Wall clock time and date at job start Tue Mar 31 2020 17:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46970 * 2 1 4 4 C 1.53001 * 109.47283 * 239.99773 * 2 1 3 5 5 C 1.50703 * 109.47141 * 119.99835 * 2 1 3 6 6 O 1.21283 * 119.99922 * 359.97438 * 5 2 1 7 7 N 1.34773 * 119.99858 * 180.02562 * 5 2 1 8 8 C 1.46506 * 119.99836 * 179.97438 * 7 5 2 9 9 C 1.52995 * 109.46886 * 179.97438 * 8 7 5 10 10 N 1.46503 * 109.47173 * 179.97438 * 9 8 7 11 11 C 1.34777 * 120.00592 * 179.97438 * 10 9 8 12 12 O 1.21291 * 119.99339 * 0.02562 * 11 10 9 13 13 C 1.50692 * 120.00414 * 180.02562 * 11 10 9 14 14 H 1.09005 * 109.46777 * 60.00312 * 13 11 10 15 15 C 1.50692 * 109.47178 * 300.00482 * 13 11 10 16 16 H 1.08002 * 120.00093 * 124.62238 * 15 13 11 17 17 C 1.37878 * 119.99925 * 304.33840 * 15 13 11 18 18 N 1.31508 * 120.00110 * 6.38767 * 17 15 13 19 19 Si 1.86805 * 119.99887 * 186.38871 * 17 15 13 20 20 H 1.48502 * 109.47219 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47001 * 120.00368 * 19 17 15 22 22 H 1.48506 * 109.46992 * 240.00220 * 19 17 15 23 23 C 1.50703 * 109.47224 * 180.02562 * 13 11 10 24 24 C 1.38240 * 119.99704 * 313.11149 * 23 13 11 25 25 C 1.38241 * 119.99504 * 179.80760 * 24 23 13 26 26 C 1.38230 * 120.00041 * 0.40109 * 25 24 23 27 27 C 1.38241 * 119.99902 * 359.85802 * 26 25 24 28 28 C 1.38222 * 120.00123 * 359.95141 * 27 26 25 29 29 H 1.08997 * 109.47383 * 299.99707 * 1 2 3 30 30 H 1.08999 * 109.47215 * 60.00577 * 1 2 3 31 31 H 1.09005 * 109.46979 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47081 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46637 * 300.00048 * 3 2 1 34 34 H 1.08998 * 109.46919 * 59.99407 * 3 2 1 35 35 H 1.08993 * 109.46905 * 299.99850 * 4 2 1 36 36 H 1.08997 * 109.46728 * 60.00211 * 4 2 1 37 37 H 1.08998 * 109.46669 * 179.97438 * 4 2 1 38 38 H 0.97002 * 120.00312 * 359.97438 * 7 5 2 39 39 H 1.08995 * 109.46949 * 60.00041 * 8 7 5 40 40 H 1.08999 * 109.46855 * 299.99797 * 8 7 5 41 41 H 1.09005 * 109.47160 * 60.00343 * 9 8 7 42 42 H 1.08998 * 109.47836 * 300.00182 * 9 8 7 43 43 H 0.97002 * 119.99564 * 0.02562 * 10 9 8 44 44 H 0.96997 * 119.99941 * 179.97438 * 18 17 15 45 45 H 1.07996 * 120.00455 * 0.02562 * 24 23 13 46 46 H 1.07996 * 119.99510 * 180.22987 * 25 24 23 47 47 H 1.08003 * 119.99824 * 179.82874 * 26 25 24 48 48 H 1.08005 * 119.99490 * 179.97438 * 27 26 25 49 49 H 1.08003 * 119.99928 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 8 1.2442 -1.1709 2.0291 7 7 3.3574 -0.8330 1.4440 8 6 3.8458 -1.5232 2.6405 9 6 5.3757 -1.5232 2.6404 10 7 5.8641 -2.2128 3.8372 11 6 7.1892 -2.3363 4.0503 12 8 7.9773 -1.8761 3.2514 13 6 7.6915 -3.0461 5.2811 14 1 7.3278 -4.0737 5.2817 15 6 7.1897 -2.3348 6.5111 16 1 6.6317 -2.8783 7.2593 17 6 7.4478 -0.9916 6.6843 18 7 8.0208 -0.3027 5.7217 19 14 6.9836 -0.1502 8.2862 20 1 6.3565 -1.1380 9.2006 21 1 8.2029 0.4098 8.9226 22 1 6.0218 0.9467 8.0086 23 6 9.1985 -3.0461 5.2811 24 6 9.8897 -3.3944 4.1356 25 6 11.2721 -3.3906 4.1345 26 6 11.9632 -3.0464 5.2811 27 6 11.2720 -2.7033 6.4280 28 6 9.8898 -2.7033 6.4280 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6765 1.9564 0.8899 35 1 1.6768 -1.7489 -1.2491 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2493 38 1 3.9878 -0.4644 0.8055 39 1 3.4827 -2.5509 2.6408 40 1 3.4821 -1.0091 3.5302 41 1 5.7391 -0.4955 2.6400 42 1 5.7391 -2.0374 1.7507 43 1 5.2338 -2.5811 4.4759 44 1 8.2021 0.6424 5.8434 45 1 9.3497 -3.6662 3.2407 46 1 11.8120 -3.6591 3.2386 47 1 13.0433 -3.0461 5.2810 48 1 11.8121 -2.4348 7.3240 49 1 9.3498 -2.4348 7.3240 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265562570.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:09:50 Heat of formation + Delta-G solvation = -85.620337 kcal Electronic energy + Delta-G solvation = -28569.975027 eV Core-core repulsion = 24688.379001 eV Total energy + Delta-G solvation = -3881.596026 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.25045 -40.67234 -39.15265 -36.95789 -36.53664 -35.46344 -34.61918 -32.65849 -31.36996 -30.31434 -28.72796 -28.22639 -27.95390 -25.88848 -24.54047 -23.11958 -22.92793 -22.19956 -20.94145 -20.39271 -18.70013 -17.88498 -17.46715 -17.22459 -17.02139 -16.75541 -16.61318 -16.28471 -15.84880 -15.46446 -15.34193 -15.13167 -14.85445 -14.69185 -14.42687 -14.16367 -14.00077 -13.78857 -13.63377 -13.31755 -13.08226 -13.03196 -12.94588 -12.80646 -12.73731 -12.73138 -12.63225 -12.48803 -12.27128 -11.91326 -11.85996 -11.75714 -11.43236 -11.17236 -10.80435 -10.68239 -10.20366 -10.13460 -9.67128 -9.39009 -9.11035 -8.10301 -6.26263 0.86834 0.91365 1.38660 1.45756 1.52997 1.58364 1.94586 2.34084 2.49429 2.94843 3.18988 3.35666 3.59385 3.72188 3.85740 3.91550 4.05388 4.26393 4.33787 4.36288 4.40179 4.49778 4.63925 4.70370 4.71931 4.74207 4.82237 4.87322 4.91298 4.94485 4.95026 5.00842 5.01106 5.10000 5.15911 5.21245 5.30078 5.32984 5.37116 5.45268 5.53426 5.70844 5.87418 5.90405 5.95735 5.98502 6.41510 6.45922 6.52265 6.75790 7.06851 7.17064 7.42203 7.93938 8.90350 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015129 B = 0.002785 C = 0.002495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.364128 B =10050.299112 C =11221.923037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.082 4.082 3 C -0.140 4.140 4 C -0.138 4.138 5 C 0.516 3.484 6 O -0.585 6.585 7 N -0.714 5.714 8 C 0.123 3.877 9 C 0.129 3.871 10 N -0.727 5.727 11 C 0.555 3.445 12 O -0.581 6.581 13 C 0.046 3.954 14 H 0.069 0.931 15 C -0.535 4.535 16 H 0.070 0.930 17 C 0.045 3.955 18 N -0.872 5.872 19 Si 0.935 3.065 20 H -0.260 1.260 21 H -0.286 1.286 22 H -0.290 1.290 23 C -0.039 4.039 24 C -0.116 4.116 25 C -0.145 4.145 26 C -0.141 4.141 27 C -0.151 4.151 28 C -0.097 4.097 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.414 0.586 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.405 0.595 44 H 0.256 0.744 45 H 0.102 0.898 46 H 0.131 0.869 47 H 0.139 0.861 48 H 0.127 0.873 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.479 -0.247 -11.797 13.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.085 4.085 3 C -0.198 4.198 4 C -0.196 4.196 5 C 0.304 3.696 6 O -0.464 6.464 7 N -0.367 5.367 8 C -0.001 4.001 9 C 0.004 3.996 10 N -0.380 5.380 11 C 0.345 3.655 12 O -0.460 6.460 13 C 0.025 3.975 14 H 0.087 0.913 15 C -0.572 4.572 16 H 0.088 0.912 17 C -0.160 4.160 18 N -0.507 5.507 19 Si 0.761 3.239 20 H -0.184 1.184 21 H -0.212 1.212 22 H -0.217 1.217 23 C -0.040 4.040 24 C -0.134 4.134 25 C -0.162 4.162 26 C -0.159 4.159 27 C -0.169 4.169 28 C -0.115 4.115 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.109 0.891 37 H 0.088 0.912 38 H 0.251 0.749 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.239 0.761 44 H 0.065 0.935 45 H 0.120 0.880 46 H 0.149 0.851 47 H 0.157 0.843 48 H 0.145 0.855 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.392 -0.061 -11.854 13.971 hybrid contribution -0.234 0.899 1.189 1.509 sum -7.626 0.838 -10.666 13.138 Atomic orbital electron populations 1.21671 0.91984 1.02195 1.02536 1.20878 0.98026 0.97098 0.92506 1.21906 1.01830 0.92560 1.03485 1.21891 1.01899 1.00183 0.95606 1.21332 0.81600 0.78742 0.87917 1.90678 1.56348 1.50564 1.48844 1.45789 1.07472 1.58407 1.25024 1.21221 0.92378 0.98089 0.88440 1.21066 0.92140 0.97203 0.89157 1.45513 1.07464 1.60119 1.24921 1.20908 0.81154 0.77913 0.85558 1.90494 1.56144 1.50522 1.48872 1.17994 0.90358 0.96203 0.92936 0.91278 1.20925 1.37236 0.94165 1.04905 0.91156 1.25507 0.94308 0.97994 0.98163 1.70175 1.40519 1.07845 1.32153 0.85859 0.77665 0.78790 0.81554 1.18397 1.21202 1.21677 1.19980 0.96114 0.94912 0.93000 1.21063 0.94684 1.00557 0.97118 1.21224 0.93934 1.02278 0.98814 1.21202 1.00163 1.01520 0.93037 1.21327 0.94270 1.02224 0.99084 1.21179 0.93759 0.97612 0.98915 0.93583 0.89291 0.93193 0.91336 0.88931 0.93262 0.92746 0.89054 0.91177 0.74914 0.90632 0.92269 0.93662 0.91356 0.76064 0.93469 0.87958 0.85088 0.84342 0.85538 0.86955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 7.76 71.98 0.56 -1.59 16 2 C -0.08 -1.37 0.87 -52.92 -0.05 -1.42 16 3 C -0.14 -1.89 8.37 71.98 0.60 -1.29 16 4 C -0.14 -1.67 8.37 71.98 0.60 -1.07 16 5 C 0.52 12.91 6.48 87.66 0.57 13.48 16 6 O -0.58 -19.79 15.98 -3.04 -0.05 -19.84 16 7 N -0.71 -16.28 5.34 -463.06 -2.47 -18.75 16 8 C 0.12 3.37 5.79 86.38 0.50 3.87 16 9 C 0.13 4.13 5.79 86.38 0.50 4.63 16 10 N -0.73 -27.83 5.46 -463.06 -2.53 -30.35 16 11 C 0.56 25.79 5.28 87.65 0.46 26.25 16 12 O -0.58 -30.45 13.86 -3.06 -0.04 -30.49 16 13 C 0.05 2.16 2.78 -13.04 -0.04 2.12 16 14 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 15 C -0.53 -25.79 7.11 25.60 0.18 -25.61 16 16 H 0.07 3.29 7.82 -2.91 -0.02 3.27 16 17 C 0.04 2.25 3.90 84.66 0.33 2.58 16 18 N -0.87 -47.57 11.11 21.45 0.24 -47.33 16 19 Si 0.93 40.73 29.54 68.60 2.03 42.76 16 20 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 21 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 23 C -0.04 -1.85 4.63 -19.86 -0.09 -1.94 16 24 C -0.12 -5.15 8.21 22.27 0.18 -4.96 16 25 C -0.14 -5.56 10.05 22.27 0.22 -5.33 16 26 C -0.14 -5.13 10.05 22.27 0.22 -4.90 16 27 C -0.15 -6.00 10.05 22.27 0.22 -5.77 16 28 C -0.10 -4.45 8.46 22.26 0.19 -4.26 16 29 H 0.04 0.93 8.10 -2.39 -0.02 0.91 16 30 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 0.97 8.10 -2.38 -0.02 0.95 16 32 H 0.07 0.84 7.56 -2.39 -0.02 0.82 16 33 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.07 0.74 7.57 -2.39 -0.02 0.72 16 38 H 0.41 7.33 7.31 -92.71 -0.68 6.66 16 39 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 42 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.40 14.19 8.36 -92.71 -0.77 13.42 16 44 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 45 H 0.10 4.55 6.98 -2.91 -0.02 4.53 16 46 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 47 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 48 H 0.13 4.28 8.06 -2.91 -0.02 4.26 16 49 H 0.11 5.39 6.05 -2.91 -0.02 5.37 16 Total: -1.00 -68.75 398.30 1.85 -66.91 By element: Atomic # 1 Polarization: 42.82 SS G_CDS: -0.50 Total: 42.32 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 5.17 Total: -5.22 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -4.76 Total: -96.43 kcal Atomic # 8 Polarization: -50.24 SS G_CDS: -0.09 Total: -50.33 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -68.75 1.85 -66.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265562570.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.713 kcal (2) G-P(sol) polarization free energy of solvation -68.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds