Wall clock time and date at job start Tue Mar 31 2020 17:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46865 * 2 1 4 4 O 1.42895 * 109.47497 * 240.00083 * 2 1 3 5 5 C 1.53003 * 109.47054 * 119.99906 * 2 1 3 6 6 C 1.50691 * 109.47006 * 63.09421 * 5 2 1 7 7 O 1.21288 * 120.00415 * 6.09078 * 6 5 2 8 8 N 1.34782 * 119.99874 * 186.09287 * 6 5 2 9 9 C 1.46504 * 119.99728 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46694 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.75702 * 295.72274 * 10 9 8 12 12 C 1.52784 * 109.76701 * 174.99665 * 10 9 8 13 13 C 1.50595 * 110.85830 * 192.86962 * 12 10 9 14 14 C 1.38977 * 117.63468 * 199.91811 * 13 12 10 15 15 C 1.37900 * 120.58208 * 181.20021 * 14 13 12 16 16 C 1.38264 * 119.82784 * 359.97438 * 15 14 13 17 17 C 1.37963 * 119.71952 * 359.73281 * 16 15 14 18 18 C 1.37666 * 122.84462 * 20.57376 * 13 12 10 19 19 C 1.50808 * 122.33791 * 357.85350 * 18 13 12 20 20 N 1.46704 * 109.67046 * 12.06206 * 19 18 13 21 21 C 1.36941 * 121.34471 * 135.51729 * 20 19 18 22 22 H 1.08002 * 119.99772 * 207.98292 * 21 20 19 23 23 C 1.38818 * 120.00025 * 27.98404 * 21 20 19 24 24 N 1.31611 * 120.00061 * 12.50853 * 23 21 20 25 25 Si 1.86800 * 119.99691 * 192.50501 * 23 21 20 26 26 H 1.48498 * 109.47110 * 60.00110 * 25 23 21 27 27 H 1.48501 * 109.46601 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47283 * 300.00152 * 25 23 21 29 29 H 1.09000 * 109.47164 * 300.00140 * 1 2 3 30 30 H 1.09002 * 109.46941 * 59.99974 * 1 2 3 31 31 H 1.08994 * 109.46821 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46879 * 184.19855 * 3 2 1 33 33 H 1.08995 * 109.46951 * 304.19863 * 3 2 1 34 34 H 1.09002 * 109.47183 * 64.20261 * 3 2 1 35 35 H 0.96697 * 114.00319 * 59.99310 * 4 2 1 36 36 H 1.09003 * 109.46903 * 303.09642 * 5 2 1 37 37 H 1.08992 * 109.47005 * 183.09957 * 5 2 1 38 38 H 0.96996 * 119.99694 * 359.97438 * 8 6 5 39 39 H 1.08990 * 109.47831 * 59.99665 * 9 8 6 40 40 H 1.08997 * 109.46749 * 299.98936 * 9 8 6 41 41 H 1.09000 * 109.19975 * 72.51160 * 12 10 9 42 42 H 1.08999 * 109.20027 * 313.23029 * 12 10 9 43 43 H 1.08004 * 119.70700 * 1.47707 * 14 13 12 44 44 H 1.08003 * 120.08785 * 179.97438 * 15 14 13 45 45 H 1.08000 * 120.14104 * 179.75590 * 16 15 14 46 46 H 1.07992 * 119.75072 * 180.02562 * 17 16 15 47 47 H 1.09001 * 109.43941 * 132.05959 * 19 18 13 48 48 H 1.09001 * 109.44036 * 251.93583 * 19 18 13 49 49 H 0.97001 * 120.00467 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 1.6013 -2.1624 1.2115 7 8 1.0416 -2.6005 0.2287 8 7 1.8307 -2.9646 2.2700 9 6 1.4047 -4.3658 2.2331 10 6 1.7816 -5.0483 3.5496 11 1 2.8661 -5.0703 3.6559 12 6 1.2314 -6.4735 3.5688 13 6 1.3094 -7.0598 4.9538 14 6 1.2568 -8.4435 5.0719 15 6 1.2984 -9.0438 6.3127 16 6 1.3939 -8.2645 7.4508 17 6 1.4525 -6.8909 7.3363 18 6 1.4158 -6.2858 6.0873 19 6 1.5107 -4.7817 6.0312 20 7 1.1843 -4.3165 4.6787 21 6 0.3580 -3.2437 4.4744 22 1 -0.2263 -3.1769 3.5686 23 6 0.2713 -2.2422 5.4317 24 7 1.1501 -2.1891 6.4100 25 14 -1.0925 -0.9697 5.3313 26 1 -2.4105 -1.6500 5.4035 27 1 -0.9649 -0.0171 6.4633 28 1 -0.9865 -0.2308 4.0475 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1274 1.4435 -0.0752 33 1 1.6165 1.9776 -0.8499 34 1 1.7394 1.9342 0.9253 35 1 1.7211 -0.2702 -1.9979 36 1 1.6320 -0.2404 2.1384 37 1 3.1285 -0.6734 1.2775 38 1 2.2786 -2.6144 3.0559 39 1 1.8989 -4.8743 1.4053 40 1 0.3244 -4.4136 2.0959 41 1 1.8128 -7.0914 2.8846 42 1 0.1913 -6.4607 3.2430 43 1 1.1871 -9.0542 4.1839 44 1 1.2565 -10.1198 6.3953 45 1 1.4229 -8.7292 8.4254 46 1 1.5275 -6.2818 8.2249 47 1 0.8084 -4.3472 6.7426 48 1 2.5239 -4.4723 6.2875 49 1 1.0894 -1.4895 7.0792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724894460.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:59 Heat of formation + Delta-G solvation = -46.423775 kcal Electronic energy + Delta-G solvation = -29742.741467 eV Core-core repulsion = 25862.845131 eV Total energy + Delta-G solvation = -3879.896336 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.60645 -39.16833 -37.45930 -36.33741 -33.59905 -32.88121 -32.46155 -31.42770 -30.32021 -29.08997 -27.99608 -27.16777 -25.61410 -25.02194 -22.84360 -21.55946 -21.26907 -20.44117 -19.50222 -18.98421 -17.01878 -16.37881 -16.22484 -15.79321 -15.49384 -15.35080 -14.73306 -14.53910 -14.43246 -14.17843 -13.98911 -13.67756 -13.37735 -13.19068 -12.93705 -12.60206 -12.56915 -12.45098 -12.25686 -12.08281 -11.74132 -11.66566 -11.59253 -11.55144 -11.21114 -11.02503 -10.88996 -10.84308 -10.69845 -10.62510 -10.52580 -10.20783 -10.01349 -9.81840 -9.69163 -8.97684 -8.76648 -8.25278 -8.12607 -7.85925 -6.82398 -5.92945 -3.36176 1.86355 1.93934 3.27569 3.35216 3.38218 3.39896 3.93616 4.28475 4.36166 4.40535 4.88097 5.05092 5.14167 5.15971 5.23013 5.29673 5.36356 5.46854 5.57415 5.58677 5.61698 5.69154 5.74029 5.82590 5.91152 5.92404 5.95951 5.98872 6.05801 6.10833 6.13698 6.20167 6.25115 6.33380 6.40349 6.55546 6.60166 6.62884 6.84070 6.94034 6.95306 7.12760 7.17612 7.29207 7.49588 7.62494 7.71857 7.91089 8.25020 8.40923 9.04396 9.06701 9.66415 10.25352 11.16274 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.003777 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.497743 B = 7411.515369 C = 8789.739947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.145 3.855 3 C -0.179 4.179 4 O -0.542 6.542 5 C -0.130 4.130 6 C 0.512 3.488 7 O -0.545 6.545 8 N -0.699 5.699 9 C 0.139 3.861 10 C 0.158 3.842 11 H 0.041 0.959 12 C -0.090 4.090 13 C -0.067 4.067 14 C -0.128 4.128 15 C -0.140 4.140 16 C -0.131 4.131 17 C -0.124 4.124 18 C -0.077 4.077 19 C 0.208 3.792 20 N -0.587 5.587 21 C -0.243 4.243 22 H 0.071 0.929 23 C 0.007 3.993 24 N -0.905 5.905 25 Si 0.896 3.104 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.281 1.281 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.366 0.634 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.413 0.587 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.117 0.883 47 H 0.094 0.906 48 H 0.043 0.957 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 -1.165 -5.433 6.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.104 3.896 3 C -0.236 4.236 4 O -0.347 6.347 5 C -0.170 4.170 6 C 0.298 3.702 7 O -0.423 6.423 8 N -0.351 5.351 9 C 0.015 3.985 10 C 0.051 3.949 11 H 0.059 0.941 12 C -0.130 4.130 13 C -0.067 4.067 14 C -0.146 4.146 15 C -0.158 4.158 16 C -0.149 4.149 17 C -0.142 4.142 18 C -0.079 4.079 19 C 0.083 3.917 20 N -0.311 5.311 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.192 4.192 24 N -0.550 5.550 25 Si 0.726 3.274 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.208 1.208 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.212 0.788 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.250 0.750 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.135 0.865 47 H 0.112 0.888 48 H 0.060 0.940 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.674 -1.707 -5.533 6.378 hybrid contribution -0.875 1.165 0.314 1.491 sum 1.799 -0.542 -5.220 5.547 Atomic orbital electron populations 1.22606 0.95626 1.04560 1.01368 1.20792 0.93021 0.89922 0.85875 1.22530 1.01943 0.96622 1.02554 1.86691 1.76317 1.56811 1.14840 1.21712 1.02978 0.94241 0.98113 1.20227 0.79526 0.87654 0.82807 1.90620 1.42829 1.76085 1.32806 1.45899 1.60019 1.10870 1.18296 1.21168 0.99953 0.81464 0.95963 1.20714 0.95704 0.90286 0.88239 0.94134 1.20882 1.01747 0.97466 0.92899 1.19493 0.99581 0.92493 0.95177 1.21128 1.01870 0.94448 0.97135 1.20847 1.03163 0.98924 0.92899 1.20951 1.01973 0.94075 0.97884 1.21116 1.01270 0.94433 0.97396 1.21006 0.95510 0.99508 0.91862 1.19759 1.00029 0.83722 0.88239 1.44021 1.54596 1.33180 0.99256 1.19071 1.16453 0.96374 1.05312 0.91097 1.25013 0.97959 0.97283 0.98917 1.69954 1.34494 1.34646 1.15875 0.86462 0.82478 0.81293 0.77154 1.21061 1.21620 1.20764 0.92290 0.93052 0.89642 0.91858 0.92383 0.91511 0.78807 0.87862 0.88877 0.75002 0.92716 0.91797 0.91895 0.90823 0.87082 0.87132 0.87005 0.86489 0.88770 0.93984 0.93419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 8.54 37.16 0.32 -2.35 16 2 C 0.15 2.02 0.98 -90.61 -0.09 1.94 16 3 C -0.18 -1.94 8.82 37.16 0.33 -1.62 16 4 O -0.54 -8.04 11.52 -56.00 -0.64 -8.69 16 5 C -0.13 -2.02 4.96 -27.89 -0.14 -2.16 16 6 C 0.51 9.61 7.31 -10.99 -0.08 9.53 16 7 O -0.54 -11.54 13.21 -15.22 -0.20 -11.74 16 8 N -0.70 -13.17 4.07 -60.29 -0.25 -13.41 16 9 C 0.14 2.58 4.43 -4.04 -0.02 2.56 16 10 C 0.16 2.98 3.00 -67.65 -0.20 2.78 16 11 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 12 C -0.09 -1.55 5.21 -28.04 -0.15 -1.70 16 13 C -0.07 -1.21 5.76 -104.61 -0.60 -1.81 16 14 C -0.13 -2.01 9.59 -39.43 -0.38 -2.39 16 15 C -0.14 -2.07 10.04 -39.70 -0.40 -2.47 16 16 C -0.13 -1.99 10.05 -39.67 -0.40 -2.39 16 17 C -0.12 -2.15 9.62 -39.46 -0.38 -2.53 16 18 C -0.08 -1.50 5.82 -104.56 -0.61 -2.11 16 19 C 0.21 4.59 4.81 -5.03 -0.02 4.56 16 20 N -0.59 -12.97 2.86 -166.38 -0.48 -13.45 16 21 C -0.24 -5.83 7.06 -15.06 -0.11 -5.94 16 22 H 0.07 1.77 6.18 -52.49 -0.32 1.44 16 23 C 0.01 0.17 5.04 -17.43 -0.09 0.09 16 24 N -0.91 -23.37 11.15 55.49 0.62 -22.75 16 25 Si 0.90 20.36 29.57 -169.99 -5.03 15.33 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.08 1.50 6.01 -51.93 -0.31 1.19 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.37 3.89 9.05 45.56 0.41 4.31 16 36 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 37 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.41 8.07 7.47 -40.82 -0.31 7.77 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.29 7.25 -51.93 -0.38 0.92 16 41 H 0.06 0.93 8.10 -51.93 -0.42 0.50 16 42 H 0.07 1.30 8.03 -51.93 -0.42 0.88 16 43 H 0.11 1.49 8.05 -52.48 -0.42 1.07 16 44 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 45 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 46 H 0.12 1.90 8.05 -52.49 -0.42 1.48 16 47 H 0.09 2.33 6.50 -51.93 -0.34 1.99 16 48 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 49 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -28.62 385.31 -10.32 -38.94 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -7.13 Total: 15.96 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -3.01 Total: -6.00 kcal Atomic # 7 Polarization: -49.51 SS G_CDS: -0.10 Total: -49.62 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.85 Total: -20.43 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.03 Total: 15.33 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.62 -10.32 -38.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724894460.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.480 kcal (2) G-P(sol) polarization free energy of solvation -28.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds