 17 Si 1.12 50.91 30.01 68.60 2.06 52.97 16 18 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 21 C 0.12 5.71 5.00 86.86 0.43 6.15 16 22 C 0.11 3.65 4.06 31.99 0.13 3.78 16 23 H 0.10 2.86 8.01 -2.39 -0.02 2.84 16 24 O -0.56 -17.46 13.47 -148.98 -2.01 -19.46 16 25 C -0.08 -1.75 3.42 -19.87 -0.07 -1.82 16 26 C -0.13 -3.24 8.83 22.27 0.20 -3.04 16 27 C -0.13 -2.98 10.05 22.27 0.22 -2.76 16 28 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 29 C -0.12 -1.98 10.05 22.27 0.22 -1.76 16 30 C -0.11 -1.86 9.67 22.27 0.22 -1.65 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.05 0.85 7.16 -2.39 -0.02 0.84 16 34 H 0.06 1.47 7.09 -2.39 -0.02 1.45 16 35 H 0.03 0.78 7.07 -2.39 -0.02 0.76 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.42 8.89 8.53 -92.71 -0.79 8.10 16 39 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 40 H 0.04 1.80 8.03 -2.39 -0.02 1.78 16 41 H 0.25 16.13 5.93 -92.71 -0.55 15.58 16 42 H 0.04 2.10 7.86 -2.38 -0.02 2.08 16 43 H 0.01 0.43 6.83 -2.39 -0.02 0.41 16 44 H 0.40 8.80 9.11 -74.06 -0.67 8.12 16 45 H 0.10 3.06 7.13 -2.91 -0.02 3.04 16 46 H 0.13 2.52 8.06 -2.91 -0.02 2.49 16 47 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 48 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 49 H 0.15 1.62 7.95 -2.91 -0.02 1.59 16 Total: -1.00 -78.25 393.57 0.79 -77.46 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: -0.29 Total: 30.61 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 5.32 Total: -4.01 kcal Atomic # 7 Polarization: -110.68 SS G_CDS: -4.25 Total: -114.93 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -2.05 Total: -42.09 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.06 Total: 52.97 kcal Total: -78.25 0.79 -77.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196453790.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.176 kcal (2) G-P(sol) polarization free energy of solvation -78.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds