Wall clock time and date at job start Tue Mar 31 2020 16:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 H 1.08998 * 109.46828 * 305.00171 * 5 4 2 7 7 N 1.46498 * 109.46986 * 64.99835 * 5 4 2 8 8 C 1.34776 * 120.00504 * 275.00413 * 7 5 4 9 9 O 1.21353 * 119.99507 * 359.97438 * 8 7 5 10 10 C 1.49450 * 120.00204 * 179.97438 * 8 7 5 11 11 O 1.21349 * 119.99859 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99595 * 179.97438 * 10 8 7 13 13 C 1.46499 * 119.99508 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47136 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.47014 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00273 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99571 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99799 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00090 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.47149 * 90.00032 * 19 17 15 21 21 H 1.48498 * 109.47385 * 210.00427 * 19 17 15 22 22 H 1.48505 * 109.47513 * 330.00339 * 19 17 15 23 23 C 1.50696 * 109.47265 * 184.99984 * 5 4 2 24 24 C 1.38230 * 120.00491 * 279.72718 * 23 5 4 25 25 C 1.38229 * 120.00321 * 179.78691 * 24 23 5 26 26 C 1.38236 * 120.00256 * 0.44617 * 25 24 23 27 27 C 1.38238 * 119.99343 * 359.80658 * 26 25 24 28 28 C 1.38234 * 120.00249 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 32 32 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 33 33 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 36 36 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 37 37 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 38 38 H 0.97004 * 119.99437 * 95.00257 * 7 5 4 39 39 H 0.96995 * 120.00434 * 0.02562 * 12 10 8 40 40 H 1.09004 * 109.47325 * 299.99925 * 13 12 10 41 41 H 1.08996 * 109.47600 * 60.00337 * 13 12 10 42 42 H 1.09004 * 109.46592 * 299.99933 * 14 13 12 43 43 H 1.09004 * 109.46869 * 59.99807 * 14 13 12 44 44 H 0.96997 * 120.00023 * 180.02562 * 18 17 15 45 45 H 1.08002 * 119.99456 * 359.97438 * 24 23 5 46 46 H 1.08001 * 120.00373 * 180.27339 * 25 24 23 47 47 H 1.08001 * 120.00304 * 179.83533 * 26 25 24 48 48 H 1.08002 * 119.99745 * 180.02562 * 27 26 25 49 49 H 1.07999 * 119.99749 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.8311 -1.1881 6 1 3.9954 0.1611 -1.0528 7 7 3.9479 -1.6872 -0.0628 8 6 4.0652 -1.1632 1.1734 9 8 3.8538 0.0180 1.3542 10 6 4.4555 -2.0368 2.3215 11 8 4.6664 -3.2181 2.1407 12 7 4.5732 -1.5125 3.5575 13 6 4.9563 -2.3688 4.6828 14 6 5.0168 -1.5324 5.9626 15 6 5.4115 -2.4131 7.1200 16 1 5.6000 -3.4642 6.9591 17 6 5.5311 -1.8770 8.3847 18 7 5.8750 -2.6456 9.3949 19 14 5.2044 -0.0590 8.6632 20 1 3.7683 0.1425 8.9834 21 1 6.0364 0.4259 9.7936 22 1 5.5487 0.6999 7.4340 23 6 4.0772 -1.4302 -2.4724 24 6 4.0263 -2.7980 -2.6657 25 6 4.4923 -3.3472 -3.8455 26 6 5.0177 -2.5294 -4.8284 27 6 5.0734 -1.1621 -4.6330 28 6 4.6033 -0.6125 -3.4549 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9562 0.8901 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6053 -1.7198 -1.2953 37 1 1.7516 -0.1582 -2.1370 38 1 4.1172 -2.6314 -0.2074 39 1 4.4043 -0.5684 3.7020 40 1 4.2192 -3.1628 4.8026 41 1 5.9349 -2.8077 4.4887 42 1 5.7537 -0.7381 5.8430 43 1 4.0379 -1.0938 6.1565 44 1 5.9588 -2.2686 10.2846 45 1 3.6197 -3.4373 -1.8960 46 1 4.4485 -4.4154 -3.9983 47 1 5.3843 -2.9587 -5.7492 48 1 5.4836 -0.5231 -5.4011 49 1 4.6464 0.4558 -3.3025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321362525.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:28 Heat of formation + Delta-G solvation = -62.967097 kcal Electronic energy + Delta-G solvation = -28354.061491 eV Core-core repulsion = 24473.447783 eV Total energy + Delta-G solvation = -3880.613708 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.99793 -39.68027 -38.52189 -36.72135 -35.37865 -34.57657 -32.82892 -31.82728 -31.22634 -30.29134 -28.68448 -27.19408 -26.05027 -24.59065 -23.42863 -22.84629 -21.15774 -20.87638 -20.20106 -20.06862 -18.46626 -17.15464 -17.03826 -16.70638 -16.33462 -15.70570 -15.57009 -15.18293 -14.85834 -14.76721 -14.26611 -14.19148 -14.14362 -13.78548 -13.68561 -13.60793 -13.17431 -13.05128 -12.63494 -12.61706 -12.50962 -12.23345 -11.90063 -11.64347 -11.54924 -11.42182 -11.38670 -11.25474 -10.97402 -10.72707 -10.59039 -10.44897 -10.29401 -9.96431 -9.49772 -9.40379 -9.31195 -9.27263 -9.04509 -8.77709 -8.61873 -6.12941 -4.13645 0.91509 1.02331 1.54703 2.47246 3.25994 3.34063 3.34575 3.35823 3.41078 3.81831 4.12669 4.37161 4.47694 4.60871 4.64512 4.72253 4.74359 4.78401 4.87746 5.03630 5.13018 5.20168 5.20328 5.34415 5.43945 5.54106 5.58837 5.62579 5.65906 5.70462 5.84280 5.89020 5.96317 6.01754 6.07168 6.09758 6.12058 6.14589 6.27615 6.30913 6.40295 6.46628 6.51104 6.59968 6.96227 7.10069 7.17851 7.56352 7.62089 7.86875 8.21377 8.41277 8.90414 9.47000 10.99833 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.002468 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.810886 B =11341.027801 C =12370.950595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.140 4.140 4 C -0.119 4.119 5 C 0.183 3.817 6 H 0.104 0.896 7 N -0.699 5.699 8 C 0.508 3.492 9 O -0.509 6.509 10 C 0.497 3.503 11 O -0.530 6.530 12 N -0.690 5.690 13 C 0.127 3.873 14 C -0.023 4.023 15 C -0.524 4.524 16 H 0.076 0.924 17 C 0.070 3.930 18 N -0.897 5.897 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.265 1.265 23 C -0.092 4.092 24 C -0.112 4.112 25 C -0.115 4.115 26 C -0.119 4.119 27 C -0.117 4.117 28 C -0.106 4.106 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.411 0.589 39 H 0.409 0.591 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.024 0.976 43 H 0.020 0.980 44 H 0.265 0.735 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.123 0.877 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.788 5.112 -30.070 31.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.198 4.198 4 C -0.158 4.158 5 C 0.079 3.921 6 H 0.122 0.878 7 N -0.353 5.353 8 C 0.289 3.711 9 O -0.385 6.385 10 C 0.277 3.723 11 O -0.407 6.407 12 N -0.341 5.341 13 C 0.006 3.994 14 C -0.061 4.061 15 C -0.562 4.562 16 H 0.095 0.905 17 C -0.132 4.132 18 N -0.535 5.535 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.189 1.189 23 C -0.093 4.093 24 C -0.130 4.130 25 C -0.133 4.133 26 C -0.138 4.138 27 C -0.135 4.135 28 C -0.125 4.125 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.248 0.752 39 H 0.244 0.756 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.043 0.957 43 H 0.038 0.962 44 H 0.075 0.925 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.140 0.860 48 H 0.141 0.859 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.745 5.115 -29.823 31.001 hybrid contribution -0.155 0.812 0.297 0.879 sum -6.900 5.927 -29.526 30.896 Atomic orbital electron populations 1.21851 0.95666 1.01341 1.01565 1.21184 0.95014 0.97250 0.98050 1.21856 1.02534 0.94930 1.00431 1.22090 0.93252 1.01377 0.99064 1.20049 0.95299 0.94860 0.81925 0.87828 1.45908 1.68917 1.13844 1.06664 1.20385 0.78057 0.88265 0.84348 1.90760 1.47814 1.15609 1.84281 1.20007 0.79967 0.87864 0.84495 1.90746 1.49742 1.15830 1.84403 1.46193 1.66228 1.14439 1.07276 1.21707 1.00306 0.93411 0.84011 1.19822 0.97246 0.96553 0.92478 1.20876 1.47553 0.97011 0.90798 0.90549 1.24988 0.94345 0.97961 0.95915 1.69897 1.47613 1.35798 1.00225 0.86767 0.78559 0.85698 0.78180 1.20162 1.21233 1.18944 1.19894 0.99700 0.94046 0.95651 1.20992 0.99863 0.94395 0.97757 1.21164 0.98421 1.00063 0.93638 1.21212 0.99449 0.93847 0.99247 1.21153 0.99728 0.95303 0.97363 1.21003 0.98107 0.99817 0.93563 0.93020 0.93077 0.92670 0.90616 0.93080 0.90918 0.94049 0.91445 0.90707 0.75152 0.75572 0.91308 0.91282 0.95739 0.96173 0.92503 0.85896 0.85767 0.85997 0.85851 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.19 37.16 0.34 -1.00 16 2 C -0.10 -0.98 2.38 -90.62 -0.22 -1.20 16 3 C -0.14 -1.45 8.04 37.16 0.30 -1.15 16 4 C -0.12 -1.03 4.34 -26.73 -0.12 -1.14 16 5 C 0.18 1.66 2.37 -69.08 -0.16 1.50 16 6 H 0.10 1.02 5.79 -51.93 -0.30 0.72 16 7 N -0.70 -7.54 4.97 -55.37 -0.28 -7.81 16 8 C 0.51 6.81 6.44 -11.59 -0.07 6.74 16 9 O -0.51 -7.17 11.44 5.49 0.06 -7.11 16 10 C 0.50 8.00 7.89 -11.59 -0.09 7.90 16 11 O -0.53 -9.64 16.48 5.50 0.09 -9.55 16 12 N -0.69 -11.59 5.55 -60.73 -0.34 -11.93 16 13 C 0.13 2.52 5.61 -4.04 -0.02 2.50 16 14 C -0.02 -0.53 4.16 -27.88 -0.12 -0.64 16 15 C -0.52 -14.50 9.66 -34.44 -0.33 -14.83 16 16 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.13 13.96 55.43 0.77 -26.35 16 19 Si 0.88 21.08 27.47 -169.99 -4.67 16.42 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 23 C -0.09 -0.77 4.96 -104.63 -0.52 -1.29 16 24 C -0.11 -0.90 9.06 -39.59 -0.36 -1.26 16 25 C -0.11 -0.84 10.05 -39.59 -0.40 -1.23 16 26 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 27 C -0.12 -0.81 10.05 -39.58 -0.40 -1.21 16 28 C -0.11 -0.81 9.67 -39.58 -0.38 -1.19 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.94 5.19 -51.93 -0.27 0.67 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.82 4.76 -51.93 -0.25 0.57 16 35 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.41 4.23 6.33 -40.82 -0.26 3.97 16 39 H 0.41 6.32 7.94 -40.82 -0.32 6.00 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 41 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 42 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 43 H 0.02 0.44 7.57 -51.93 -0.39 0.05 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.12 0.89 6.90 -52.49 -0.36 0.53 16 46 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 47 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 48 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 49 H 0.12 0.77 8.04 -52.49 -0.42 0.35 16 LS Contribution 393.45 15.07 5.93 5.93 Total: -1.00 -31.19 393.45 -9.08 -40.27 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.61 Total: 6.95 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: -3.04 Total: -6.81 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: 0.16 Total: -46.10 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: 0.15 Total: -16.66 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.42 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.19 -9.08 -40.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321362525.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.697 kcal (2) G-P(sol) polarization free energy of solvation -31.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds