Wall clock time and date at job start Tue Mar 31 2020 16:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47076 * 2 1 4 4 C 1.52996 * 109.47323 * 239.99310 * 2 1 3 5 5 C 1.53003 * 109.46723 * 119.99413 * 2 1 3 6 6 H 1.09003 * 109.47364 * 299.99889 * 5 2 1 7 7 C 1.53004 * 109.46900 * 180.02562 * 5 2 1 8 8 N 1.46507 * 109.46979 * 185.00203 * 7 5 2 9 9 C 1.36935 * 119.99710 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00188 * 359.97438 * 9 8 7 11 11 C 1.38815 * 119.99934 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99891 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00192 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47011 * 90.00339 * 13 11 9 15 15 H 1.48500 * 109.47472 * 210.00034 * 13 11 9 16 16 H 1.48501 * 109.47188 * 330.00278 * 13 11 9 17 17 N 1.46505 * 109.47057 * 60.00349 * 5 2 1 18 18 C 1.34774 * 119.99671 * 274.99411 * 17 5 2 19 19 O 1.21277 * 120.00106 * 0.02562 * 18 17 5 20 20 C 1.50699 * 119.99707 * 179.97438 * 18 17 5 21 21 H 1.08995 * 110.67083 * 306.76671 * 20 18 17 22 22 C 1.54707 * 110.74865 * 70.18819 * 20 18 17 23 23 C 1.51642 * 101.93430 * 143.57462 * 22 20 18 24 24 C 1.37746 * 132.16572 * 164.23932 * 23 22 20 25 25 C 1.38355 * 119.97461 * 180.95267 * 24 23 22 26 26 C 1.38281 * 119.76789 * 359.97438 * 25 24 23 27 27 C 1.37930 * 120.35229 * 359.78872 * 26 25 24 28 28 C 1.38880 * 107.04662 * 344.73211 * 23 22 20 29 29 O 1.36135 * 111.22410 * 358.76064 * 28 23 22 30 30 H 1.08993 * 109.47260 * 300.00527 * 1 2 3 31 31 H 1.08996 * 109.46749 * 60.00491 * 1 2 3 32 32 H 1.09003 * 109.46682 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47170 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47032 * 299.99628 * 3 2 1 35 35 H 1.09003 * 109.47594 * 59.99754 * 3 2 1 36 36 H 1.08993 * 109.47238 * 300.00277 * 4 2 1 37 37 H 1.08996 * 109.47046 * 60.00380 * 4 2 1 38 38 H 1.09000 * 109.47041 * 180.02562 * 4 2 1 39 39 H 1.09009 * 109.47199 * 304.99574 * 7 5 2 40 40 H 1.08995 * 109.47709 * 64.99909 * 7 5 2 41 41 H 0.96998 * 119.99880 * 359.97438 * 8 7 5 42 42 H 0.96998 * 120.00083 * 180.02562 * 12 11 9 43 43 H 0.96994 * 119.99503 * 95.00135 * 17 5 2 44 44 H 1.09000 * 110.93645 * 261.73208 * 22 20 18 45 45 H 1.08998 * 110.93770 * 25.37648 * 22 20 18 46 46 H 1.07996 * 120.01212 * 1.22888 * 24 23 22 47 47 H 1.07995 * 120.11267 * 179.97438 * 25 24 23 48 48 H 1.08002 * 119.82547 * 179.77720 * 26 25 24 49 49 H 1.08000 * 119.88172 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0399 -0.7212 1.2494 6 1 1.6766 -0.2072 2.1393 7 6 3.5700 -0.7206 1.2497 8 7 4.0583 -1.5128 2.3813 9 6 5.4046 -1.6563 2.5862 10 1 6.1064 -1.1859 1.9135 11 6 5.8674 -2.4065 3.6586 12 7 5.0121 -2.9802 4.4782 13 14 7.7038 -2.6028 3.9379 14 1 8.1912 -1.5075 4.8142 15 1 7.9687 -3.9116 4.5877 16 1 8.4118 -2.5455 2.6337 17 7 1.5516 -2.1024 1.2494 18 6 0.3297 -2.3851 1.7427 19 8 -0.3658 -1.4959 2.1861 20 6 -0.1729 -3.8058 1.7423 21 1 -0.1052 -4.2375 0.7437 22 6 0.6057 -4.6629 2.7682 23 6 -0.4789 -5.5814 3.2969 24 6 -0.4272 -6.7562 4.0141 25 6 -1.5979 -7.4097 4.3556 26 6 -2.8167 -6.8789 3.9748 27 6 -2.8710 -5.7001 3.2607 28 6 -1.6972 -5.0344 2.9155 29 8 -1.5224 -3.8689 2.2341 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 1.6768 -1.7490 -1.2490 37 1 1.6768 -0.2076 -2.1391 38 1 3.1301 -0.7217 -1.2488 39 1 3.9337 -1.1549 0.3184 40 1 3.9330 0.3032 1.3394 41 1 3.4280 -1.9356 2.9852 42 1 5.3354 -3.5041 5.2277 43 1 2.1078 -2.8134 0.8945 44 1 1.3953 -5.2336 2.2795 45 1 1.0133 -4.0414 3.5655 46 1 0.5266 -7.1647 4.3137 47 1 -1.5600 -8.3312 4.9175 48 1 -3.7310 -7.3902 4.2377 49 1 -3.8270 -5.2921 2.9676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700989141.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:22 Heat of formation + Delta-G solvation = -32.793676 kcal Electronic energy + Delta-G solvation = -29558.813640 eV Core-core repulsion = 25679.508350 eV Total energy + Delta-G solvation = -3879.305291 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.37875 -39.84131 -37.75174 -36.89550 -34.48526 -33.48290 -32.57062 -31.12575 -30.09010 -29.61370 -27.73015 -27.15195 -26.66307 -24.57914 -23.60081 -22.35040 -21.66502 -21.49148 -20.42234 -18.63702 -17.74338 -17.42086 -16.83591 -16.74810 -16.14886 -15.67081 -15.37627 -14.78772 -14.46986 -14.19088 -13.95281 -13.90182 -13.55791 -13.41954 -13.18656 -13.15197 -13.04522 -12.91227 -12.68554 -12.21848 -12.03655 -11.87562 -11.82574 -11.75158 -11.38978 -11.25807 -11.23400 -11.07866 -10.85785 -10.83267 -10.75878 -10.52977 -10.26543 -9.97400 -9.79039 -9.53497 -8.94579 -8.94243 -8.65805 -8.17749 -6.99873 -5.83195 -3.12563 1.22946 1.32142 2.67380 2.81491 3.38904 3.44551 3.45800 3.57951 3.76673 4.38549 4.48858 4.52909 4.80384 4.86057 4.91527 4.95084 4.98696 5.05097 5.15303 5.22360 5.31928 5.49271 5.52363 5.53988 5.67849 5.71662 5.76733 5.85043 5.87971 5.89543 6.01329 6.02089 6.05873 6.10792 6.14585 6.24155 6.28876 6.36059 6.41661 6.42725 6.44133 6.46870 6.52340 6.61746 6.69930 6.90450 7.12595 7.63654 7.74646 8.34718 8.42562 9.46899 10.02364 10.37869 11.39065 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008452 B = 0.004296 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.853085 B = 6516.604108 C = 9446.308119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.077 4.077 3 C -0.141 4.141 4 C -0.141 4.141 5 C 0.151 3.849 6 H 0.087 0.913 7 C 0.142 3.858 8 N -0.731 5.731 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.010 4.010 12 N -0.930 5.930 13 Si 0.906 3.094 14 H -0.290 1.290 15 H -0.292 1.292 16 H -0.282 1.282 17 N -0.701 5.701 18 C 0.520 3.480 19 O -0.518 6.518 20 C 0.064 3.936 21 H 0.107 0.893 22 C -0.099 4.099 23 C -0.165 4.165 24 C -0.067 4.067 25 C -0.151 4.151 26 C -0.089 4.089 27 C -0.139 4.139 28 C 0.105 3.895 29 O -0.275 6.275 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.030 0.970 40 H 0.036 0.964 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.404 0.596 44 H 0.104 0.896 45 H 0.106 0.894 46 H 0.128 0.872 47 H 0.127 0.873 48 H 0.129 0.871 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.833 -4.903 -8.142 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.078 4.078 3 C -0.199 4.199 4 C -0.199 4.199 5 C 0.046 3.954 6 H 0.106 0.894 7 C 0.014 3.986 8 N -0.376 5.376 9 C -0.373 4.373 10 H 0.088 0.912 11 C -0.206 4.206 12 N -0.579 5.579 13 Si 0.737 3.263 14 H -0.217 1.217 15 H -0.218 1.218 16 H -0.208 1.208 17 N -0.353 5.353 18 C 0.304 3.696 19 O -0.394 6.394 20 C 0.005 3.995 21 H 0.125 0.875 22 C -0.136 4.136 23 C -0.166 4.166 24 C -0.085 4.085 25 C -0.169 4.169 26 C -0.107 4.107 27 C -0.158 4.158 28 C 0.060 3.940 29 O -0.188 6.188 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.054 0.946 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.239 0.761 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.146 0.854 47 H 0.145 0.855 48 H 0.147 0.853 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.308 -4.051 -7.886 15.991 hybrid contribution 1.279 -0.678 0.314 1.481 sum -12.029 -4.728 -7.572 14.980 Atomic orbital electron populations 1.21893 0.94013 1.01770 1.01087 1.20906 0.96087 0.95610 0.95218 1.21887 1.01564 0.94841 1.01565 1.21912 1.01528 0.99961 0.96465 1.21316 0.95088 0.81071 0.97886 0.89449 1.21108 0.89082 0.96104 0.92322 1.42351 1.04863 1.60325 1.30059 1.19198 0.83289 1.26119 1.08711 0.91186 1.24719 0.97531 1.00506 0.97884 1.69654 1.32566 1.38025 1.17627 0.86217 0.85236 0.77111 0.77747 1.21731 1.21803 1.20777 1.45773 1.16419 1.10683 1.62443 1.19791 0.82259 0.89119 0.78422 1.90731 1.56180 1.47312 1.45139 1.23196 0.81478 0.95336 0.99532 0.87498 1.21760 0.96932 0.96211 0.98679 1.20786 0.94329 0.97876 1.03588 1.20380 0.99041 0.93099 0.96009 1.21027 0.92058 1.01099 1.02723 1.20838 0.98185 0.94700 0.96970 1.20220 0.95945 0.95936 1.03694 1.19643 0.94799 0.86073 0.93522 1.86919 1.29442 1.34571 1.67877 0.91975 0.93887 0.93016 0.91860 0.92845 0.92540 0.92936 0.93142 0.91844 0.95262 0.94598 0.78105 0.93503 0.76071 0.87804 0.87604 0.85442 0.85537 0.85299 0.85519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 7.00 37.16 0.26 -1.57 16 2 C -0.08 -1.03 0.62 -154.51 -0.10 -1.12 16 3 C -0.14 -1.76 8.12 37.16 0.30 -1.45 16 4 C -0.14 -1.69 7.97 37.16 0.30 -1.39 16 5 C 0.15 2.42 1.69 -67.92 -0.11 2.31 16 6 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 7 C 0.14 2.60 5.10 -4.04 -0.02 2.58 16 8 N -0.73 -17.21 5.43 -59.90 -0.33 -17.53 16 9 C -0.24 -6.41 9.99 -15.06 -0.15 -6.56 16 10 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 11 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 12 N -0.93 -26.92 13.06 55.49 0.72 -26.19 16 13 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 N -0.70 -10.56 3.64 -53.80 -0.20 -10.75 16 18 C 0.52 8.41 5.48 -10.99 -0.06 8.35 16 19 O -0.52 -10.13 13.70 -13.48 -0.18 -10.31 16 20 C 0.06 0.91 4.05 -26.99 -0.11 0.80 16 21 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 22 C -0.10 -1.39 6.64 -26.52 -0.18 -1.56 16 23 C -0.16 -2.30 6.27 -104.10 -0.65 -2.95 16 24 C -0.07 -0.82 10.03 -39.72 -0.40 -1.22 16 25 C -0.15 -1.58 10.07 -39.52 -0.40 -1.98 16 26 C -0.09 -0.91 10.02 -39.68 -0.40 -1.31 16 27 C -0.14 -1.70 10.06 -39.31 -0.40 -2.09 16 28 C 0.11 1.53 7.04 -38.96 -0.27 1.26 16 29 O -0.28 -4.45 10.39 -39.21 -0.41 -4.86 16 30 H 0.06 0.98 7.53 -51.93 -0.39 0.59 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.77 5.77 -51.93 -0.30 0.47 16 33 H 0.06 0.79 6.54 -51.93 -0.34 0.45 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.61 7.60 -51.93 -0.39 0.21 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.77 6.32 -51.93 -0.33 0.44 16 39 H 0.03 0.52 6.18 -51.92 -0.32 0.20 16 40 H 0.04 0.68 6.71 -51.93 -0.35 0.33 16 41 H 0.38 9.68 7.33 -40.82 -0.30 9.38 16 42 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.40 5.64 8.60 -40.82 -0.35 5.29 16 44 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.11 1.75 7.92 -51.93 -0.41 1.34 16 46 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 47 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 48 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 49 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 388.04 15.07 5.85 5.85 Total: -1.00 -31.66 388.04 -9.70 -41.36 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -7.65 Total: 14.07 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -2.48 Total: -8.28 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.20 Total: -54.48 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: -0.59 Total: -15.17 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.66 -9.70 -41.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700989141.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.564 kcal (2) G-P(sol) polarization free energy of solvation -31.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds