Wall clock time and date at job start Tue Mar 31 2020 16:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47076 * 2 1 4 4 C 1.52996 * 109.47323 * 239.99310 * 2 1 3 5 5 C 1.53003 * 109.46723 * 119.99413 * 2 1 3 6 6 H 1.09003 * 109.47364 * 299.99889 * 5 2 1 7 7 C 1.53004 * 109.46900 * 180.02562 * 5 2 1 8 8 N 1.46507 * 109.46979 * 185.00203 * 7 5 2 9 9 C 1.36935 * 119.99710 * 179.97438 * 8 7 5 10 10 H 1.07999 * 120.00188 * 359.97438 * 9 8 7 11 11 C 1.38815 * 119.99934 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99891 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 120.00192 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.47011 * 90.00339 * 13 11 9 15 15 H 1.48500 * 109.47472 * 210.00034 * 13 11 9 16 16 H 1.48501 * 109.47188 * 330.00278 * 13 11 9 17 17 N 1.46505 * 109.47057 * 60.00349 * 5 2 1 18 18 C 1.34774 * 119.99671 * 274.99411 * 17 5 2 19 19 O 1.21277 * 120.00106 * 0.02562 * 18 17 5 20 20 C 1.50699 * 119.99707 * 179.97438 * 18 17 5 21 21 H 1.08995 * 110.67083 * 306.76671 * 20 18 17 22 22 C 1.54707 * 110.74865 * 70.18819 * 20 18 17 23 23 C 1.51642 * 101.93430 * 143.57462 * 22 20 18 24 24 C 1.37746 * 132.16572 * 164.23932 * 23 22 20 25 25 C 1.38355 * 119.97461 * 180.95267 * 24 23 22 26 26 C 1.38281 * 119.76789 * 359.97438 * 25 24 23 27 27 C 1.37930 * 120.35229 * 359.78872 * 26 25 24 28 28 C 1.38880 * 107.04662 * 344.73211 * 23 22 20 29 29 O 1.36135 * 111.22410 * 358.76064 * 28 23 22 30 30 H 1.08993 * 109.47260 * 300.00527 * 1 2 3 31 31 H 1.08996 * 109.46749 * 60.00491 * 1 2 3 32 32 H 1.09003 * 109.46682 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47170 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47032 * 299.99628 * 3 2 1 35 35 H 1.09003 * 109.47594 * 59.99754 * 3 2 1 36 36 H 1.08993 * 109.47238 * 300.00277 * 4 2 1 37 37 H 1.08996 * 109.47046 * 60.00380 * 4 2 1 38 38 H 1.09000 * 109.47041 * 180.02562 * 4 2 1 39 39 H 1.09009 * 109.47199 * 304.99574 * 7 5 2 40 40 H 1.08995 * 109.47709 * 64.99909 * 7 5 2 41 41 H 0.96998 * 119.99880 * 359.97438 * 8 7 5 42 42 H 0.96998 * 120.00083 * 180.02562 * 12 11 9 43 43 H 0.96994 * 119.99503 * 95.00135 * 17 5 2 44 44 H 1.09000 * 110.93645 * 261.73208 * 22 20 18 45 45 H 1.08998 * 110.93770 * 25.37648 * 22 20 18 46 46 H 1.07996 * 120.01212 * 1.22888 * 24 23 22 47 47 H 1.07995 * 120.11267 * 179.97438 * 25 24 23 48 48 H 1.08002 * 119.82547 * 179.77720 * 26 25 24 49 49 H 1.08000 * 119.88172 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0399 -0.7212 1.2494 6 1 1.6766 -0.2072 2.1393 7 6 3.5700 -0.7206 1.2497 8 7 4.0583 -1.5128 2.3813 9 6 5.4046 -1.6563 2.5862 10 1 6.1064 -1.1859 1.9135 11 6 5.8674 -2.4065 3.6586 12 7 5.0121 -2.9802 4.4782 13 14 7.7038 -2.6028 3.9379 14 1 8.1912 -1.5075 4.8142 15 1 7.9687 -3.9116 4.5877 16 1 8.4118 -2.5455 2.6337 17 7 1.5516 -2.1024 1.2494 18 6 0.3297 -2.3851 1.7427 19 8 -0.3658 -1.4959 2.1861 20 6 -0.1729 -3.8058 1.7423 21 1 -0.1052 -4.2375 0.7437 22 6 0.6057 -4.6629 2.7682 23 6 -0.4789 -5.5814 3.2969 24 6 -0.4272 -6.7562 4.0141 25 6 -1.5979 -7.4097 4.3556 26 6 -2.8167 -6.8789 3.9748 27 6 -2.8710 -5.7001 3.2607 28 6 -1.6972 -5.0344 2.9155 29 8 -1.5224 -3.8689 2.2341 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 1.6768 -1.7490 -1.2490 37 1 1.6768 -0.2076 -2.1391 38 1 3.1301 -0.7217 -1.2488 39 1 3.9337 -1.1549 0.3184 40 1 3.9330 0.3032 1.3394 41 1 3.4280 -1.9356 2.9852 42 1 5.3354 -3.5041 5.2277 43 1 2.1078 -2.8134 0.8945 44 1 1.3953 -5.2336 2.2795 45 1 1.0133 -4.0414 3.5655 46 1 0.5266 -7.1647 4.3137 47 1 -1.5600 -8.3312 4.9175 48 1 -3.7310 -7.3902 4.2377 49 1 -3.8270 -5.2921 2.9676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700989141.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:21 Heat of formation + Delta-G solvation = -51.270909 kcal Electronic energy + Delta-G solvation = -29559.614873 eV Core-core repulsion = 25679.508350 eV Total energy + Delta-G solvation = -3880.106524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.47843 -41.08647 -38.88490 -38.04786 -36.19295 -34.85648 -33.70440 -32.93695 -31.03709 -30.72961 -29.23462 -28.14868 -27.82516 -25.99207 -25.15367 -23.37235 -23.03110 -22.61551 -21.68363 -19.89936 -19.24946 -18.73459 -18.12550 -17.86808 -17.32074 -16.98194 -16.59447 -16.33364 -15.82621 -15.40395 -15.33235 -15.08969 -14.84931 -14.68512 -14.47501 -14.35267 -14.23068 -14.03451 -13.90877 -13.67894 -13.14417 -13.04301 -12.97445 -12.93246 -12.74755 -12.66386 -12.51869 -12.38607 -12.24704 -12.14300 -12.02714 -11.76746 -11.75146 -11.64398 -11.30906 -10.96812 -10.80762 -9.97935 -9.87482 -9.17307 -8.97281 -7.92194 -5.21097 0.29963 0.38535 1.43391 1.49273 1.50463 1.58351 1.60967 2.51437 2.57378 2.76659 3.27621 3.40272 3.43181 3.63432 3.73091 3.82664 3.87107 3.94032 4.03750 4.20809 4.24805 4.29624 4.33535 4.43545 4.51060 4.55623 4.63358 4.68044 4.74623 4.81546 4.83889 4.89757 4.95896 5.05821 5.06577 5.08120 5.15523 5.23814 5.30585 5.35924 5.40817 5.43822 5.51984 5.53206 5.55111 5.58832 5.64340 6.14943 6.28230 6.47648 7.14455 7.36134 8.09135 8.33264 9.30517 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008452 B = 0.004296 C = 0.002963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.853085 B = 6516.604108 C = 9446.308119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.070 4.070 3 C -0.140 4.140 4 C -0.137 4.137 5 C 0.159 3.841 6 H 0.053 0.947 7 C 0.145 3.855 8 N -0.742 5.742 9 C -0.241 4.241 10 H 0.078 0.922 11 C -0.069 4.069 12 N -0.965 5.965 13 Si 0.968 3.032 14 H -0.294 1.294 15 H -0.298 1.298 16 H -0.267 1.267 17 N -0.692 5.692 18 C 0.520 3.480 19 O -0.558 6.558 20 C 0.070 3.930 21 H 0.141 0.859 22 C -0.093 4.093 23 C -0.185 4.185 24 C -0.079 4.079 25 C -0.144 4.144 26 C -0.081 4.081 27 C -0.147 4.147 28 C 0.074 3.926 29 O -0.302 6.302 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.038 0.962 41 H 0.373 0.627 42 H 0.249 0.751 43 H 0.411 0.589 44 H 0.119 0.881 45 H 0.070 0.930 46 H 0.137 0.863 47 H 0.159 0.841 48 H 0.166 0.834 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.936 -6.122 -9.737 17.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.072 4.072 3 C -0.197 4.197 4 C -0.195 4.195 5 C 0.055 3.945 6 H 0.071 0.929 7 C 0.019 3.981 8 N -0.385 5.385 9 C -0.373 4.373 10 H 0.096 0.904 11 C -0.262 4.262 12 N -0.616 5.616 13 Si 0.798 3.202 14 H -0.221 1.221 15 H -0.224 1.224 16 H -0.192 1.192 17 N -0.344 5.344 18 C 0.305 3.695 19 O -0.436 6.436 20 C 0.010 3.990 21 H 0.158 0.842 22 C -0.131 4.131 23 C -0.186 4.186 24 C -0.097 4.097 25 C -0.162 4.162 26 C -0.099 4.099 27 C -0.165 4.165 28 C 0.029 3.971 29 O -0.215 6.215 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.205 0.795 42 H 0.058 0.942 43 H 0.248 0.752 44 H 0.137 0.863 45 H 0.089 0.911 46 H 0.155 0.845 47 H 0.176 0.824 48 H 0.183 0.817 49 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.392 -5.258 -9.532 17.258 hybrid contribution 1.239 -0.293 0.830 1.520 sum -12.153 -5.551 -8.702 15.945 Atomic orbital electron populations 1.21790 0.94309 1.00969 1.00872 1.20862 0.95660 0.96160 0.94493 1.21888 1.01528 0.94127 1.02195 1.21882 1.01428 1.00137 0.96009 1.21144 0.93566 0.81639 0.98190 0.92856 1.21231 0.90417 0.95342 0.91146 1.42525 1.03947 1.60815 1.31231 1.19596 0.84644 1.24830 1.08229 0.90372 1.25462 1.01337 1.01162 0.98213 1.69814 1.34193 1.39333 1.18249 0.85224 0.80817 0.76290 0.77896 1.22114 1.22431 1.19175 1.45677 1.16180 1.10577 1.61958 1.20200 0.82045 0.89807 0.77454 1.90708 1.57296 1.48705 1.46897 1.23261 0.80995 0.93664 1.01043 0.84220 1.21648 0.97571 0.96030 0.97814 1.20884 0.93885 0.98807 1.04974 1.20674 1.00481 0.92741 0.95837 1.21457 0.91361 1.01694 1.01700 1.21296 0.99665 0.93685 0.95254 1.20596 0.95744 0.96526 1.03673 1.20001 0.96017 0.86194 0.94892 1.86859 1.30102 1.35939 1.68630 0.94450 0.91689 0.94152 0.91833 0.90589 0.93612 0.92644 0.91169 0.91850 0.93352 0.94458 0.79460 0.94215 0.75228 0.86264 0.91141 0.84521 0.82377 0.81651 0.84294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.40 7.00 71.98 0.50 -2.89 16 2 C -0.07 -1.83 0.62 -52.18 -0.03 -1.86 16 3 C -0.14 -3.31 8.12 71.98 0.58 -2.73 16 4 C -0.14 -2.95 7.97 71.98 0.57 -2.38 16 5 C 0.16 5.23 1.69 44.99 0.08 5.30 16 6 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 7 C 0.15 5.29 5.10 86.38 0.44 5.73 16 8 N -0.74 -35.36 5.43 -343.43 -1.87 -37.22 16 9 C -0.24 -12.74 9.99 84.03 0.84 -11.90 16 10 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 11 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 12 N -0.97 -57.13 13.06 21.65 0.28 -56.85 16 13 Si 0.97 44.67 29.55 68.60 2.03 46.70 16 14 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 15 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 16 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 17 N -0.69 -21.36 3.64 -442.52 -1.61 -22.97 16 18 C 0.52 17.59 5.48 87.66 0.48 18.07 16 19 O -0.56 -23.15 13.70 15.18 0.21 -22.94 16 20 C 0.07 2.03 4.05 30.43 0.12 2.15 16 21 H 0.14 3.05 8.14 -2.39 -0.02 3.03 16 22 C -0.09 -2.75 6.64 30.73 0.20 -2.55 16 23 C -0.18 -5.24 6.27 -19.53 -0.12 -5.37 16 24 C -0.08 -1.87 10.03 22.18 0.22 -1.64 16 25 C -0.14 -2.65 10.07 22.31 0.22 -2.43 16 26 C -0.08 -1.45 10.02 22.21 0.22 -1.23 16 27 C -0.15 -3.43 10.06 22.45 0.23 -3.20 16 28 C 0.07 2.18 7.04 22.68 0.16 2.34 16 29 O -0.30 -10.12 10.39 -76.88 -0.80 -10.92 16 30 H 0.04 1.21 7.53 -2.39 -0.02 1.19 16 31 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.04 1.20 5.77 -2.39 -0.01 1.19 16 33 H 0.06 1.50 6.54 -2.39 -0.02 1.48 16 34 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.05 1.16 7.60 -2.39 -0.02 1.14 16 37 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 38 H 0.06 1.37 6.32 -2.39 -0.02 1.36 16 39 H 0.05 1.63 6.18 -2.38 -0.01 1.62 16 40 H 0.04 1.38 6.71 -2.39 -0.02 1.37 16 41 H 0.37 19.43 7.33 -92.71 -0.68 18.75 16 42 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 43 H 0.41 11.50 8.60 -92.71 -0.80 10.71 16 44 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 45 H 0.07 2.55 7.92 -2.39 -0.02 2.53 16 46 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 47 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 48 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 49 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -70.49 388.04 2.92 -67.56 By element: Atomic # 1 Polarization: 45.07 SS G_CDS: -0.51 Total: 44.56 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 5.19 Total: -7.91 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -3.20 Total: -117.04 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.59 Total: -33.86 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -70.49 2.92 -67.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700989141.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.290 kcal (2) G-P(sol) polarization free energy of solvation -70.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds