Wall clock time and date at job start Tue Mar 31 2020 17:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47393 * 2 1 4 4 C 1.52993 * 109.47393 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47348 * 305.00095 * 4 3 2 6 6 C 1.50697 * 109.47498 * 185.00089 * 4 3 2 7 7 O 1.21278 * 120.00162 * 240.00322 * 6 4 3 8 8 N 1.34780 * 119.99758 * 59.99750 * 6 4 3 9 9 C 1.46498 * 119.99959 * 180.02562 * 8 6 4 10 10 H 1.09005 * 110.64051 * 36.69447 * 9 8 6 11 11 C 1.54321 * 110.72380 * 273.55223 * 9 8 6 12 12 N 1.47027 * 107.26963 * 263.82875 * 11 9 8 13 13 C 1.36934 * 125.64999 * 181.01837 * 12 11 9 14 14 H 1.08001 * 119.99715 * 19.72556 * 13 12 11 15 15 C 1.38808 * 120.00167 * 199.71725 * 13 12 11 16 16 N 1.31615 * 119.99901 * 28.45315 * 15 13 12 17 17 Si 1.86798 * 119.99961 * 208.45051 * 15 13 12 18 18 H 1.48505 * 109.47216 * 180.02562 * 17 15 13 19 19 H 1.48506 * 109.47151 * 60.00278 * 17 15 13 20 20 H 1.48504 * 109.47376 * 300.00320 * 17 15 13 21 21 C 1.47424 * 108.70017 * 1.28604 * 12 11 9 22 22 C 1.55127 * 104.72584 * 335.55014 * 21 12 11 23 23 H 1.08997 * 111.19489 * 279.19793 * 22 21 12 24 24 O 1.42899 * 110.90793 * 155.27415 * 22 21 12 25 25 C 1.50707 * 109.47221 * 65.00109 * 4 3 2 26 26 C 1.38236 * 119.99609 * 59.72619 * 25 4 3 27 27 C 1.38232 * 119.99518 * 179.79004 * 26 25 4 28 28 C 1.38238 * 120.00331 * 0.44489 * 27 26 25 29 29 C 1.38234 * 119.99889 * 359.80638 * 28 27 26 30 30 C 1.38232 * 120.00085 * 240.00093 * 25 4 3 31 31 H 1.08995 * 109.47447 * 59.99754 * 1 2 3 32 32 H 1.09010 * 109.47576 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47219 * 299.99420 * 1 2 3 34 34 H 1.09002 * 109.47010 * 240.00105 * 2 1 3 35 35 H 1.08999 * 109.47229 * 120.00703 * 2 1 3 36 36 H 1.09002 * 109.46956 * 60.00072 * 3 2 1 37 37 H 1.08995 * 109.47024 * 300.00504 * 3 2 1 38 38 H 0.96992 * 120.00007 * 0.02562 * 8 6 4 39 39 H 1.08999 * 109.88249 * 144.40999 * 11 9 8 40 40 H 1.08996 * 109.88073 * 23.24309 * 11 9 8 41 41 H 0.97002 * 119.99894 * 5.65247 * 16 15 13 42 42 H 1.09004 * 110.37014 * 94.48414 * 21 12 11 43 43 H 1.09003 * 110.36481 * 216.80873 * 21 12 11 44 44 H 0.96697 * 113.99730 * 67.97664 * 24 22 21 45 45 H 1.07997 * 120.00333 * 359.97438 * 26 25 4 46 46 H 1.08005 * 120.00066 * 180.27216 * 27 26 25 47 47 H 1.08002 * 120.00434 * 179.83724 * 28 27 26 48 48 H 1.07997 * 120.00212 * 180.02562 * 29 28 27 49 49 H 1.08000 * 119.99878 * 359.97438 * 30 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0723 2.8578 0.1245 7 8 4.7699 3.3321 -0.7468 8 7 3.7462 3.5966 1.2036 9 6 4.2341 4.9727 1.3238 10 1 4.2501 5.4612 0.3494 11 6 5.6344 5.0010 1.9718 12 7 5.4459 5.2572 3.4073 13 6 6.4462 5.3768 4.3347 14 1 7.4536 5.6012 4.0165 15 6 6.1655 5.2099 5.6838 16 7 5.1743 4.4289 6.0580 17 14 7.1944 6.0936 6.9682 18 1 6.6953 5.7505 8.3241 19 1 7.0937 7.5605 6.7597 20 1 8.6128 5.6720 6.8420 21 6 4.0013 5.3575 3.6838 22 6 3.3689 5.7760 2.3306 23 1 3.4694 6.8484 2.1634 24 8 1.9989 5.3752 2.2623 25 6 4.0728 0.8418 -1.2868 26 6 3.7347 1.4183 -2.4969 27 6 4.1996 0.8699 -3.6775 28 6 4.9950 -0.2603 -3.6487 29 6 5.3288 -0.8398 -2.4389 30 6 4.8675 -0.2889 -1.2579 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5137 0.8900 34 1 1.8932 -0.5138 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6766 1.9563 -0.8899 38 1 3.1885 3.2172 1.9006 39 1 6.2320 5.7975 1.5284 40 1 6.1286 4.0402 1.8285 41 1 4.6927 3.9065 5.3977 42 1 3.6089 4.3931 4.0065 43 1 3.8121 6.1178 4.4416 44 1 1.4194 5.8499 2.8737 45 1 3.1098 2.2989 -2.5197 46 1 3.9390 1.3229 -4.6228 47 1 5.3560 -0.6903 -4.5713 48 1 5.9506 -1.7226 -2.4163 49 1 5.1284 -0.7416 -0.3127 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001220915650.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:44 Heat of formation + Delta-G solvation = -71.334360 kcal Electronic energy + Delta-G solvation = -29380.673189 eV Core-core repulsion = 25499.696649 eV Total energy + Delta-G solvation = -3880.976540 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.62210 -40.28123 -39.14962 -36.84869 -36.66973 -35.46259 -33.64507 -33.02584 -31.76954 -30.42916 -29.59284 -28.83859 -26.33365 -25.69409 -23.67513 -23.20480 -22.43240 -22.14047 -21.48628 -20.93998 -19.63182 -18.49918 -18.18168 -17.82020 -17.09825 -16.70214 -16.46682 -16.11170 -15.85102 -15.62342 -15.51606 -15.34801 -15.15135 -14.70613 -14.51739 -14.25282 -14.19251 -14.03423 -13.96596 -13.55675 -13.34489 -13.25516 -12.90423 -12.72003 -12.68835 -12.56345 -12.34780 -12.07783 -11.95174 -11.90671 -11.86574 -11.75753 -11.72591 -11.48059 -11.02046 -10.79627 -10.55999 -10.12929 -9.76508 -9.60155 -9.08498 -8.37973 -5.42229 0.44087 0.54534 1.57034 1.58078 1.63958 1.84005 2.10451 2.58515 2.90066 2.96812 3.14708 3.48246 3.49887 3.63479 3.67284 3.78279 3.96896 4.03583 4.11878 4.15628 4.18717 4.27580 4.29178 4.35751 4.38969 4.46715 4.62789 4.65777 4.72684 4.74526 4.79020 4.82964 4.89952 4.93096 5.00836 5.07258 5.11774 5.17514 5.24140 5.33600 5.43737 5.46464 5.58550 5.62251 5.63816 5.71501 6.13530 6.26122 6.50455 6.75528 6.82974 7.19044 7.62296 8.18710 8.92658 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014180 B = 0.003107 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.125568 B = 9009.717121 C = 9600.271089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.099 4.099 4 C -0.062 4.062 5 H 0.109 0.891 6 C 0.516 3.484 7 O -0.573 6.573 8 N -0.696 5.696 9 C 0.154 3.846 10 H 0.100 0.900 11 C 0.126 3.874 12 N -0.615 5.615 13 C -0.356 4.356 14 H 0.054 0.946 15 C -0.068 4.068 16 N -0.934 5.934 17 Si 1.116 2.884 18 H -0.288 1.288 19 H -0.278 1.278 20 H -0.279 1.279 21 C 0.125 3.875 22 C 0.102 3.898 23 H 0.094 0.906 24 O -0.556 6.556 25 C -0.071 4.071 26 C -0.102 4.102 27 C -0.132 4.132 28 C -0.126 4.126 29 C -0.128 4.128 30 C -0.127 4.127 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.409 0.591 39 H 0.036 0.964 40 H 0.008 0.992 41 H 0.256 0.744 42 H 0.018 0.982 43 H 0.032 0.968 44 H 0.400 0.600 45 H 0.108 0.892 46 H 0.136 0.864 47 H 0.144 0.856 48 H 0.143 0.857 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.962 -8.382 -15.316 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.137 4.137 4 C -0.083 4.083 5 H 0.127 0.873 6 C 0.304 3.696 7 O -0.452 6.452 8 N -0.346 5.346 9 C 0.048 3.952 10 H 0.118 0.882 11 C 0.000 4.000 12 N -0.343 5.343 13 C -0.484 4.484 14 H 0.072 0.928 15 C -0.266 4.266 16 N -0.575 5.575 17 Si 0.940 3.060 18 H -0.214 1.214 19 H -0.204 1.204 20 H -0.205 1.205 21 C -0.001 4.001 22 C 0.041 3.959 23 H 0.111 0.889 24 O -0.363 6.363 25 C -0.072 4.072 26 C -0.120 4.120 27 C -0.149 4.149 28 C -0.144 4.144 29 C -0.146 4.146 30 C -0.145 4.145 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.245 0.755 39 H 0.054 0.946 40 H 0.026 0.974 41 H 0.066 0.934 42 H 0.036 0.964 43 H 0.050 0.950 44 H 0.250 0.750 45 H 0.127 0.873 46 H 0.154 0.846 47 H 0.162 0.838 48 H 0.160 0.840 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.015 -8.127 -14.713 19.073 hybrid contribution -0.135 -0.013 -0.630 0.644 sum -9.151 -8.140 -15.342 19.631 Atomic orbital electron populations 1.21746 0.94816 1.02180 1.01993 1.21470 0.96581 0.94957 1.02401 1.21587 0.89916 0.99072 1.03084 1.20379 0.98683 0.91436 0.97840 0.87263 1.20978 0.79411 0.88421 0.80816 1.90671 1.39287 1.73637 1.41591 1.45657 1.52656 1.13210 1.23098 1.21765 0.91833 0.83061 0.98539 0.88238 1.21834 0.95621 0.97306 0.85289 1.44586 1.01974 1.84271 1.03484 1.19961 0.91018 1.48007 0.89408 0.92810 1.27156 1.02014 0.98729 0.98661 1.70918 1.25658 1.24397 1.36557 0.82848 0.74146 0.75576 0.73454 1.21407 1.20440 1.20463 1.22150 0.84518 0.97724 0.95751 1.23078 0.81797 0.97857 0.93172 0.88863 1.86356 1.16872 1.67571 1.65487 1.19356 0.98470 0.95876 0.93454 1.20956 0.99832 0.98649 0.92564 1.21371 0.98498 0.96826 0.98252 1.21451 0.98055 0.96029 0.98857 1.21392 1.00136 1.00835 0.92200 1.21258 0.97706 0.96093 0.99466 0.92749 0.91897 0.92462 0.92048 0.91399 0.90578 0.91557 0.75501 0.94564 0.97414 0.93407 0.96418 0.94951 0.74974 0.87348 0.84608 0.83802 0.83962 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 71.98 0.71 -1.57 16 2 C -0.12 -2.03 5.75 30.59 0.18 -1.86 16 3 C -0.10 -2.04 4.52 30.59 0.14 -1.91 16 4 C -0.06 -1.59 2.38 -12.29 -0.03 -1.62 16 5 H 0.11 2.62 7.88 -2.38 -0.02 2.60 16 6 C 0.52 17.01 7.02 87.66 0.62 17.63 16 7 O -0.57 -22.71 14.85 -3.02 -0.04 -22.76 16 8 N -0.70 -22.85 4.64 -436.91 -2.03 -24.88 16 9 C 0.15 5.54 3.14 46.18 0.14 5.68 16 10 H 0.10 3.50 7.69 -2.38 -0.02 3.48 16 11 C 0.13 5.60 6.98 86.73 0.61 6.21 16 12 N -0.61 -31.17 3.26 -691.55 -2.26 -33.42 16 13 C -0.36 -20.31 10.00 84.03 0.84 -19.47 16 14 H 0.05 3.12 7.97 -2.91 -0.02 3.09 16 15 C -0.07 -3.87 5.10 84.86 0.43 -3.44 16 16 N -0.93 -55.64 13.01 21.65 0.28 -55.36 16 17 Si 1.12 50.41 30.00 68.60 2.06 52.47 16 18 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 19 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 20 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 21 C 0.12 5.44 5.10 86.93 0.44 5.88 16 22 C 0.10 3.34 4.23 32.06 0.14 3.48 16 23 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 24 O -0.56 -14.72 12.63 -148.98 -1.88 -16.60 16 25 C -0.07 -1.84 3.37 -19.86 -0.07 -1.91 16 26 C -0.10 -2.65 7.88 22.27 0.18 -2.47 16 27 C -0.13 -2.91 10.05 22.27 0.22 -2.69 16 28 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 29 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 30 C -0.13 -2.98 9.67 22.27 0.22 -2.77 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.06 1.13 7.38 -2.39 -0.02 1.11 16 35 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.55 7.43 -2.39 -0.02 1.53 16 37 H 0.07 1.42 7.21 -2.39 -0.02 1.40 16 38 H 0.41 12.66 7.56 -92.71 -0.70 11.96 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.01 0.38 8.04 -2.39 -0.02 0.36 16 41 H 0.26 15.41 6.19 -92.71 -0.57 14.84 16 42 H 0.02 0.85 6.81 -2.39 -0.02 0.83 16 43 H 0.03 1.53 8.08 -2.39 -0.02 1.51 16 44 H 0.40 7.28 9.12 -74.06 -0.68 6.60 16 45 H 0.11 2.91 7.49 -2.91 -0.02 2.88 16 46 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 47 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 48 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 49 H 0.13 2.66 7.95 -2.91 -0.02 2.63 16 Total: -1.00 -72.53 394.71 1.11 -71.42 By element: Atomic # 1 Polarization: 34.80 SS G_CDS: -0.23 Total: 34.57 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: 5.21 Total: -5.44 kcal Atomic # 7 Polarization: -109.66 SS G_CDS: -4.00 Total: -113.66 kcal Atomic # 8 Polarization: -37.43 SS G_CDS: -1.93 Total: -39.36 kcal Atomic # 14 Polarization: 50.41 SS G_CDS: 2.06 Total: 52.47 kcal Total: -72.53 1.11 -71.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001220915650.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.085 kcal (2) G-P(sol) polarization free energy of solvation -72.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds