Wall clock time and date at job start Tue Mar 31 2020 17:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.46693 * 2 1 4 4 C 1.53001 * 109.47217 * 119.99755 * 2 1 3 5 5 H 1.08994 * 109.46887 * 185.00657 * 4 2 1 6 6 C 1.52999 * 109.47200 * 65.00337 * 4 2 1 7 7 N 1.46497 * 109.46992 * 184.99961 * 6 4 2 8 8 C 1.34777 * 119.99525 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00463 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99675 * 179.72583 * 8 7 6 11 11 C 1.50703 * 109.47148 * 180.28037 * 10 8 7 12 12 C 1.38262 * 119.97664 * 269.71970 * 11 10 8 13 13 C 1.38297 * 120.04385 * 179.78032 * 12 11 10 14 14 C 1.37975 * 119.91351 * 0.48023 * 13 12 11 15 15 C 1.38600 * 120.03877 * 359.77945 * 14 13 12 16 16 C 1.37966 * 120.04254 * 359.97438 * 15 14 13 17 17 C 1.51081 * 107.26823 * 179.97438 * 15 14 13 18 18 O 1.43945 * 105.96183 * 17.68371 * 17 15 14 19 19 C 1.43950 * 104.94582 * 331.55758 * 18 17 15 20 20 N 1.46501 * 109.47053 * 305.00321 * 4 2 1 21 21 C 1.36938 * 120.00226 * 275.00057 * 20 4 2 22 22 H 1.08003 * 119.99566 * 359.97438 * 21 20 4 23 23 C 1.38807 * 120.00578 * 180.02562 * 21 20 4 24 24 N 1.31630 * 119.99516 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00700 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47139 * 89.99661 * 25 23 21 27 27 H 1.48497 * 109.47830 * 210.00357 * 25 23 21 28 28 H 1.48509 * 109.46944 * 330.00365 * 25 23 21 29 29 H 1.09002 * 109.47184 * 300.00047 * 1 2 3 30 30 H 1.08992 * 109.46834 * 60.00280 * 1 2 3 31 31 H 1.08997 * 109.46438 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47567 * 239.99995 * 2 1 3 33 33 H 1.09002 * 109.47344 * 60.00051 * 3 2 1 34 34 H 1.09003 * 109.47104 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47466 * 300.00008 * 3 2 1 36 36 H 1.08995 * 109.46838 * 64.99849 * 6 4 2 37 37 H 1.09001 * 109.46617 * 305.00184 * 6 4 2 38 38 H 0.97000 * 120.00580 * 0.02562 * 7 6 4 39 39 H 1.09009 * 109.47352 * 300.27556 * 10 8 7 40 40 H 1.08998 * 109.47585 * 60.27844 * 10 8 7 41 41 H 1.08003 * 119.98068 * 0.02562 * 12 11 10 42 42 H 1.07996 * 120.04431 * 180.24978 * 13 12 11 43 43 H 1.07997 * 120.04070 * 180.02562 * 16 15 14 44 44 H 1.08998 * 110.15725 * 136.80865 * 17 15 14 45 45 H 1.09007 * 110.15385 * 258.56319 * 17 15 14 46 46 H 1.08997 * 110.15312 * 147.56288 * 19 18 17 47 47 H 1.09000 * 110.15326 * 269.24608 * 19 18 17 48 48 H 0.96996 * 119.99960 * 95.00040 * 20 4 2 49 49 H 0.97001 * 119.99721 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 3.1263 -0.6441 1.2952 6 6 1.6354 -2.1954 1.1880 7 7 2.0186 -2.8592 2.4365 8 6 1.7590 -4.1704 2.6097 9 8 1.2086 -4.8008 1.7319 10 6 2.1587 -4.8547 3.8915 11 6 1.7645 -6.3079 3.8292 12 6 0.5203 -6.7062 4.2818 13 6 0.1554 -8.0388 4.2211 14 6 1.0384 -8.9717 3.7175 15 6 2.2877 -8.5731 3.2688 16 6 2.6497 -7.2430 3.3247 17 6 3.0068 -9.8110 2.7860 18 8 1.9884 -10.8093 2.5901 19 6 0.9488 -10.4676 3.5252 20 7 1.4559 -0.1036 2.4424 21 6 2.0440 1.0003 2.9997 22 1 2.9389 1.4154 2.5599 23 6 1.4909 1.5853 4.1305 24 7 0.4006 1.0790 4.6668 25 14 2.2936 3.0907 4.8912 26 1 1.7223 4.3180 4.2807 27 1 2.0396 3.1012 6.3542 28 1 3.7572 3.0497 4.6432 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8935 -0.5138 -0.8899 33 1 1.6766 1.9564 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 2.1410 -2.6764 0.3508 37 1 0.5565 -2.2706 1.0528 38 1 2.4584 -2.3550 3.1388 39 1 3.2378 -4.7763 4.0241 40 1 1.6538 -4.3770 4.7312 41 1 -0.1687 -5.9757 4.6793 42 1 -0.8180 -8.3494 4.5708 43 1 3.6230 -6.9324 2.9747 44 1 3.5175 -9.6058 1.8451 45 1 3.7222 -10.1467 3.5368 46 1 -0.0259 -10.7361 3.1178 47 1 1.1132 -10.9797 4.4732 48 1 0.6524 -0.4766 2.8376 49 1 0.0142 1.4875 5.4572 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319958250.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:36 Heat of formation + Delta-G solvation = -67.753746 kcal Electronic energy + Delta-G solvation = -28201.634396 eV Core-core repulsion = 24320.813123 eV Total energy + Delta-G solvation = -3880.821273 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.70229 -40.69687 -38.96040 -38.26492 -35.21824 -34.71316 -33.81892 -32.47143 -31.95699 -30.37983 -29.18913 -28.07002 -27.72030 -25.66792 -25.07580 -23.58721 -22.69052 -22.07890 -21.17116 -20.18577 -19.19792 -17.96012 -17.65212 -17.39570 -17.28405 -16.91203 -16.70289 -16.36569 -15.91566 -15.72356 -15.29175 -15.22269 -14.96068 -14.83082 -14.53513 -14.46355 -14.04605 -13.79724 -13.69508 -13.46832 -13.45385 -12.90898 -12.89084 -12.86030 -12.75825 -12.66015 -12.42021 -12.32832 -12.12553 -11.92433 -11.89500 -11.82054 -11.37165 -11.17635 -11.10340 -10.92035 -10.75162 -9.93851 -9.81366 -9.42224 -8.90932 -7.84038 -5.09562 0.19660 0.36755 1.50964 1.53573 1.59268 1.71365 2.28696 2.62271 2.76688 2.95040 3.19962 3.50015 3.64680 3.74884 3.91798 3.96778 3.97588 4.08223 4.25449 4.29512 4.36866 4.39088 4.42506 4.44899 4.46652 4.53164 4.60191 4.62868 4.70312 4.75323 4.79413 4.94285 4.95706 5.00607 5.09451 5.13648 5.23149 5.30034 5.32234 5.32453 5.34812 5.56385 5.58756 5.60598 5.66888 5.70652 5.81679 5.95523 6.36434 6.66890 7.32598 7.45094 8.17034 8.42465 9.38728 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.016991 B = 0.002399 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.499308 B =11671.102820 C =12556.471411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.106 4.106 3 C -0.138 4.138 4 C 0.170 3.830 5 H 0.058 0.942 6 C 0.121 3.879 7 N -0.711 5.711 8 C 0.511 3.489 9 O -0.584 6.584 10 C -0.098 4.098 11 C -0.066 4.066 12 C -0.116 4.116 13 C -0.098 4.098 14 C -0.150 4.150 15 C -0.148 4.148 16 C -0.090 4.090 17 C 0.092 3.908 18 O -0.383 6.383 19 C 0.092 3.908 20 N -0.719 5.719 21 C -0.210 4.210 22 H 0.078 0.922 23 C -0.070 4.070 24 N -0.966 5.966 25 Si 0.954 3.046 26 H -0.298 1.298 27 H -0.304 1.304 28 H -0.270 1.270 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.050 0.950 36 H 0.073 0.927 37 H 0.051 0.949 38 H 0.412 0.588 39 H 0.129 0.871 40 H 0.118 0.882 41 H 0.133 0.867 42 H 0.146 0.854 43 H 0.136 0.864 44 H 0.104 0.896 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.096 0.904 48 H 0.373 0.627 49 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.175 -18.070 -2.202 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.127 4.127 3 C -0.195 4.195 4 C 0.061 3.939 5 H 0.076 0.924 6 C -0.003 4.003 7 N -0.362 5.362 8 C 0.299 3.701 9 O -0.465 6.465 10 C -0.137 4.137 11 C -0.067 4.067 12 C -0.134 4.134 13 C -0.116 4.116 14 C -0.150 4.150 15 C -0.148 4.148 16 C -0.108 4.108 17 C 0.016 3.984 18 O -0.302 6.302 19 C 0.016 3.984 20 N -0.359 5.359 21 C -0.342 4.342 22 H 0.096 0.904 23 C -0.263 4.263 24 N -0.618 5.618 25 Si 0.786 3.214 26 H -0.226 1.226 27 H -0.231 1.231 28 H -0.195 1.195 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.248 0.752 39 H 0.147 0.853 40 H 0.136 0.864 41 H 0.151 0.849 42 H 0.164 0.836 43 H 0.154 0.846 44 H 0.122 0.878 45 H 0.114 0.886 46 H 0.125 0.875 47 H 0.113 0.887 48 H 0.206 0.794 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.950 -18.547 -2.951 19.421 hybrid contribution -0.171 1.634 1.148 2.004 sum 4.779 -16.913 -1.803 17.668 Atomic orbital electron populations 1.21682 0.96009 1.00636 1.00760 1.21597 0.95845 0.96989 0.98307 1.21766 1.00062 0.96408 1.01261 1.20671 0.96739 0.89033 0.87421 0.92417 1.21568 0.99704 0.92630 0.86444 1.45990 1.60865 1.09511 1.19841 1.20952 0.78108 0.81856 0.89233 1.90678 1.44400 1.65706 1.45685 1.20701 1.05537 0.91640 0.95821 1.19437 0.94662 0.94148 0.98435 1.21252 0.95964 0.96382 0.99811 1.20589 0.99773 0.91770 0.99421 1.21313 0.95657 0.97158 1.00901 1.21234 0.96661 0.95522 1.01372 1.20391 1.00491 0.90907 0.99035 1.21860 0.90451 0.83446 1.02631 1.89043 1.30765 1.49778 1.60597 1.21879 0.92962 0.89191 0.94373 1.42481 1.31370 1.32586 1.29505 1.19457 1.06133 1.03367 1.05223 0.90372 1.25280 0.98838 1.02092 1.00061 1.69796 1.23770 1.43746 1.24454 0.85416 0.78441 0.80607 0.76946 1.22615 1.23107 1.19503 0.94453 0.92740 0.93359 0.90493 0.93087 0.93234 0.93078 0.90923 0.93023 0.75156 0.85335 0.86431 0.84945 0.83636 0.84579 0.87838 0.88625 0.87506 0.88665 0.79436 0.94556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 8.74 71.98 0.63 -3.77 16 2 C -0.11 -3.32 2.74 -10.79 -0.03 -3.35 16 3 C -0.14 -4.49 8.46 71.98 0.61 -3.88 16 4 C 0.17 5.77 2.29 44.99 0.10 5.87 16 5 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 6 C 0.12 3.85 5.10 86.38 0.44 4.29 16 7 N -0.71 -21.57 5.39 -463.07 -2.49 -24.06 16 8 C 0.51 15.52 7.82 87.66 0.69 16.20 16 9 O -0.58 -22.09 16.03 -3.04 -0.05 -22.14 16 10 C -0.10 -2.20 5.83 29.10 0.17 -2.04 16 11 C -0.07 -1.62 4.38 -19.84 -0.09 -1.70 16 12 C -0.12 -2.78 9.70 22.29 0.22 -2.56 16 13 C -0.10 -2.09 10.04 22.22 0.22 -1.87 16 14 C -0.15 -3.24 6.32 -19.72 -0.12 -3.37 16 15 C -0.15 -3.29 6.32 -19.72 -0.12 -3.41 16 16 C -0.09 -2.07 9.70 22.22 0.22 -1.86 16 17 C 0.09 1.67 7.63 71.36 0.54 2.22 16 18 O -0.38 -8.18 11.72 -148.98 -1.75 -9.92 16 19 C 0.09 1.60 7.63 71.36 0.54 2.14 16 20 N -0.72 -30.67 3.53 -322.94 -1.14 -31.81 16 21 C -0.21 -10.07 7.75 84.03 0.65 -9.41 16 22 H 0.08 3.63 7.32 -2.91 -0.02 3.61 16 23 C -0.07 -3.68 5.50 84.86 0.47 -3.22 16 24 N -0.97 -54.78 13.06 21.65 0.28 -54.50 16 25 Si 0.95 43.36 29.55 68.60 2.03 45.39 16 26 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 28 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 29 H 0.04 1.48 7.47 -2.39 -0.02 1.46 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.05 1.52 6.46 -2.39 -0.02 1.51 16 32 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.05 2.03 5.99 -2.39 -0.01 2.01 16 34 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.05 1.82 6.34 -2.39 -0.02 1.80 16 38 H 0.41 12.36 8.14 -92.71 -0.75 11.61 16 39 H 0.13 2.19 8.09 -2.38 -0.02 2.17 16 40 H 0.12 2.42 8.08 -2.39 -0.02 2.40 16 41 H 0.13 2.92 8.06 -2.91 -0.02 2.89 16 42 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 43 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 44 H 0.10 1.68 8.14 -2.39 -0.02 1.67 16 45 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.37 17.91 7.80 -92.71 -0.72 17.19 16 49 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -64.65 396.10 1.50 -63.15 By element: Atomic # 1 Polarization: 44.12 SS G_CDS: -0.51 Total: 43.61 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 5.13 Total: -9.71 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -3.35 Total: -110.37 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -1.79 Total: -32.06 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -64.65 1.50 -63.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319958250.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.606 kcal (2) G-P(sol) polarization free energy of solvation -64.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds