Wall clock time and date at job start Tue Mar 31 2020 16:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 H 1.08998 * 109.46828 * 305.00171 * 5 4 2 7 7 N 1.46498 * 109.46986 * 64.99835 * 5 4 2 8 8 C 1.34776 * 120.00504 * 275.00413 * 7 5 4 9 9 O 1.21353 * 119.99507 * 359.97438 * 8 7 5 10 10 C 1.49450 * 120.00204 * 179.97438 * 8 7 5 11 11 O 1.21349 * 119.99859 * 359.97438 * 10 8 7 12 12 N 1.34777 * 119.99595 * 179.97438 * 10 8 7 13 13 C 1.46499 * 119.99508 * 180.02562 * 12 10 8 14 14 C 1.53005 * 109.47136 * 180.02562 * 13 12 10 15 15 C 1.50703 * 109.47014 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00273 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99571 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99799 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 120.00090 * 359.97438 * 17 15 14 20 20 H 1.48508 * 109.47149 * 90.00032 * 19 17 15 21 21 H 1.48498 * 109.47385 * 210.00427 * 19 17 15 22 22 H 1.48505 * 109.47513 * 330.00339 * 19 17 15 23 23 C 1.50696 * 109.47265 * 184.99984 * 5 4 2 24 24 C 1.38230 * 120.00491 * 279.72718 * 23 5 4 25 25 C 1.38229 * 120.00321 * 179.78691 * 24 23 5 26 26 C 1.38236 * 120.00256 * 0.44617 * 25 24 23 27 27 C 1.38238 * 119.99343 * 359.80658 * 26 25 24 28 28 C 1.38234 * 120.00249 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 30 30 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 32 32 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 33 33 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 36 36 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 37 37 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 38 38 H 0.97004 * 119.99437 * 95.00257 * 7 5 4 39 39 H 0.96995 * 120.00434 * 0.02562 * 12 10 8 40 40 H 1.09004 * 109.47325 * 299.99925 * 13 12 10 41 41 H 1.08996 * 109.47600 * 60.00337 * 13 12 10 42 42 H 1.09004 * 109.46592 * 299.99933 * 14 13 12 43 43 H 1.09004 * 109.46869 * 59.99807 * 14 13 12 44 44 H 0.96997 * 120.00023 * 180.02562 * 18 17 15 45 45 H 1.08002 * 119.99456 * 359.97438 * 24 23 5 46 46 H 1.08001 * 120.00373 * 180.27339 * 25 24 23 47 47 H 1.08001 * 120.00304 * 179.83533 * 26 25 24 48 48 H 1.08002 * 119.99745 * 180.02562 * 27 26 25 49 49 H 1.07999 * 119.99749 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.8311 -1.1881 6 1 3.9954 0.1611 -1.0528 7 7 3.9479 -1.6872 -0.0628 8 6 4.0652 -1.1632 1.1734 9 8 3.8538 0.0180 1.3542 10 6 4.4555 -2.0368 2.3215 11 8 4.6664 -3.2181 2.1407 12 7 4.5732 -1.5125 3.5575 13 6 4.9563 -2.3688 4.6828 14 6 5.0168 -1.5324 5.9626 15 6 5.4115 -2.4131 7.1200 16 1 5.6000 -3.4642 6.9591 17 6 5.5311 -1.8770 8.3847 18 7 5.8750 -2.6456 9.3949 19 14 5.2044 -0.0590 8.6632 20 1 3.7683 0.1425 8.9834 21 1 6.0364 0.4259 9.7936 22 1 5.5487 0.6999 7.4340 23 6 4.0772 -1.4302 -2.4724 24 6 4.0263 -2.7980 -2.6657 25 6 4.4923 -3.3472 -3.8455 26 6 5.0177 -2.5294 -4.8284 27 6 5.0734 -1.1621 -4.6330 28 6 4.6033 -0.6125 -3.4549 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9562 0.8901 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6053 -1.7198 -1.2953 37 1 1.7516 -0.1582 -2.1370 38 1 4.1172 -2.6314 -0.2074 39 1 4.4043 -0.5684 3.7020 40 1 4.2192 -3.1628 4.8026 41 1 5.9349 -2.8077 4.4887 42 1 5.7537 -0.7381 5.8430 43 1 4.0379 -1.0938 6.1565 44 1 5.9588 -2.2686 10.2846 45 1 3.6197 -3.4373 -1.8960 46 1 4.4485 -4.4154 -3.9983 47 1 5.3843 -2.9587 -5.7492 48 1 5.4836 -0.5231 -5.4011 49 1 4.6464 0.4558 -3.3025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321362525.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:27 Heat of formation + Delta-G solvation = -82.356274 kcal Electronic energy + Delta-G solvation = -28354.902269 eV Core-core repulsion = 24473.447783 eV Total energy + Delta-G solvation = -3881.454486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.01333 -40.56144 -39.54998 -37.58268 -36.86908 -35.53637 -34.78799 -32.54907 -32.12436 -31.76723 -29.38884 -27.97510 -27.60224 -25.70979 -24.39000 -23.55831 -22.65911 -21.87533 -21.25702 -20.92519 -19.59704 -19.02612 -17.94427 -17.75445 -17.34683 -16.75361 -16.43294 -16.32550 -16.19735 -15.89904 -15.44853 -15.38285 -15.10011 -14.82302 -14.72058 -14.57783 -14.26107 -14.16039 -13.78877 -13.40015 -13.34036 -13.26103 -13.07444 -12.95129 -12.74209 -12.55989 -12.23476 -12.21040 -12.16547 -11.92388 -11.78922 -11.76516 -11.51589 -11.46991 -11.35663 -10.79731 -10.63466 -10.30177 -10.22634 -9.82974 -9.65644 -8.30878 -6.37674 0.32475 0.38110 0.49093 1.34798 1.39034 1.40666 1.51853 2.14995 2.35726 2.64193 2.88000 3.04310 3.42403 3.47868 3.88655 3.98193 4.08001 4.13844 4.14027 4.25960 4.30872 4.34978 4.37871 4.55556 4.61748 4.68501 4.71381 4.76038 4.82210 4.86140 4.97033 4.99079 5.04387 5.08671 5.09631 5.14604 5.27004 5.29267 5.36331 5.36959 5.49639 5.54704 5.58148 5.60669 5.63056 5.63460 5.96456 6.08836 6.20150 6.35948 6.68136 6.76142 6.95706 7.26885 8.85431 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.015728 B = 0.002468 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.810886 B =11341.027801 C =12370.950595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.136 4.136 4 C -0.113 4.113 5 C 0.187 3.813 6 H 0.100 0.900 7 N -0.686 5.686 8 C 0.516 3.484 9 O -0.515 6.515 10 C 0.497 3.503 11 O -0.553 6.553 12 N -0.687 5.687 13 C 0.142 3.858 14 C -0.016 4.016 15 C -0.536 4.536 16 H 0.035 0.965 17 C 0.007 3.993 18 N -0.947 5.947 19 Si 0.953 3.047 20 H -0.266 1.266 21 H -0.286 1.286 22 H -0.241 1.241 23 C -0.103 4.103 24 C -0.124 4.124 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.122 4.122 28 C -0.115 4.115 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.038 0.962 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.414 0.586 39 H 0.418 0.582 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.035 0.965 43 H 0.034 0.966 44 H 0.268 0.732 45 H 0.125 0.875 46 H 0.138 0.862 47 H 0.142 0.858 48 H 0.143 0.857 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.481 7.171 -32.653 34.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.193 4.193 4 C -0.151 4.151 5 C 0.084 3.916 6 H 0.117 0.883 7 N -0.340 5.340 8 C 0.296 3.704 9 O -0.391 6.391 10 C 0.278 3.722 11 O -0.431 6.431 12 N -0.339 5.339 13 C 0.019 3.981 14 C -0.054 4.054 15 C -0.574 4.574 16 H 0.054 0.946 17 C -0.190 4.190 18 N -0.587 5.587 19 Si 0.776 3.224 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.164 1.164 23 C -0.104 4.104 24 C -0.143 4.143 25 C -0.142 4.142 26 C -0.142 4.142 27 C -0.140 4.140 28 C -0.133 4.133 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.108 0.892 38 H 0.252 0.748 39 H 0.255 0.745 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.077 0.923 45 H 0.143 0.857 46 H 0.156 0.844 47 H 0.159 0.841 48 H 0.161 0.839 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.450 7.179 -32.460 34.068 hybrid contribution 0.084 0.048 1.014 1.019 sum -7.366 7.227 -31.445 33.095 Atomic orbital electron populations 1.21826 0.94879 1.01550 1.01937 1.21160 0.95714 0.97054 0.97703 1.21801 1.01764 0.95067 1.00671 1.22038 0.92656 1.01517 0.98868 1.20112 0.95713 0.94250 0.81553 0.88266 1.45914 1.67638 1.14231 1.06201 1.19793 0.78608 0.87661 0.84329 1.90771 1.48496 1.15528 1.84316 1.20496 0.78945 0.87879 0.84861 1.90734 1.50541 1.17044 1.84816 1.45954 1.66519 1.14504 1.06899 1.21258 0.99534 0.93075 0.84201 1.19684 0.97889 0.96113 0.91702 1.21200 1.47259 0.96097 0.92893 0.94636 1.25999 0.94036 1.03516 0.95476 1.70055 1.49343 1.38397 1.00938 0.85624 0.78789 0.79106 0.78920 1.19084 1.21142 1.16386 1.19843 1.00750 0.94332 0.95428 1.21120 1.00355 0.94452 0.98331 1.21415 0.98285 1.01034 0.93509 1.21530 0.98813 0.93978 0.99839 1.21451 0.99282 0.95735 0.97564 1.21218 0.97934 1.00474 0.93682 0.91631 0.92966 0.93315 0.93068 0.94233 0.91986 0.92371 0.91261 0.89164 0.74813 0.74514 0.92387 0.92412 0.94637 0.94767 0.92305 0.85742 0.84418 0.84055 0.83872 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.19 71.98 0.66 -1.76 16 2 C -0.10 -1.86 2.38 -10.79 -0.03 -1.89 16 3 C -0.14 -2.60 8.04 71.98 0.58 -2.02 16 4 C -0.11 -1.74 4.34 30.59 0.13 -1.61 16 5 C 0.19 3.14 2.37 44.25 0.10 3.25 16 6 H 0.10 1.80 5.79 -2.39 -0.01 1.79 16 7 N -0.69 -14.19 4.97 -447.44 -2.22 -16.41 16 8 C 0.52 13.43 6.44 87.27 0.56 13.99 16 9 O -0.52 -13.99 11.44 -3.26 -0.04 -14.03 16 10 C 0.50 15.79 7.89 87.27 0.69 16.48 16 11 O -0.55 -20.13 16.48 -3.24 -0.05 -20.18 16 12 N -0.69 -22.59 5.55 -464.41 -2.58 -25.16 16 13 C 0.14 5.67 5.61 86.38 0.48 6.15 16 14 C -0.02 -0.72 4.16 29.85 0.12 -0.59 16 15 C -0.54 -30.27 9.66 25.60 0.25 -30.02 16 16 H 0.04 2.22 7.99 -2.91 -0.02 2.20 16 17 C 0.01 0.42 5.47 84.66 0.46 0.88 16 18 N -0.95 -58.74 13.96 21.45 0.30 -58.44 16 19 Si 0.95 42.81 27.47 68.60 1.88 44.70 16 20 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 21 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.24 -9.80 6.54 99.48 0.65 -9.15 16 23 C -0.10 -1.56 4.96 -19.87 -0.10 -1.66 16 24 C -0.12 -1.83 9.06 22.27 0.20 -1.63 16 25 C -0.12 -1.60 10.05 22.27 0.22 -1.37 16 26 C -0.12 -1.40 10.05 22.27 0.22 -1.18 16 27 C -0.12 -1.39 10.05 22.27 0.22 -1.17 16 28 C -0.11 -1.51 9.67 22.27 0.22 -1.30 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 1.24 5.19 -2.39 -0.01 1.22 16 33 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 1.32 4.76 -2.39 -0.01 1.31 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.41 8.23 6.33 -92.71 -0.59 7.64 16 39 H 0.42 12.31 7.94 -92.71 -0.74 11.57 16 40 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.04 1.52 7.20 -2.39 -0.02 1.50 16 43 H 0.03 1.44 7.57 -2.39 -0.02 1.42 16 44 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 45 H 0.12 1.69 6.90 -2.91 -0.02 1.67 16 46 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 47 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 48 H 0.14 0.99 8.06 -2.91 -0.02 0.97 16 49 H 0.14 1.39 8.04 -2.91 -0.02 1.37 16 Total: -1.00 -67.99 393.45 1.89 -66.10 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: -0.41 Total: 28.86 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 5.01 Total: -5.44 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -4.50 Total: -100.01 kcal Atomic # 8 Polarization: -34.12 SS G_CDS: -0.09 Total: -34.21 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.70 kcal Total: -67.99 1.89 -66.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321362525.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.253 kcal (2) G-P(sol) polarization free energy of solvation -67.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds