Wall clock time and date at job start Tue Mar 31 2020 17:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46865 * 2 1 4 4 O 1.42895 * 109.47497 * 240.00083 * 2 1 3 5 5 C 1.53003 * 109.47054 * 119.99906 * 2 1 3 6 6 C 1.50691 * 109.47006 * 63.09421 * 5 2 1 7 7 O 1.21288 * 120.00415 * 6.09078 * 6 5 2 8 8 N 1.34782 * 119.99874 * 186.09287 * 6 5 2 9 9 C 1.46504 * 119.99728 * 180.02562 * 8 6 5 10 10 C 1.53004 * 109.46694 * 180.02562 * 9 8 6 11 11 H 1.09001 * 109.75702 * 295.72274 * 10 9 8 12 12 C 1.52784 * 109.76701 * 174.99665 * 10 9 8 13 13 C 1.50595 * 110.85830 * 192.86962 * 12 10 9 14 14 C 1.38977 * 117.63468 * 199.91811 * 13 12 10 15 15 C 1.37900 * 120.58208 * 181.20021 * 14 13 12 16 16 C 1.38264 * 119.82784 * 359.97438 * 15 14 13 17 17 C 1.37963 * 119.71952 * 359.73281 * 16 15 14 18 18 C 1.37666 * 122.84462 * 20.57376 * 13 12 10 19 19 C 1.50808 * 122.33791 * 357.85350 * 18 13 12 20 20 N 1.46704 * 109.67046 * 12.06206 * 19 18 13 21 21 C 1.36941 * 121.34471 * 135.51729 * 20 19 18 22 22 H 1.08002 * 119.99772 * 207.98292 * 21 20 19 23 23 C 1.38818 * 120.00025 * 27.98404 * 21 20 19 24 24 N 1.31611 * 120.00061 * 12.50853 * 23 21 20 25 25 Si 1.86800 * 119.99691 * 192.50501 * 23 21 20 26 26 H 1.48498 * 109.47110 * 60.00110 * 25 23 21 27 27 H 1.48501 * 109.46601 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47283 * 300.00152 * 25 23 21 29 29 H 1.09000 * 109.47164 * 300.00140 * 1 2 3 30 30 H 1.09002 * 109.46941 * 59.99974 * 1 2 3 31 31 H 1.08994 * 109.46821 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46879 * 184.19855 * 3 2 1 33 33 H 1.08995 * 109.46951 * 304.19863 * 3 2 1 34 34 H 1.09002 * 109.47183 * 64.20261 * 3 2 1 35 35 H 0.96697 * 114.00319 * 59.99310 * 4 2 1 36 36 H 1.09003 * 109.46903 * 303.09642 * 5 2 1 37 37 H 1.08992 * 109.47005 * 183.09957 * 5 2 1 38 38 H 0.96996 * 119.99694 * 359.97438 * 8 6 5 39 39 H 1.08990 * 109.47831 * 59.99665 * 9 8 6 40 40 H 1.08997 * 109.46749 * 299.98936 * 9 8 6 41 41 H 1.09000 * 109.19975 * 72.51160 * 12 10 9 42 42 H 1.08999 * 109.20027 * 313.23029 * 12 10 9 43 43 H 1.08004 * 119.70700 * 1.47707 * 14 13 12 44 44 H 1.08003 * 120.08785 * 179.97438 * 15 14 13 45 45 H 1.08000 * 120.14104 * 179.75590 * 16 15 14 46 46 H 1.07992 * 119.75072 * 180.02562 * 17 16 15 47 47 H 1.09001 * 109.43941 * 132.05959 * 19 18 13 48 48 H 1.09001 * 109.44036 * 251.93583 * 19 18 13 49 49 H 0.97001 * 120.00467 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0064 -0.6736 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 1.6013 -2.1624 1.2115 7 8 1.0416 -2.6005 0.2287 8 7 1.8307 -2.9646 2.2700 9 6 1.4047 -4.3658 2.2331 10 6 1.7816 -5.0483 3.5496 11 1 2.8661 -5.0703 3.6559 12 6 1.2314 -6.4735 3.5688 13 6 1.3094 -7.0598 4.9538 14 6 1.2568 -8.4435 5.0719 15 6 1.2984 -9.0438 6.3127 16 6 1.3939 -8.2645 7.4508 17 6 1.4525 -6.8909 7.3363 18 6 1.4158 -6.2858 6.0873 19 6 1.5107 -4.7817 6.0312 20 7 1.1843 -4.3165 4.6787 21 6 0.3580 -3.2437 4.4744 22 1 -0.2263 -3.1769 3.5686 23 6 0.2713 -2.2422 5.4317 24 7 1.1501 -2.1891 6.4100 25 14 -1.0925 -0.9697 5.3313 26 1 -2.4105 -1.6500 5.4035 27 1 -0.9649 -0.0171 6.4633 28 1 -0.9865 -0.2308 4.0475 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1274 1.4435 -0.0752 33 1 1.6165 1.9776 -0.8499 34 1 1.7394 1.9342 0.9253 35 1 1.7211 -0.2702 -1.9979 36 1 1.6320 -0.2404 2.1384 37 1 3.1285 -0.6734 1.2775 38 1 2.2786 -2.6144 3.0559 39 1 1.8989 -4.8743 1.4053 40 1 0.3244 -4.4136 2.0959 41 1 1.8128 -7.0914 2.8846 42 1 0.1913 -6.4607 3.2430 43 1 1.1871 -9.0542 4.1839 44 1 1.2565 -10.1198 6.3953 45 1 1.4229 -8.7292 8.4254 46 1 1.5275 -6.2818 8.2249 47 1 0.8084 -4.3472 6.7426 48 1 2.5239 -4.4723 6.2875 49 1 1.0894 -1.4895 7.0792 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724894460.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:07:58 Heat of formation + Delta-G solvation = -62.763960 kcal Electronic energy + Delta-G solvation = -29743.450030 eV Core-core repulsion = 25862.845131 eV Total energy + Delta-G solvation = -3880.604900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.04283 -40.52031 -38.72320 -37.81662 -35.23536 -34.45135 -33.60373 -32.95843 -31.79415 -30.60625 -29.24033 -28.18162 -27.34456 -26.41528 -24.53404 -22.89351 -22.66550 -21.74666 -20.88939 -20.51211 -18.54288 -17.81648 -17.63760 -17.18734 -16.98356 -16.64823 -16.20732 -16.03859 -15.80877 -15.72194 -15.31029 -15.07228 -14.85550 -14.57283 -14.25762 -14.05287 -13.91559 -13.75562 -13.66583 -13.25986 -13.20811 -13.02913 -12.81191 -12.71713 -12.66229 -12.58593 -12.51957 -12.32234 -12.26181 -12.15793 -11.85924 -11.71616 -11.60363 -11.28433 -10.93263 -10.63490 -10.42440 -9.70960 -9.53673 -9.26322 -8.65604 -7.84896 -5.28711 0.58782 0.62795 1.42450 1.47806 1.51607 1.91264 2.45854 2.54585 2.98498 3.33067 3.35902 3.52037 3.80750 3.86140 3.93204 4.08903 4.11207 4.23826 4.24655 4.31821 4.40450 4.43712 4.53020 4.61280 4.64610 4.70174 4.72352 4.72840 4.83366 4.87326 4.92109 4.93147 4.95292 5.18152 5.20064 5.21148 5.23411 5.27376 5.42396 5.45645 5.51005 5.68311 5.70666 5.75072 5.79104 6.01863 6.27942 6.37179 6.84663 7.03009 7.16175 7.53365 7.82045 8.38742 9.22325 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.003777 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.497743 B = 7411.515369 C = 8789.739947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.144 3.856 3 C -0.170 4.170 4 O -0.563 6.563 5 C -0.132 4.132 6 C 0.507 3.493 7 O -0.570 6.570 8 N -0.702 5.702 9 C 0.146 3.854 10 C 0.160 3.840 11 H 0.040 0.960 12 C -0.084 4.084 13 C -0.084 4.084 14 C -0.128 4.128 15 C -0.131 4.131 16 C -0.127 4.127 17 C -0.137 4.137 18 C -0.109 4.109 19 C 0.224 3.776 20 N -0.598 5.598 21 C -0.230 4.230 22 H 0.062 0.938 23 C -0.032 4.032 24 N -0.927 5.927 25 Si 0.940 3.060 26 H -0.294 1.294 27 H -0.294 1.294 28 H -0.272 1.272 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.383 0.617 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.409 0.591 39 H 0.070 0.930 40 H 0.044 0.956 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.140 0.860 44 H 0.149 0.851 45 H 0.143 0.857 46 H 0.115 0.885 47 H 0.059 0.941 48 H 0.015 0.985 49 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.087 -2.490 -6.355 7.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.103 3.897 3 C -0.227 4.227 4 O -0.370 6.370 5 C -0.172 4.172 6 C 0.294 3.706 7 O -0.451 6.451 8 N -0.353 5.353 9 C 0.021 3.979 10 C 0.054 3.946 11 H 0.058 0.942 12 C -0.123 4.123 13 C -0.084 4.084 14 C -0.146 4.146 15 C -0.149 4.149 16 C -0.145 4.145 17 C -0.156 4.156 18 C -0.110 4.110 19 C 0.098 3.902 20 N -0.322 5.322 21 C -0.360 4.360 22 H 0.079 0.921 23 C -0.228 4.228 24 N -0.573 5.573 25 Si 0.770 3.230 26 H -0.221 1.221 27 H -0.220 1.220 28 H -0.198 1.198 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.232 0.768 36 H 0.123 0.877 37 H 0.127 0.873 38 H 0.245 0.755 39 H 0.088 0.912 40 H 0.062 0.938 41 H 0.112 0.888 42 H 0.085 0.915 43 H 0.157 0.843 44 H 0.166 0.834 45 H 0.161 0.839 46 H 0.133 0.867 47 H 0.077 0.923 48 H 0.033 0.967 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.970 -3.039 -6.481 7.749 hybrid contribution -0.970 1.443 0.584 1.835 sum 2.000 -1.595 -5.896 6.427 Atomic orbital electron populations 1.22560 0.96310 1.02484 1.02533 1.20835 0.92482 0.91401 0.84966 1.22435 1.02324 0.94272 1.03710 1.86639 1.76571 1.57874 1.15949 1.21817 1.03985 0.91993 0.99383 1.20828 0.78802 0.88861 0.82129 1.90602 1.43930 1.76871 1.33676 1.45982 1.59927 1.11109 1.18257 1.21100 0.98784 0.81749 0.96243 1.20815 0.95486 0.91227 0.87115 0.94202 1.20818 1.01674 0.96310 0.93544 1.19657 1.00229 0.93822 0.94708 1.21435 1.00797 0.93404 0.98935 1.21327 1.00662 1.00835 0.92049 1.21311 1.00391 0.92920 0.99857 1.21233 1.01829 0.95919 0.96595 1.20783 0.98831 0.97684 0.93694 1.19325 0.97422 0.85998 0.87426 1.44152 1.54668 1.33088 1.00249 1.19050 1.15942 0.96544 1.04492 0.92083 1.25452 0.99440 0.98784 0.99152 1.70079 1.35743 1.35055 1.16445 0.85758 0.80224 0.79807 0.77186 1.22098 1.22006 1.19809 0.92422 0.90597 0.93213 0.91266 0.90364 0.91098 0.76832 0.87739 0.87348 0.75509 0.91232 0.93773 0.88820 0.91488 0.84257 0.83369 0.83909 0.86672 0.92311 0.96720 0.94115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.11 8.54 71.98 0.61 -4.50 16 2 C 0.14 3.84 0.98 -10.79 -0.01 3.83 16 3 C -0.17 -3.27 8.82 71.98 0.63 -2.64 16 4 O -0.56 -16.01 11.52 -129.12 -1.49 -17.50 16 5 C -0.13 -4.03 4.96 29.85 0.15 -3.88 16 6 C 0.51 19.21 7.31 87.65 0.64 19.86 16 7 O -0.57 -24.48 13.21 16.81 0.22 -24.26 16 8 N -0.70 -27.01 4.07 -463.06 -1.88 -28.89 16 9 C 0.15 5.48 4.43 86.38 0.38 5.86 16 10 C 0.16 6.11 3.00 44.79 0.13 6.24 16 11 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 12 C -0.08 -2.81 5.21 29.74 0.16 -2.65 16 13 C -0.08 -2.93 5.76 -19.86 -0.11 -3.04 16 14 C -0.13 -3.60 9.59 22.37 0.21 -3.39 16 15 C -0.13 -3.32 10.04 22.20 0.22 -3.10 16 16 C -0.13 -3.50 10.05 22.21 0.22 -3.28 16 17 C -0.14 -4.73 9.62 22.35 0.22 -4.51 16 18 C -0.11 -4.28 5.82 -19.82 -0.12 -4.39 16 19 C 0.22 10.41 4.81 85.63 0.41 10.82 16 20 N -0.60 -27.39 2.86 -680.31 -1.95 -29.34 16 21 C -0.23 -11.45 7.06 84.03 0.59 -10.86 16 22 H 0.06 3.15 6.18 -2.91 -0.02 3.13 16 23 C -0.03 -1.65 5.04 84.86 0.43 -1.22 16 24 N -0.93 -49.97 11.15 21.65 0.24 -49.72 16 25 Si 0.94 42.87 29.57 68.60 2.03 44.89 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 27 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 28 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.76 6.01 -2.39 -0.01 1.75 16 32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.38 7.51 9.05 -74.06 -0.67 6.84 16 36 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 37 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 38 H 0.41 16.46 7.47 -92.71 -0.69 15.76 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 40 H 0.04 1.83 7.25 -2.39 -0.02 1.82 16 41 H 0.09 2.52 8.10 -2.39 -0.02 2.50 16 42 H 0.07 2.32 8.03 -2.39 -0.02 2.30 16 43 H 0.14 3.12 8.05 -2.91 -0.02 3.09 16 44 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 45 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 46 H 0.12 3.86 8.05 -2.91 -0.02 3.84 16 47 H 0.06 3.10 6.50 -2.39 -0.02 3.08 16 48 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.25 13.31 8.31 -92.71 -0.77 12.54 16 Total: -1.00 -64.24 385.31 1.55 -62.69 By element: Atomic # 1 Polarization: 43.39 SS G_CDS: -0.40 Total: 42.98 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 4.78 Total: -0.85 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -3.59 Total: -107.95 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -1.27 Total: -41.76 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -64.24 1.55 -62.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724894460.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.073 kcal (2) G-P(sol) polarization free energy of solvation -64.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds