Wall clock time and date at job start Tue Mar 31 2020 17:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47122 * 2 1 4 4 C 1.53002 * 109.47048 * 174.77202 * 3 2 1 5 5 H 1.09000 * 109.47088 * 305.69057 * 4 3 2 6 6 C 1.50703 * 109.46965 * 65.69166 * 4 3 2 7 7 O 1.21277 * 120.00075 * 34.13303 * 6 4 3 8 8 N 1.34781 * 119.99905 * 214.12400 * 6 4 3 9 9 C 1.46494 * 119.99843 * 175.16006 * 8 6 4 10 10 H 1.09004 * 110.88684 * 37.43742 * 9 8 6 11 11 C 1.54902 * 111.00810 * 273.54998 * 9 8 6 12 12 N 1.47424 * 104.93191 * 204.82620 * 11 9 8 13 13 C 1.36932 * 125.65124 * 204.15826 * 12 11 9 14 14 H 1.08001 * 120.00255 * 6.37710 * 13 12 11 15 15 C 1.38808 * 120.00536 * 186.37944 * 13 12 11 16 16 N 1.31625 * 119.99847 * 7.21947 * 15 13 12 17 17 Si 1.86801 * 120.00643 * 187.22463 * 15 13 12 18 18 H 1.48499 * 109.47181 * 94.98170 * 17 15 13 19 19 H 1.48503 * 109.47166 * 214.98671 * 17 15 13 20 20 H 1.48499 * 109.46851 * 334.98428 * 17 15 13 21 21 C 1.47290 * 108.55842 * 24.15318 * 12 11 9 22 22 C 1.54330 * 107.30493 * 358.92930 * 21 12 11 23 23 H 1.08996 * 110.72146 * 96.17967 * 22 21 12 24 24 O 1.42898 * 110.71644 * 219.45439 * 22 21 12 25 25 C 1.50698 * 109.46927 * 185.69273 * 4 3 2 26 26 C 1.38232 * 120.00062 * 299.72629 * 25 4 3 27 27 C 1.38242 * 119.99957 * 179.74535 * 26 25 4 28 28 C 1.38239 * 119.99822 * 0.53028 * 27 26 25 29 29 C 1.38236 * 119.99830 * 359.74032 * 28 27 26 30 30 C 1.38234 * 120.00244 * 359.97438 * 29 28 27 31 31 H 1.09002 * 109.47425 * 60.00066 * 1 2 3 32 32 H 1.09007 * 109.47093 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47261 * 299.99788 * 1 2 3 34 34 H 1.09004 * 109.47195 * 239.99952 * 2 1 3 35 35 H 1.09002 * 109.47425 * 119.99934 * 2 1 3 36 36 H 1.08999 * 109.47256 * 54.77332 * 3 2 1 37 37 H 1.09001 * 109.46999 * 294.77034 * 3 2 1 38 38 H 0.97000 * 119.99525 * 355.16664 * 8 6 4 39 39 H 1.09004 * 110.36927 * 323.71709 * 11 9 8 40 40 H 1.09007 * 110.36573 * 85.93227 * 11 9 8 41 41 H 0.96994 * 120.00156 * 180.02562 * 16 15 13 42 42 H 1.08997 * 109.85773 * 239.50579 * 21 12 11 43 43 H 1.08997 * 110.00076 * 118.43060 * 21 12 11 44 44 H 0.96703 * 113.99685 * 293.51641 * 24 22 21 45 45 H 1.08000 * 120.00405 * 359.97438 * 26 25 4 46 46 H 1.08002 * 119.99991 * 180.29758 * 27 26 25 47 47 H 1.07995 * 119.99557 * 179.76750 * 28 27 26 48 48 H 1.08001 * 119.99831 * 179.97438 * 29 28 27 49 49 H 1.07997 * 120.00123 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5643 1.4445 0.1314 5 1 3.8538 0.8711 1.0120 6 6 4.1753 0.8212 -1.0971 7 8 3.6485 0.9716 -2.1792 8 7 5.3071 0.0968 -0.9934 9 6 5.8429 -0.5968 -2.1673 10 1 5.7056 0.0011 -3.0683 11 6 5.1997 -1.9969 -2.3266 12 7 6.1875 -2.7845 -3.0865 13 6 5.9109 -3.8826 -3.8564 14 1 4.8862 -4.1777 -4.0277 15 6 6.9473 -4.6165 -4.4166 16 7 8.1945 -4.3454 -4.0949 17 14 6.5723 -5.9888 -5.6273 18 1 6.6662 -5.4651 -7.0137 19 1 7.5522 -7.0899 -5.4465 20 1 5.2003 -6.5022 -5.3840 21 6 7.5198 -2.1919 -2.8784 22 6 7.3373 -0.9617 -1.9644 23 1 7.5331 -1.2217 -0.9242 24 8 8.1816 0.1112 -2.3865 25 6 4.0545 2.8626 0.2720 26 6 3.8093 3.7813 -0.7313 27 6 4.2544 5.0835 -0.6000 28 6 4.9542 5.4641 0.5298 29 6 5.2043 4.5439 1.5306 30 6 4.7541 3.2433 1.4019 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.6022 1.9827 0.8395 37 1 1.7551 1.9286 -0.9331 38 1 5.7668 0.0347 -0.1415 39 1 5.0257 -2.4479 -1.3496 40 1 4.2646 -1.9238 -2.8819 41 1 8.9188 -4.8580 -4.4866 42 1 7.9415 -1.8837 -3.8350 43 1 8.1788 -2.9155 -2.3987 44 1 9.1262 -0.0666 -2.2804 45 1 3.2668 3.4827 -1.6162 46 1 4.0587 5.8025 -1.3818 47 1 5.3052 6.4805 0.6306 48 1 5.7514 4.8412 2.4130 49 1 4.9498 2.5243 2.1836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001198392626.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:26 Heat of formation + Delta-G solvation = -48.805864 kcal Electronic energy + Delta-G solvation = -29093.655318 eV Core-core repulsion = 25213.655687 eV Total energy + Delta-G solvation = -3879.999631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.42917 -38.96682 -37.84907 -35.49025 -35.04237 -34.00952 -32.59362 -31.62162 -31.03214 -28.94380 -28.28811 -27.05839 -24.99918 -24.15690 -22.79773 -22.10037 -21.40368 -20.58375 -20.22237 -19.67244 -17.47715 -17.05728 -16.97620 -16.59152 -15.75427 -15.55654 -14.99762 -14.93350 -14.71391 -14.44692 -14.06793 -13.99813 -13.61436 -13.36499 -13.24268 -13.16657 -12.79562 -12.71783 -12.45263 -12.37653 -12.05876 -11.77699 -11.67093 -11.49101 -11.31364 -11.24129 -11.05550 -10.92302 -10.82909 -10.80575 -10.66254 -10.16857 -9.89918 -9.80584 -9.76912 -9.35289 -9.05375 -8.85561 -8.75360 -8.62728 -6.90643 -5.76389 -3.12474 1.15648 1.26963 2.82055 3.30630 3.39404 3.44877 3.46373 3.66499 4.42974 4.46055 4.61185 4.62193 4.77223 4.85082 4.89776 4.98675 5.05785 5.09678 5.18831 5.21895 5.37111 5.43068 5.45193 5.50621 5.57399 5.64427 5.68075 5.73646 5.80991 5.84421 5.86184 5.92013 6.04766 6.08756 6.14068 6.21322 6.27968 6.30666 6.38652 6.46133 6.54565 6.61785 6.84765 6.90519 7.29454 7.45904 7.68826 7.74888 8.09754 8.16779 8.43828 9.13371 9.74531 10.38234 11.34339 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.003095 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.092509 B = 9043.356121 C =10448.661906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.098 4.098 4 C -0.067 4.067 5 H 0.095 0.905 6 C 0.525 3.475 7 O -0.533 6.533 8 N -0.714 5.714 9 C 0.139 3.861 10 H 0.101 0.899 11 C 0.131 3.869 12 N -0.598 5.598 13 C -0.228 4.228 14 H 0.080 0.920 15 C -0.007 4.007 16 N -0.922 5.922 17 Si 0.914 3.086 18 H -0.288 1.288 19 H -0.291 1.291 20 H -0.280 1.280 21 C 0.149 3.851 22 C 0.070 3.930 23 H 0.058 0.942 24 O -0.563 6.563 25 C -0.075 4.075 26 C -0.102 4.102 27 C -0.119 4.119 28 C -0.121 4.121 29 C -0.122 4.122 30 C -0.112 4.112 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.396 0.604 39 H 0.023 0.977 40 H 0.049 0.951 41 H 0.253 0.747 42 H 0.045 0.955 43 H 0.065 0.935 44 H 0.376 0.624 45 H 0.129 0.871 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.192 16.272 14.529 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C -0.136 4.136 4 C -0.088 4.088 5 H 0.113 0.887 6 C 0.310 3.690 7 O -0.410 6.410 8 N -0.364 5.364 9 C 0.034 3.966 10 H 0.119 0.881 11 C 0.003 3.997 12 N -0.326 5.326 13 C -0.356 4.356 14 H 0.098 0.902 15 C -0.204 4.204 16 N -0.569 5.569 17 Si 0.745 3.255 18 H -0.215 1.215 19 H -0.217 1.217 20 H -0.205 1.205 21 C 0.023 3.977 22 C 0.010 3.990 23 H 0.076 0.924 24 O -0.368 6.368 25 C -0.076 4.076 26 C -0.120 4.120 27 C -0.137 4.137 28 C -0.139 4.139 29 C -0.140 4.140 30 C -0.130 4.130 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.230 0.770 39 H 0.040 0.960 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.083 0.917 44 H 0.223 0.777 45 H 0.147 0.853 46 H 0.140 0.860 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.039 16.464 13.479 22.746 hybrid contribution 0.838 -1.071 -0.066 1.362 sum -7.201 15.393 13.413 21.650 Atomic orbital electron populations 1.21720 0.95660 1.01641 1.01568 1.21586 0.96182 0.96388 1.02517 1.21525 0.91065 0.97771 1.03212 1.20383 0.97471 0.93413 0.97565 0.88724 1.20295 0.80491 0.77908 0.90294 1.90691 1.61692 1.59954 1.28621 1.45952 1.26226 1.50948 1.13231 1.22226 0.91523 0.94070 0.88806 0.88069 1.21829 0.93824 0.88535 0.95470 1.44286 1.01785 1.31169 1.55350 1.19089 0.92877 1.01371 1.22267 0.90181 1.24814 0.95286 0.99426 1.00849 1.69914 0.97921 1.42903 1.46208 0.86059 0.77274 0.81130 0.81082 1.21534 1.21720 1.20514 1.21904 0.88759 0.90191 0.96835 1.23429 0.89292 0.88734 0.97537 0.92379 1.86476 1.20393 1.41488 1.88453 1.19463 0.99010 0.93998 0.95115 1.21194 0.99144 0.92998 0.98654 1.21171 0.98435 0.96216 0.97902 1.21169 0.98962 0.99553 0.94263 1.21096 1.00278 0.93480 0.99132 1.21049 0.98116 0.96519 0.97336 0.92658 0.92719 0.93002 0.91240 0.92129 0.91199 0.90317 0.77015 0.95954 0.93261 0.93687 0.93702 0.91677 0.77712 0.85300 0.86030 0.86215 0.86061 0.85942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.13 -1.41 5.67 -26.73 -0.15 -1.56 16 3 C -0.10 -1.05 4.17 -26.73 -0.11 -1.16 16 4 C -0.07 -0.75 2.35 -92.92 -0.22 -0.96 16 5 H 0.09 0.85 7.87 -51.93 -0.41 0.44 16 6 C 0.52 7.90 5.64 -10.98 -0.06 7.84 16 7 O -0.53 -9.98 15.15 5.56 0.08 -9.90 16 8 N -0.71 -10.73 5.23 -51.73 -0.27 -11.00 16 9 C 0.14 2.64 3.08 -65.79 -0.20 2.44 16 10 H 0.10 2.23 7.67 -51.93 -0.40 1.83 16 11 C 0.13 2.81 6.92 -2.53 -0.02 2.80 16 12 N -0.60 -15.39 3.40 -169.86 -0.58 -15.97 16 13 C -0.23 -6.40 10.26 -15.06 -0.15 -6.56 16 14 H 0.08 2.19 7.84 -52.49 -0.41 1.78 16 15 C -0.01 -0.21 5.45 -17.43 -0.09 -0.31 16 16 N -0.92 -26.72 10.50 55.49 0.58 -26.14 16 17 Si 0.91 22.18 29.56 -169.99 -5.02 17.15 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C 0.15 3.54 5.21 -2.91 -0.02 3.52 16 22 C 0.07 1.30 3.95 -24.89 -0.10 1.20 16 23 H 0.06 0.95 8.00 -51.93 -0.42 0.54 16 24 O -0.56 -9.85 13.39 -35.23 -0.47 -10.32 16 25 C -0.08 -0.84 4.77 -104.62 -0.50 -1.34 16 26 C -0.10 -1.22 8.86 -39.58 -0.35 -1.57 16 27 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 28 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16 29 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 30 C -0.11 -1.07 9.67 -39.58 -0.38 -1.46 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.94 7.41 -51.93 -0.38 0.56 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.96 7.12 -51.93 -0.37 0.59 16 38 H 0.40 4.83 8.52 -40.82 -0.35 4.48 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.04 1.19 7.83 -51.93 -0.41 0.79 16 43 H 0.07 1.68 7.01 -51.93 -0.36 1.31 16 44 H 0.38 4.98 9.12 45.56 0.42 5.39 16 45 H 0.13 1.67 7.19 -52.49 -0.38 1.29 16 46 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 47 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 48 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 49 H 0.12 0.90 7.95 -52.49 -0.42 0.49 16 LS Contribution 397.62 15.07 5.99 5.99 Total: -1.00 -33.37 397.62 -10.12 -43.49 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -7.25 Total: 9.53 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -3.18 Total: -2.84 kcal Atomic # 7 Polarization: -52.84 SS G_CDS: -0.27 Total: -53.11 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.39 Total: -20.22 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.37 -10.12 -43.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198392626.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.318 kcal (2) G-P(sol) polarization free energy of solvation -33.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds