Wall clock time and date at job start Tue Mar 31 2020 17:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46892 * 2 1 4 4 C 1.53006 * 109.47119 * 119.99785 * 2 1 3 5 5 H 1.09004 * 109.46901 * 60.00233 * 4 2 1 6 6 C 1.52993 * 109.47133 * 300.00294 * 4 2 1 7 7 N 1.46493 * 109.47346 * 185.00123 * 6 4 2 8 8 C 1.34781 * 120.00398 * 180.02562 * 7 6 4 9 9 O 1.21545 * 119.99576 * 359.97438 * 8 7 6 10 10 C 1.47841 * 119.99992 * 179.97438 * 8 7 6 11 11 C 1.39459 * 120.01596 * 359.72625 * 10 8 7 12 12 C 1.37937 * 119.70160 * 179.77243 * 11 10 8 13 13 C 1.38212 * 120.05605 * 0.61817 * 12 11 10 14 14 C 1.38756 * 120.60870 * 359.73740 * 13 12 11 15 15 C 1.37661 * 119.86858 * 359.77907 * 14 13 12 16 16 C 1.50712 * 121.42538 * 180.63923 * 15 14 13 17 17 C 1.52967 * 109.78145 * 342.81836 * 16 15 14 18 18 O 1.43207 * 108.47707 * 49.12220 * 17 16 15 19 19 C 1.42713 * 113.13848 * 289.45311 * 18 17 16 20 20 N 1.46493 * 109.46887 * 179.97438 * 4 2 1 21 21 C 1.36936 * 120.00314 * 274.99849 * 20 4 2 22 22 H 1.08001 * 120.00159 * 0.02562 * 21 20 4 23 23 C 1.38811 * 119.99842 * 180.02562 * 21 20 4 24 24 N 1.31624 * 119.99540 * 179.72505 * 23 21 20 25 25 Si 1.86800 * 120.00451 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.46758 * 269.72270 * 25 23 21 27 27 H 1.48499 * 109.47026 * 29.72118 * 25 23 21 28 28 H 1.48496 * 109.47474 * 149.72153 * 25 23 21 29 29 H 1.08997 * 109.47066 * 300.00001 * 1 2 3 30 30 H 1.09000 * 109.47191 * 60.00328 * 1 2 3 31 31 H 1.09004 * 109.47044 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47066 * 239.99999 * 2 1 3 33 33 H 1.09003 * 109.46883 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46935 * 299.99829 * 3 2 1 35 35 H 1.08997 * 109.47266 * 60.00122 * 3 2 1 36 36 H 1.09009 * 109.47018 * 304.99771 * 6 4 2 37 37 H 1.09002 * 109.47579 * 64.99441 * 6 4 2 38 38 H 0.96998 * 119.99959 * 359.97438 * 7 6 4 39 39 H 1.08007 * 120.15173 * 359.97438 * 11 10 8 40 40 H 1.08000 * 119.97736 * 180.36075 * 12 11 10 41 41 H 1.08001 * 119.69540 * 179.70754 * 13 12 11 42 42 H 1.09003 * 109.41826 * 102.91190 * 16 15 14 43 43 H 1.09000 * 109.42210 * 222.72022 * 16 15 14 44 44 H 1.08998 * 109.63245 * 289.42622 * 17 16 15 45 45 H 1.09002 * 109.80670 * 168.92282 * 17 16 15 46 46 H 1.09000 * 109.33919 * 291.62667 * 19 18 17 47 47 H 1.08996 * 109.33701 * 172.11498 * 19 18 17 48 48 H 0.97000 * 120.00040 * 94.99981 * 20 4 2 49 49 H 0.96999 * 119.99889 * 180.27497 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2493 6 6 1.5300 0.0000 2.4985 7 7 2.1141 -0.6175 3.6916 8 6 1.8052 -0.1443 4.9152 9 8 1.0423 0.7950 5.0287 10 6 2.3943 -0.7679 6.1193 11 6 3.2652 -1.8494 5.9897 12 6 3.8148 -2.4232 7.1172 13 6 3.4925 -1.9353 8.3695 14 6 2.6210 -0.8645 8.5077 15 6 2.0739 -0.2770 7.3894 16 6 1.1348 0.8967 7.4981 17 6 0.5985 1.0001 8.9269 18 8 1.7046 0.9243 9.8334 19 6 2.2918 -0.3750 9.8943 20 7 3.5050 -0.7217 1.2490 21 6 4.1892 -1.6935 0.5688 22 1 3.6489 -2.4594 0.0323 23 6 5.5773 -1.6942 0.5690 24 7 6.2350 -2.6315 -0.0803 25 14 6.5120 -0.3700 1.4975 26 1 6.7661 0.7817 0.5951 27 1 5.7067 0.0809 2.6609 28 1 7.8062 -0.9198 1.9748 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.8184 1.0503 2.4548 37 1 0.4437 -0.0768 2.5444 38 1 2.7227 -1.3674 3.6011 39 1 3.5109 -2.2338 5.0107 40 1 4.4944 -3.2572 7.0217 41 1 3.9225 -2.3921 9.2487 42 1 1.6685 1.8126 7.2442 43 1 0.3025 0.7601 6.8076 44 1 -0.0903 0.1777 9.1200 45 1 0.0808 1.9501 9.0593 46 1 1.5917 -1.0658 10.3642 47 1 3.2049 -0.3309 10.4878 48 1 3.9903 -0.0337 1.7305 49 1 7.2050 -2.6343 -0.0769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568456840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:13 Heat of formation + Delta-G solvation = -49.174495 kcal Electronic energy + Delta-G solvation = -29278.458858 eV Core-core repulsion = 25398.443242 eV Total energy + Delta-G solvation = -3880.015616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.80702 -39.23416 -37.71340 -37.29070 -34.15999 -33.32804 -32.90539 -31.95685 -30.86724 -29.88953 -27.66822 -26.75361 -25.75867 -24.52135 -23.77726 -23.04897 -22.23088 -20.65298 -19.91479 -18.84482 -18.06371 -17.35557 -16.69594 -16.24398 -16.01937 -15.81597 -15.45310 -15.34237 -14.84540 -14.50686 -14.31841 -13.90658 -13.67193 -13.63923 -13.50776 -13.17087 -12.93594 -12.70820 -12.61081 -12.48438 -12.47576 -12.00866 -11.83195 -11.64049 -11.58693 -11.31795 -11.15326 -11.04644 -10.78708 -10.69875 -10.53891 -10.19880 -10.08415 -9.86551 -9.67702 -9.35308 -9.07086 -9.00823 -8.79516 -8.64870 -7.39111 -5.87218 -3.24032 0.75192 1.16461 2.87970 3.29197 3.33725 3.35840 3.40172 3.65671 3.74922 4.41758 4.49318 4.53243 4.64923 4.78388 4.91195 5.01989 5.09040 5.11488 5.11782 5.19121 5.28837 5.33146 5.38798 5.52254 5.56015 5.61217 5.64475 5.68843 5.75034 5.78366 5.79153 5.98295 5.99192 6.05827 6.15985 6.19590 6.24578 6.25658 6.31419 6.41897 6.50695 6.57951 6.72386 6.72983 6.84878 6.88249 6.93802 7.74635 7.88328 8.31279 8.37313 9.09101 9.81417 10.00515 11.30649 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.012049 B = 0.003708 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.240167 B = 7550.429901 C = 9099.287899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.175 3.825 5 H 0.062 0.938 6 C 0.107 3.893 7 N -0.710 5.710 8 C 0.553 3.447 9 O -0.544 6.544 10 C -0.134 4.134 11 C -0.077 4.077 12 C -0.129 4.129 13 C -0.088 4.088 14 C -0.139 4.139 15 C -0.013 4.013 16 C -0.118 4.118 17 C 0.055 3.945 18 O -0.378 6.378 19 C 0.106 3.894 20 N -0.745 5.745 21 C -0.247 4.247 22 H 0.092 0.908 23 C 0.011 3.989 24 N -0.930 5.930 25 Si 0.878 3.122 26 H -0.284 1.284 27 H -0.277 1.277 28 H -0.291 1.291 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.043 0.957 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.408 0.592 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.089 0.911 43 H 0.115 0.885 44 H 0.053 0.947 45 H 0.099 0.901 46 H 0.064 0.936 47 H 0.104 0.896 48 H 0.362 0.638 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.679 3.012 16.303 19.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 C -0.200 4.200 4 C 0.065 3.935 5 H 0.080 0.920 6 C -0.017 4.017 7 N -0.362 5.362 8 C 0.341 3.659 9 O -0.424 6.424 10 C -0.137 4.137 11 C -0.096 4.096 12 C -0.147 4.147 13 C -0.106 4.106 14 C -0.139 4.139 15 C -0.014 4.014 16 C -0.154 4.154 17 C -0.022 4.022 18 O -0.296 6.296 19 C 0.029 3.971 20 N -0.388 5.388 21 C -0.376 4.376 22 H 0.109 0.891 23 C -0.185 4.185 24 N -0.577 5.577 25 Si 0.708 3.292 26 H -0.210 1.210 27 H -0.203 1.203 28 H -0.217 1.217 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.246 0.754 39 H 0.152 0.848 40 H 0.150 0.850 41 H 0.145 0.855 42 H 0.107 0.893 43 H 0.133 0.867 44 H 0.071 0.929 45 H 0.117 0.883 46 H 0.082 0.918 47 H 0.122 0.878 48 H 0.195 0.805 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.068 3.615 16.312 20.041 hybrid contribution 1.288 0.200 0.125 1.310 sum -9.780 3.815 16.437 19.503 Atomic orbital electron populations 1.21916 0.96431 1.01199 1.01102 1.21687 0.93882 0.96896 1.00764 1.21787 1.02074 0.95925 1.00166 1.20489 0.85045 0.97377 0.90579 0.91992 1.21902 0.97769 0.97880 0.84105 1.45997 1.48432 1.36469 1.05302 1.18220 0.81216 0.83155 0.83314 1.90670 1.36818 1.28568 1.86391 1.19910 1.01598 0.98894 0.93331 1.21478 0.94319 0.94058 0.99757 1.21065 1.00710 1.00851 0.92040 1.21157 0.96297 0.95212 0.97920 1.20196 0.99704 0.98065 0.95946 1.19532 0.95518 0.95471 0.90907 1.21434 1.00195 0.96312 0.97508 1.22809 0.88261 1.02470 0.88629 1.88054 1.47975 1.29928 1.63684 1.21371 0.98609 0.84910 0.92206 1.42830 1.00351 1.33392 1.62239 1.19039 0.89380 1.04566 1.24648 0.89053 1.24633 0.96146 0.97850 0.99913 1.69692 1.07129 1.34622 1.46268 0.86673 0.79988 0.82426 0.80137 1.21044 1.20317 1.21719 0.92944 0.93334 0.93009 0.90365 0.91971 0.93818 0.93463 0.91269 0.91051 0.75424 0.84831 0.85016 0.85501 0.89273 0.86672 0.92865 0.88262 0.91810 0.87822 0.80456 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.84 37.16 0.33 -1.61 16 2 C -0.11 -1.77 2.91 -90.62 -0.26 -2.03 16 3 C -0.14 -2.23 8.69 37.16 0.32 -1.90 16 4 C 0.17 3.02 2.27 -67.93 -0.15 2.87 16 5 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 6 C 0.11 1.69 4.51 -4.05 -0.02 1.67 16 7 N -0.71 -11.27 5.34 -61.26 -0.33 -11.60 16 8 C 0.55 8.93 7.73 -12.33 -0.10 8.83 16 9 O -0.54 -9.56 13.17 5.33 0.07 -9.49 16 10 C -0.13 -1.96 5.88 -104.90 -0.62 -2.57 16 11 C -0.08 -1.02 9.54 -39.24 -0.37 -1.40 16 12 C -0.13 -1.44 10.03 -39.70 -0.40 -1.84 16 13 C -0.09 -0.90 9.66 -39.40 -0.38 -1.28 16 14 C -0.14 -1.60 5.80 -104.65 -0.61 -2.21 16 15 C -0.01 -0.18 5.81 -104.21 -0.61 -0.78 16 16 C -0.12 -1.51 4.55 -27.89 -0.13 -1.64 16 17 C 0.05 0.57 6.85 37.14 0.25 0.82 16 18 O -0.38 -4.39 10.80 -35.23 -0.38 -4.77 16 19 C 0.11 1.01 6.66 36.00 0.24 1.25 16 20 N -0.75 -15.76 3.60 -53.43 -0.19 -15.95 16 21 C -0.25 -6.34 10.41 -15.06 -0.16 -6.50 16 22 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 23 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 24 N -0.93 -27.79 13.97 55.49 0.78 -27.01 16 25 Si 0.88 21.20 27.74 -169.99 -4.72 16.48 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.28 -6.34 6.51 56.52 0.37 -5.97 16 28 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 29 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.06 1.11 7.61 -51.93 -0.39 0.72 16 34 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.69 6.32 -51.93 -0.33 0.36 16 36 H 0.07 1.14 6.17 -51.92 -0.32 0.82 16 37 H 0.07 1.05 6.71 -51.93 -0.35 0.70 16 38 H 0.41 6.49 6.16 -40.82 -0.25 6.24 16 39 H 0.13 1.72 6.40 -52.48 -0.34 1.39 16 40 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 42 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 43 H 0.12 1.59 5.98 -51.93 -0.31 1.28 16 44 H 0.05 0.49 8.07 -51.93 -0.42 0.07 16 45 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.36 7.85 5.66 -40.82 -0.23 7.62 16 49 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 382.28 15.07 5.76 5.76 Total: -1.00 -30.72 382.28 -9.27 -40.00 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -7.52 Total: 14.69 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: -2.75 Total: -8.11 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.26 Total: -54.56 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.31 Total: -14.26 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.72 Total: 16.48 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.72 -9.27 -40.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568456840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.179 kcal (2) G-P(sol) polarization free energy of solvation -30.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds