Wall clock time and date at job start Tue Mar 31 2020 17:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46693 * 2 1 4 4 C 1.53001 * 109.47217 * 119.99755 * 2 1 3 5 5 H 1.08994 * 109.46887 * 185.00657 * 4 2 1 6 6 C 1.52999 * 109.47200 * 65.00337 * 4 2 1 7 7 N 1.46497 * 109.46992 * 184.99961 * 6 4 2 8 8 C 1.34777 * 119.99525 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 7 6 11 11 C 1.50703 * 109.47148 * 180.28037 * 10 8 7 12 12 C 1.38262 * 119.97664 * 269.71970 * 11 10 8 13 13 C 1.38297 * 120.04385 * 179.78032 * 12 11 10 14 14 C 1.37975 * 119.91351 * 0.48023 * 13 12 11 15 15 C 1.38600 * 120.03877 * 359.77945 * 14 13 12 16 16 C 1.37966 * 120.04254 * 359.97438 * 15 14 13 17 17 C 1.51081 * 107.26823 * 179.97438 * 15 14 13 18 18 O 1.43945 * 105.96183 * 17.68371 * 17 15 14 19 19 C 1.43950 * 104.94582 * 331.55758 * 18 17 15 20 20 N 1.46501 * 109.47053 * 305.00321 * 4 2 1 21 21 C 1.36938 * 120.00226 * 275.00057 * 20 4 2 22 22 H 1.08003 * 119.99566 * 359.97438 * 21 20 4 23 23 C 1.38807 * 120.00578 * 180.02562 * 21 20 4 24 24 N 1.31630 * 119.99516 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00700 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47139 * 89.99661 * 25 23 21 27 27 H 1.48497 * 109.47830 * 210.00357 * 25 23 21 28 28 H 1.48509 * 109.46944 * 330.00365 * 25 23 21 29 29 H 1.09002 * 109.47184 * 300.00047 * 1 2 3 30 30 H 1.08992 * 109.46834 * 60.00280 * 1 2 3 31 31 H 1.08997 * 109.46438 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47567 * 239.99995 * 2 1 3 33 33 H 1.09002 * 109.47344 * 60.00051 * 3 2 1 34 34 H 1.09003 * 109.47104 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47466 * 300.00008 * 3 2 1 36 36 H 1.08995 * 109.46838 * 64.99849 * 6 4 2 37 37 H 1.09001 * 109.46617 * 305.00184 * 6 4 2 38 38 H 0.97000 * 120.00580 * 0.02562 * 7 6 4 39 39 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 40 40 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 41 41 H 1.08003 * 119.98068 * 0.02562 * 12 11 10 42 42 H 1.07996 * 120.04431 * 180.24978 * 13 12 11 43 43 H 1.07997 * 120.04070 * 180.02562 * 16 15 14 44 44 H 1.08998 * 110.15725 * 136.80865 * 17 15 14 45 45 H 1.09007 * 110.15385 * 258.56319 * 17 15 14 46 46 H 1.08997 * 110.15312 * 147.56288 * 19 18 17 47 47 H 1.09000 * 110.15326 * 269.24608 * 19 18 17 48 48 H 0.96996 * 119.99960 * 95.00040 * 20 4 2 49 49 H 0.97001 * 119.99721 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 3.1263 -0.6441 1.2952 6 6 1.6354 -2.1954 1.1880 7 7 2.0186 -2.8592 2.4365 8 6 1.7590 -4.1704 2.6097 9 8 1.2086 -4.8008 1.7319 10 6 2.1587 -4.8547 3.8915 11 6 1.7645 -6.3079 3.8292 12 6 0.5203 -6.7062 4.2818 13 6 0.1554 -8.0388 4.2211 14 6 1.0384 -8.9717 3.7175 15 6 2.2877 -8.5731 3.2688 16 6 2.6497 -7.2430 3.3247 17 6 3.0068 -9.8110 2.7860 18 8 1.9884 -10.8093 2.5901 19 6 0.9488 -10.4676 3.5252 20 7 1.4559 -0.1036 2.4424 21 6 2.0440 1.0003 2.9997 22 1 2.9389 1.4154 2.5599 23 6 1.4909 1.5853 4.1305 24 7 0.4006 1.0790 4.6668 25 14 2.2936 3.0907 4.8912 26 1 1.7223 4.3180 4.2807 27 1 2.0396 3.1012 6.3542 28 1 3.7572 3.0497 4.6432 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8935 -0.5138 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 2.1410 -2.6764 0.3508 37 1 0.5565 -2.2706 1.0528 38 1 2.4584 -2.3550 3.1388 39 1 3.2378 -4.7763 4.0241 40 1 1.6538 -4.3770 4.7312 41 1 -0.1687 -5.9757 4.6793 42 1 -0.8180 -8.3494 4.5708 43 1 3.6230 -6.9324 2.9747 44 1 3.5175 -9.6058 1.8451 45 1 3.7222 -10.1467 3.5368 46 1 -0.0259 -10.7361 3.1178 47 1 1.1132 -10.9797 4.4732 48 1 0.6524 -0.4766 2.8376 49 1 0.0142 1.4875 5.4572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319958250.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:37 Heat of formation + Delta-G solvation = -49.843882 kcal Electronic energy + Delta-G solvation = -28200.857766 eV Core-core repulsion = 24320.813123 eV Total energy + Delta-G solvation = -3880.044643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.86258 -39.47878 -37.75495 -37.10969 -33.83729 -32.95751 -32.88080 -31.64288 -30.29736 -29.26691 -28.03874 -27.03078 -26.33677 -24.45609 -23.62619 -22.21858 -21.88919 -21.05140 -19.98065 -18.76008 -17.40401 -16.82269 -16.66260 -16.58369 -16.34002 -15.85644 -15.33946 -15.06218 -14.59031 -14.37993 -14.29531 -13.97526 -13.67030 -13.44026 -13.32393 -13.15725 -13.02453 -12.75869 -12.72259 -12.26333 -12.19426 -12.00337 -11.68977 -11.49171 -11.33366 -11.02520 -10.99742 -10.98100 -10.84397 -10.56036 -10.31078 -10.27878 -10.16356 -9.93522 -9.61585 -9.49352 -8.97852 -8.94554 -8.60883 -8.56244 -7.06194 -5.85940 -3.14582 1.07846 1.23186 2.93607 3.34559 3.36531 3.42338 3.43883 3.69139 3.78399 4.01528 4.42698 4.50521 4.65725 4.77234 5.03328 5.08961 5.13979 5.18600 5.24664 5.31820 5.32997 5.38216 5.40944 5.49779 5.51034 5.51890 5.71539 5.76927 5.82934 5.88242 5.93192 6.09946 6.11596 6.18732 6.21809 6.32083 6.41123 6.44013 6.50584 6.53082 6.62962 6.68949 6.79960 6.80584 6.93643 7.05488 7.27246 7.62829 7.92835 8.31611 8.57049 9.43839 9.98684 10.34992 11.35824 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016991 B = 0.002399 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.499308 B =11671.102820 C =12556.471411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 C -0.142 4.142 4 C 0.168 3.832 5 H 0.053 0.947 6 C 0.113 3.887 7 N -0.712 5.712 8 C 0.511 3.489 9 O -0.547 6.547 10 C -0.106 4.106 11 C -0.050 4.050 12 C -0.098 4.098 13 C -0.091 4.091 14 C -0.139 4.139 15 C -0.134 4.134 16 C -0.079 4.079 17 C 0.093 3.907 18 O -0.363 6.363 19 C 0.093 3.907 20 N -0.717 5.717 21 C -0.235 4.235 22 H 0.072 0.928 23 C -0.011 4.011 24 N -0.930 5.930 25 Si 0.902 3.098 26 H -0.291 1.291 27 H -0.293 1.293 28 H -0.283 1.283 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.039 0.961 35 H 0.032 0.968 36 H 0.060 0.940 37 H 0.067 0.933 38 H 0.410 0.590 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.129 0.871 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.096 0.904 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.075 0.925 48 H 0.385 0.615 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.794 -17.163 -1.402 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.057 3.943 5 H 0.071 0.929 6 C -0.011 4.011 7 N -0.364 5.364 8 C 0.297 3.703 9 O -0.425 6.425 10 C -0.146 4.146 11 C -0.050 4.050 12 C -0.116 4.116 13 C -0.109 4.109 14 C -0.139 4.139 15 C -0.134 4.134 16 C -0.097 4.097 17 C 0.016 3.984 18 O -0.282 6.282 19 C 0.016 3.984 20 N -0.359 5.359 21 C -0.366 4.366 22 H 0.090 0.910 23 C -0.207 4.207 24 N -0.578 5.578 25 Si 0.733 3.267 26 H -0.218 1.218 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.247 0.753 39 H 0.121 0.879 40 H 0.126 0.874 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.114 0.886 45 H 0.094 0.906 46 H 0.113 0.887 47 H 0.093 0.907 48 H 0.220 0.780 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.522 -17.642 -2.121 18.114 hybrid contribution 0.250 1.407 1.015 1.752 sum 3.772 -16.235 -1.106 16.704 Atomic orbital electron populations 1.21769 0.95689 1.00613 1.01696 1.21616 0.96195 0.97152 0.97965 1.21843 0.99527 0.96398 1.02132 1.20546 0.96823 0.88468 0.88434 0.92920 1.21715 1.00523 0.93392 0.85512 1.45986 1.61006 1.09294 1.20102 1.20364 0.79194 0.82252 0.88530 1.90699 1.42712 1.65027 1.44079 1.20700 1.03853 0.92209 0.97800 1.19283 0.94205 0.93820 0.97695 1.21029 0.95727 0.95611 0.99278 1.20315 0.98799 0.92095 0.99706 1.20974 0.95680 0.96025 1.01265 1.20912 0.96072 0.95021 1.01425 1.20174 0.99867 0.90674 0.98979 1.21723 0.90577 0.84413 1.01648 1.89071 1.30009 1.49303 1.59819 1.21715 0.92756 0.90266 0.93619 1.42420 1.31902 1.33142 1.28449 1.19194 1.07042 1.03853 1.06558 0.90966 1.24710 0.97840 0.99484 0.98667 1.69660 1.21974 1.42238 1.23884 0.86280 0.78618 0.83299 0.78504 1.21809 1.21910 1.20830 0.90978 0.94433 0.93816 0.93295 0.89585 0.94164 0.94855 0.92124 0.91527 0.75340 0.87926 0.87421 0.85310 0.85721 0.85874 0.88562 0.90635 0.88655 0.90692 0.78045 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.74 37.16 0.32 -2.07 16 2 C -0.11 -1.80 2.74 -90.61 -0.25 -2.05 16 3 C -0.14 -2.46 8.46 37.16 0.31 -2.14 16 4 C 0.17 2.96 2.29 -67.93 -0.16 2.81 16 5 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 6 C 0.11 1.86 5.10 -4.04 -0.02 1.84 16 7 N -0.71 -11.12 5.39 -60.30 -0.32 -11.45 16 8 C 0.51 7.94 7.82 -10.98 -0.09 7.86 16 9 O -0.55 -10.42 16.03 5.55 0.09 -10.34 16 10 C -0.11 -1.25 5.83 -29.03 -0.17 -1.42 16 11 C -0.05 -0.62 4.38 -104.59 -0.46 -1.08 16 12 C -0.10 -1.20 9.70 -39.55 -0.38 -1.58 16 13 C -0.09 -1.02 10.04 -39.66 -0.40 -1.41 16 14 C -0.14 -1.58 6.32 -104.40 -0.66 -2.24 16 15 C -0.13 -1.57 6.32 -104.40 -0.66 -2.23 16 16 C -0.08 -0.94 9.70 -39.66 -0.38 -1.33 16 17 C 0.09 0.91 7.63 36.19 0.28 1.19 16 18 O -0.36 -4.15 11.72 -35.23 -0.41 -4.56 16 19 C 0.09 0.88 7.63 36.19 0.28 1.16 16 20 N -0.72 -15.39 3.53 -53.43 -0.19 -15.58 16 21 C -0.24 -5.70 7.75 -15.06 -0.12 -5.82 16 22 H 0.07 1.73 7.32 -52.48 -0.38 1.34 16 23 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 24 N -0.93 -25.80 13.06 55.49 0.72 -25.08 16 25 Si 0.90 20.94 29.55 -169.99 -5.02 15.91 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 29 H 0.07 1.44 7.47 -51.93 -0.39 1.05 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.04 0.71 6.46 -51.93 -0.34 0.37 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 1.76 5.99 -51.93 -0.31 1.45 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.19 6.34 -51.93 -0.33 0.86 16 38 H 0.41 6.36 8.14 -40.82 -0.33 6.03 16 39 H 0.10 0.98 8.09 -51.92 -0.42 0.56 16 40 H 0.11 1.16 8.08 -51.93 -0.42 0.74 16 41 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 42 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 43 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 44 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.08 0.60 8.14 -51.92 -0.42 0.18 16 46 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.39 9.13 7.80 -40.82 -0.32 8.81 16 49 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 396.10 15.07 5.97 5.97 Total: -1.00 -30.00 396.10 -9.68 -39.68 By element: Atomic # 1 Polarization: 22.19 SS G_CDS: -7.87 Total: 14.32 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -2.65 Total: -8.88 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.21 Total: -52.10 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.32 Total: -14.90 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.00 -9.68 -39.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319958250.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.164 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds