Wall clock time and date at job start Tue Mar 31 2020 17:21:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47122 * 2 1 4 4 C 1.53002 * 109.47048 * 174.77202 * 3 2 1 5 5 H 1.09000 * 109.47088 * 305.69057 * 4 3 2 6 6 C 1.50703 * 109.46965 * 65.69166 * 4 3 2 7 7 O 1.21277 * 120.00075 * 34.13303 * 6 4 3 8 8 N 1.34781 * 119.99905 * 214.12400 * 6 4 3 9 9 C 1.46494 * 119.99843 * 175.16006 * 8 6 4 10 10 H 1.09004 * 110.88684 * 37.43742 * 9 8 6 11 11 C 1.54902 * 111.00810 * 273.54998 * 9 8 6 12 12 N 1.47424 * 104.93191 * 204.82620 * 11 9 8 13 13 C 1.36932 * 125.65124 * 204.15826 * 12 11 9 14 14 H 1.08001 * 120.00255 * 6.37710 * 13 12 11 15 15 C 1.38808 * 120.00536 * 186.37944 * 13 12 11 16 16 N 1.31625 * 119.99847 * 7.21947 * 15 13 12 17 17 Si 1.86801 * 120.00643 * 187.22463 * 15 13 12 18 18 H 1.48499 * 109.47181 * 94.98170 * 17 15 13 19 19 H 1.48503 * 109.47166 * 214.98671 * 17 15 13 20 20 H 1.48499 * 109.46851 * 334.98428 * 17 15 13 21 21 C 1.47290 * 108.55842 * 24.15318 * 12 11 9 22 22 C 1.54330 * 107.30493 * 358.92930 * 21 12 11 23 23 H 1.08996 * 110.72146 * 96.17967 * 22 21 12 24 24 O 1.42898 * 110.71644 * 219.45439 * 22 21 12 25 25 C 1.50698 * 109.46927 * 185.69273 * 4 3 2 26 26 C 1.38232 * 120.00062 * 299.72629 * 25 4 3 27 27 C 1.38242 * 119.99957 * 179.74535 * 26 25 4 28 28 C 1.38239 * 119.99822 * 0.53028 * 27 26 25 29 29 C 1.38236 * 119.99830 * 359.74032 * 28 27 26 30 30 C 1.38234 * 120.00244 * 359.97438 * 29 28 27 31 31 H 1.09002 * 109.47425 * 60.00066 * 1 2 3 32 32 H 1.09007 * 109.47093 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47261 * 299.99788 * 1 2 3 34 34 H 1.09004 * 109.47195 * 239.99952 * 2 1 3 35 35 H 1.09002 * 109.47425 * 119.99934 * 2 1 3 36 36 H 1.08999 * 109.47256 * 54.77332 * 3 2 1 37 37 H 1.09001 * 109.46999 * 294.77034 * 3 2 1 38 38 H 0.97000 * 119.99525 * 355.16664 * 8 6 4 39 39 H 1.09004 * 110.36927 * 323.71709 * 11 9 8 40 40 H 1.09007 * 110.36573 * 85.93227 * 11 9 8 41 41 H 0.96994 * 120.00156 * 180.02562 * 16 15 13 42 42 H 1.08997 * 109.85773 * 239.50579 * 21 12 11 43 43 H 1.08997 * 110.00076 * 118.43060 * 21 12 11 44 44 H 0.96703 * 113.99685 * 293.51641 * 24 22 21 45 45 H 1.08000 * 120.00405 * 359.97438 * 26 25 4 46 46 H 1.08002 * 119.99991 * 180.29758 * 27 26 25 47 47 H 1.07995 * 119.99557 * 179.76750 * 28 27 26 48 48 H 1.08001 * 119.99831 * 179.97438 * 29 28 27 49 49 H 1.07997 * 120.00123 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5643 1.4445 0.1314 5 1 3.8538 0.8711 1.0120 6 6 4.1753 0.8212 -1.0971 7 8 3.6485 0.9716 -2.1792 8 7 5.3071 0.0968 -0.9934 9 6 5.8429 -0.5968 -2.1673 10 1 5.7056 0.0011 -3.0683 11 6 5.1997 -1.9969 -2.3266 12 7 6.1875 -2.7845 -3.0865 13 6 5.9109 -3.8826 -3.8564 14 1 4.8862 -4.1777 -4.0277 15 6 6.9473 -4.6165 -4.4166 16 7 8.1945 -4.3454 -4.0949 17 14 6.5723 -5.9888 -5.6273 18 1 6.6662 -5.4651 -7.0137 19 1 7.5522 -7.0899 -5.4465 20 1 5.2003 -6.5022 -5.3840 21 6 7.5198 -2.1919 -2.8784 22 6 7.3373 -0.9617 -1.9644 23 1 7.5331 -1.2217 -0.9242 24 8 8.1816 0.1112 -2.3865 25 6 4.0545 2.8626 0.2720 26 6 3.8093 3.7813 -0.7313 27 6 4.2544 5.0835 -0.6000 28 6 4.9542 5.4641 0.5298 29 6 5.2043 4.5439 1.5306 30 6 4.7541 3.2433 1.4019 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.6022 1.9827 0.8395 37 1 1.7551 1.9286 -0.9331 38 1 5.7668 0.0347 -0.1415 39 1 5.0257 -2.4479 -1.3496 40 1 4.2646 -1.9238 -2.8819 41 1 8.9188 -4.8580 -4.4866 42 1 7.9415 -1.8837 -3.8350 43 1 8.1788 -2.9155 -2.3987 44 1 9.1262 -0.0666 -2.2804 45 1 3.2668 3.4827 -1.6162 46 1 4.0587 5.8025 -1.3818 47 1 5.3052 6.4805 0.6306 48 1 5.7514 4.8412 2.4130 49 1 4.9498 2.5243 2.1836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001198392626.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:25 Heat of formation + Delta-G solvation = -71.694465 kcal Electronic energy + Delta-G solvation = -29094.647843 eV Core-core repulsion = 25213.655687 eV Total energy + Delta-G solvation = -3880.992155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.53831 -40.10558 -39.22765 -36.71517 -36.40426 -35.54269 -33.76534 -33.21286 -31.76181 -30.34739 -29.55859 -28.73640 -26.57754 -25.43181 -23.54448 -23.23778 -22.34326 -22.20053 -21.79109 -20.81957 -19.10818 -18.56050 -18.05832 -17.72656 -17.38897 -16.54757 -16.37157 -16.06209 -15.83981 -15.68474 -15.55768 -15.26875 -14.71327 -14.52235 -14.42426 -14.39499 -14.10765 -13.97091 -13.79047 -13.55983 -13.27898 -13.19401 -13.10662 -12.80890 -12.76599 -12.59568 -12.43318 -12.09916 -12.09450 -11.90457 -11.83964 -11.64230 -11.54541 -11.51470 -11.12064 -10.84889 -10.75139 -10.16372 -9.79494 -9.60280 -8.98402 -7.90398 -5.29485 0.39338 0.52533 1.43935 1.46523 1.55007 1.63388 2.07250 2.46110 2.88745 3.10264 3.28307 3.51372 3.62671 3.67701 3.85636 3.88603 4.02307 4.09813 4.15839 4.18370 4.23111 4.25139 4.35103 4.41801 4.42763 4.54372 4.64898 4.67656 4.72046 4.78910 4.87561 4.92259 4.98541 5.04038 5.12545 5.18700 5.25464 5.32495 5.36521 5.41059 5.42898 5.48000 5.58976 5.61053 5.65210 5.68585 6.11303 6.12844 6.55181 6.83577 7.01370 7.25977 7.66164 8.29644 9.18154 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014231 B = 0.003095 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.092509 B = 9043.356121 C =10448.661906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C -0.093 4.093 4 C -0.055 4.055 5 H 0.128 0.872 6 C 0.522 3.478 7 O -0.577 6.577 8 N -0.702 5.702 9 C 0.155 3.845 10 H 0.065 0.935 11 C 0.134 3.866 12 N -0.620 5.620 13 C -0.249 4.249 14 H 0.079 0.921 15 C -0.059 4.059 16 N -0.945 5.945 17 Si 0.979 3.021 18 H -0.290 1.290 19 H -0.288 1.288 20 H -0.268 1.268 21 C 0.156 3.844 22 C 0.093 3.907 23 H 0.096 0.904 24 O -0.569 6.569 25 C -0.088 4.088 26 C -0.126 4.126 27 C -0.133 4.133 28 C -0.124 4.124 29 C -0.123 4.123 30 C -0.110 4.110 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.034 0.966 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.415 0.585 39 H 0.041 0.959 40 H 0.031 0.969 41 H 0.250 0.750 42 H 0.005 0.995 43 H 0.043 0.957 44 H 0.396 0.604 45 H 0.104 0.896 46 H 0.129 0.871 47 H 0.143 0.857 48 H 0.150 0.850 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.045 17.137 17.724 25.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.131 4.131 4 C -0.076 4.076 5 H 0.146 0.854 6 C 0.310 3.690 7 O -0.455 6.455 8 N -0.354 5.354 9 C 0.048 3.952 10 H 0.083 0.917 11 C 0.007 3.993 12 N -0.348 5.348 13 C -0.378 4.378 14 H 0.097 0.903 15 C -0.253 4.253 16 N -0.593 5.593 17 Si 0.807 3.193 18 H -0.217 1.217 19 H -0.214 1.214 20 H -0.193 1.193 21 C 0.031 3.969 22 C 0.033 3.967 23 H 0.114 0.886 24 O -0.377 6.377 25 C -0.089 4.089 26 C -0.145 4.145 27 C -0.151 4.151 28 C -0.142 4.142 29 C -0.140 4.140 30 C -0.128 4.128 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.052 0.948 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.253 0.747 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.023 0.977 43 H 0.062 0.938 44 H 0.246 0.754 45 H 0.122 0.878 46 H 0.147 0.853 47 H 0.161 0.839 48 H 0.168 0.832 49 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.888 17.352 16.721 25.356 hybrid contribution 0.785 -1.254 -1.078 1.831 sum -7.102 16.098 15.643 23.543 Atomic orbital electron populations 1.21716 0.94737 1.01930 1.02083 1.21573 0.97095 0.96300 1.01590 1.21496 0.91065 0.97598 1.02955 1.20388 0.97202 0.93776 0.96273 0.85395 1.21106 0.79805 0.77000 0.91122 1.90679 1.62758 1.61263 1.30841 1.45758 1.26443 1.50437 1.12732 1.21672 0.91956 0.92304 0.89292 0.91656 1.21886 0.92469 0.89665 0.95280 1.44551 1.03445 1.31132 1.55658 1.19415 0.93054 1.02311 1.23001 0.90336 1.25636 0.95228 1.01883 1.02532 1.70098 0.98490 1.43756 1.46939 0.85059 0.77575 0.78266 0.78428 1.21695 1.21427 1.19272 1.21732 0.87555 0.91806 0.95850 1.23128 0.89059 0.86555 0.97951 0.88611 1.86444 1.22047 1.40625 1.88595 1.19490 1.00120 0.93443 0.95826 1.21176 1.00367 0.94316 0.98613 1.21361 0.98893 0.95841 0.99009 1.21506 0.98066 1.00927 0.93656 1.21503 0.99646 0.93123 0.99776 1.21376 0.96874 0.97478 0.97091 0.93632 0.92565 0.90996 0.94754 0.90300 0.88803 0.92753 0.74750 0.94124 0.95108 0.94064 0.97668 0.93844 0.75358 0.87810 0.85300 0.83945 0.83228 0.83082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.91 71.98 0.71 -1.97 16 2 C -0.13 -2.69 5.67 30.59 0.17 -2.52 16 3 C -0.09 -1.91 4.17 30.60 0.13 -1.78 16 4 C -0.06 -1.14 2.35 -12.29 -0.03 -1.16 16 5 H 0.13 1.77 7.87 -2.39 -0.02 1.75 16 6 C 0.52 15.60 5.64 87.66 0.49 16.10 16 7 O -0.58 -22.66 15.15 -3.02 -0.05 -22.71 16 8 N -0.70 -20.20 5.23 -435.97 -2.28 -22.48 16 9 C 0.15 5.90 3.08 46.38 0.14 6.04 16 10 H 0.07 3.00 7.67 -2.38 -0.02 2.98 16 11 C 0.13 5.85 6.92 86.85 0.60 6.45 16 12 N -0.62 -32.77 3.40 -691.31 -2.35 -35.12 16 13 C -0.25 -14.35 10.26 84.03 0.86 -13.49 16 14 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 15 C -0.06 -3.39 5.45 84.86 0.46 -2.92 16 16 N -0.94 -56.05 10.50 21.65 0.23 -55.82 16 17 Si 0.98 46.24 29.56 68.60 2.03 48.26 16 18 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 19 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 21 C 0.16 7.62 5.21 86.68 0.45 8.07 16 22 C 0.09 3.37 3.95 31.79 0.13 3.50 16 23 H 0.10 2.82 8.00 -2.39 -0.02 2.80 16 24 O -0.57 -19.21 13.39 -148.98 -1.99 -21.21 16 25 C -0.09 -1.81 4.77 -19.87 -0.09 -1.90 16 26 C -0.13 -3.04 8.86 22.27 0.20 -2.84 16 27 C -0.13 -2.68 10.05 22.27 0.22 -2.45 16 28 C -0.12 -1.98 10.05 22.27 0.22 -1.75 16 29 C -0.12 -1.74 10.05 22.27 0.22 -1.52 16 30 C -0.11 -1.70 9.67 22.27 0.22 -1.48 16 31 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.03 0.95 7.41 -2.38 -0.02 0.94 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.34 16 36 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.05 1.38 7.12 -2.39 -0.02 1.37 16 38 H 0.42 8.77 8.52 -92.71 -0.79 7.98 16 39 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 42 H 0.01 0.28 7.83 -2.39 -0.02 0.27 16 43 H 0.04 2.29 7.01 -2.39 -0.02 2.27 16 44 H 0.40 9.81 9.12 -74.06 -0.68 9.14 16 45 H 0.10 2.93 7.19 -2.91 -0.02 2.91 16 46 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 47 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 48 H 0.15 1.27 8.06 -2.91 -0.02 1.24 16 49 H 0.15 1.41 7.95 -2.91 -0.02 1.39 16 Total: -1.00 -76.46 397.62 0.18 -76.27 By element: Atomic # 1 Polarization: 28.96 SS G_CDS: -0.51 Total: 28.45 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 5.11 Total: 4.35 kcal Atomic # 7 Polarization: -109.02 SS G_CDS: -4.41 Total: -113.43 kcal Atomic # 8 Polarization: -41.87 SS G_CDS: -2.04 Total: -43.91 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.26 kcal Total: -76.46 0.18 -76.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001198392626.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.579 kcal (2) G-P(sol) polarization free energy of solvation -76.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds