Wall clock time and date at job start Tue Mar 31 2020 16:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46899 * 2 1 4 4 C 1.50702 * 109.46865 * 180.02562 * 3 2 1 5 5 O 1.21281 * 120.00183 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99922 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00012 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.47280 * 180.02562 * 7 6 4 9 9 C 1.53934 * 113.73278 * 271.72889 * 8 7 6 10 10 N 1.47963 * 86.17978 * 221.91881 * 9 8 7 11 11 C 1.46902 * 110.99605 * 137.58307 * 10 9 8 12 12 C 1.50696 * 109.47364 * 90.63999 * 11 10 9 13 13 C 1.38302 * 119.93077 * 269.72905 * 12 11 10 14 14 C 1.38104 * 120.06777 * 179.72758 * 13 12 11 15 15 C 1.38881 * 119.93053 * 0.51556 * 14 13 12 16 16 O 1.35747 * 120.07321 * 179.73170 * 15 14 13 17 17 C 1.34829 * 117.00471 * 174.48724 * 16 15 14 18 18 H 1.07995 * 119.99569 * 5.05626 * 17 16 15 19 19 C 1.38649 * 119.99899 * 185.05505 * 17 16 15 20 20 N 1.31551 * 120.00398 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99825 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47016 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46816 * 120.00166 * 21 19 17 24 24 H 1.48495 * 109.47510 * 240.00073 * 21 19 17 25 25 C 1.38889 * 119.86267 * 359.75244 * 15 14 13 26 26 C 1.38104 * 119.92698 * 0.02562 * 25 15 14 27 27 C 1.47960 * 90.76172 * 24.69259 * 10 9 8 28 28 H 1.09004 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47113 * 300.00082 * 1 2 3 30 30 H 1.09008 * 109.46955 * 60.00293 * 1 2 3 31 31 H 1.09002 * 109.47204 * 240.00088 * 2 1 3 32 32 H 1.08995 * 109.47002 * 120.00023 * 2 1 3 33 33 H 1.08992 * 109.47306 * 60.00035 * 3 2 1 34 34 H 1.08995 * 109.47312 * 299.99833 * 3 2 1 35 35 H 0.97003 * 120.00078 * 0.02562 * 6 4 3 36 36 H 1.09002 * 109.47124 * 60.00166 * 7 6 4 37 37 H 1.09004 * 109.47331 * 300.00133 * 7 6 4 38 38 H 1.09004 * 112.93884 * 43.43423 * 8 7 6 39 39 H 1.08999 * 113.75650 * 336.23663 * 9 8 7 40 40 H 1.09004 * 113.76008 * 107.59864 * 9 8 7 41 41 H 1.09006 * 109.46706 * 210.63914 * 11 10 9 42 42 H 1.08993 * 109.47324 * 330.63825 * 11 10 9 43 43 H 1.07995 * 119.96628 * 359.97208 * 13 12 11 44 44 H 1.07991 * 120.03330 * 180.27018 * 14 13 12 45 45 H 0.97003 * 120.00748 * 179.97438 * 20 19 17 46 46 H 1.07990 * 120.03565 * 179.97438 * 25 15 14 47 47 H 1.08001 * 119.96098 * 179.97438 * 26 25 15 48 48 H 1.09004 * 113.75165 * 220.99834 * 27 10 9 49 49 H 1.09000 * 113.76359 * 89.62860 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2209 2.6097 -0.0013 7 6 5.6858 2.6097 -0.0013 8 6 6.1959 4.0523 -0.0014 9 6 6.3623 4.6504 -1.4100 10 7 7.6289 5.2272 -0.9077 11 6 8.7001 5.0928 -1.9040 12 6 8.7215 6.3141 -2.7865 13 6 7.9688 6.3406 -3.9465 14 6 7.9819 7.4605 -4.7544 15 6 8.7604 8.5568 -4.4066 16 8 8.7797 9.6570 -5.2015 17 6 9.4644 10.7269 -4.7495 18 1 10.0329 10.6567 -3.8340 19 6 9.4385 11.9173 -5.4600 20 7 8.7456 12.0030 -6.5749 21 14 10.3865 13.3998 -4.8332 22 1 11.0786 13.0461 -3.5678 23 1 11.3902 13.8106 -5.8478 24 1 9.4450 14.5213 -4.5862 25 6 9.5195 8.5250 -3.2440 26 6 9.4985 7.4038 -2.4379 27 6 7.7259 4.1684 0.1213 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9564 -0.8899 35 1 3.7358 3.4498 -0.0009 36 1 6.0491 2.0955 -0.8911 37 1 6.0493 2.0963 0.8889 38 1 5.6503 4.6958 0.6887 39 1 6.4995 3.9028 -2.1912 40 1 5.6091 5.3971 -1.6619 41 1 9.6592 4.9952 -1.3953 42 1 8.5203 4.2072 -2.5135 43 1 7.3670 5.4861 -4.2187 44 1 7.3906 7.4823 -5.6578 45 1 8.7272 12.8358 -7.0718 46 1 10.1262 9.3757 -2.9711 47 1 10.0889 7.3783 -1.5339 48 1 8.0623 4.5301 1.0930 49 1 8.2620 3.2798 -0.2120 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001391469502.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:10 Heat of formation + Delta-G solvation = -19.502751 kcal Electronic energy + Delta-G solvation = -26837.672877 eV Core-core repulsion = 22958.943924 eV Total energy + Delta-G solvation = -3878.728953 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.54827 -39.72640 -38.86713 -36.58865 -35.21012 -34.65831 -32.47738 -31.65720 -30.16291 -29.47938 -27.95922 -26.36276 -25.96504 -25.07459 -22.84411 -22.04028 -21.94104 -20.80893 -20.30539 -19.73359 -17.96964 -17.42316 -16.94148 -16.59911 -16.36079 -15.84888 -15.34613 -15.14788 -14.81749 -14.56940 -14.40771 -14.08911 -14.02286 -13.59614 -13.49073 -13.44699 -13.07677 -12.89784 -12.74523 -12.59988 -12.34981 -12.18640 -11.78177 -11.74526 -11.66737 -11.56855 -11.26958 -11.14894 -11.10144 -10.93511 -10.74879 -10.55625 -10.48438 -10.39686 -10.11806 -9.41642 -9.31781 -8.86301 -8.78127 -8.15914 -7.16543 -6.44786 -4.03504 2.23346 2.30112 2.33150 2.82105 3.12088 3.13916 3.19447 3.83465 3.96990 4.13082 4.37214 4.40868 4.48721 4.58661 4.60522 4.88309 5.00223 5.02020 5.07376 5.08431 5.13386 5.19703 5.21422 5.28062 5.32207 5.34776 5.38586 5.42166 5.55509 5.64764 5.64896 5.72731 5.74472 5.78154 5.84256 5.90070 5.94964 6.11971 6.18933 6.28634 6.46379 6.70900 6.92709 6.96698 7.09391 7.14568 7.25829 7.41906 7.45583 7.84046 7.89780 8.00609 9.01168 9.71619 10.73398 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.020880 B = 0.001690 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.649119 B =16568.365217 C =17282.146420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.142 4.142 4 C 0.510 3.490 5 O -0.543 6.543 6 N -0.730 5.730 7 C 0.127 3.873 8 C -0.131 4.131 9 C 0.011 3.989 10 N -0.469 5.469 11 C 0.079 3.921 12 C -0.175 4.175 13 C -0.067 4.067 14 C -0.193 4.193 15 C 0.155 3.845 16 O -0.179 6.179 17 C -0.391 4.391 18 H 0.092 0.908 19 C 0.039 3.961 20 N -0.863 5.863 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.234 4.234 26 C -0.052 4.052 27 C 0.009 3.991 28 H 0.057 0.943 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.403 0.597 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.043 0.957 43 H 0.105 0.895 44 H 0.115 0.885 45 H 0.269 0.731 46 H 0.126 0.874 47 H 0.105 0.895 48 H 0.090 0.910 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.824 -18.862 14.686 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.182 4.182 4 C 0.296 3.704 5 O -0.420 6.420 6 N -0.382 5.382 7 C 0.003 3.997 8 C -0.150 4.150 9 C -0.118 4.118 10 N -0.191 5.191 11 C -0.049 4.049 12 C -0.176 4.176 13 C -0.085 4.085 14 C -0.213 4.213 15 C 0.101 3.899 16 O -0.083 6.083 17 C -0.467 4.467 18 H 0.110 0.890 19 C -0.165 4.165 20 N -0.498 5.498 21 Si 0.765 3.235 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.201 1.201 25 C -0.253 4.253 26 C -0.071 4.071 27 C -0.121 4.121 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.237 0.763 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.090 0.910 42 H 0.061 0.939 43 H 0.123 0.877 44 H 0.133 0.867 45 H 0.079 0.921 46 H 0.144 0.856 47 H 0.123 0.877 48 H 0.108 0.892 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.456 -18.698 14.457 25.845 hybrid contribution 0.387 0.510 -0.030 0.641 sum -10.069 -18.189 14.427 25.305 Atomic orbital electron populations 1.21800 0.95414 1.02030 1.01848 1.21279 0.95317 0.94631 1.03543 1.21735 0.91603 1.00326 1.04511 1.20820 0.90451 0.83513 0.75569 1.90710 1.70632 1.31379 1.49321 1.46067 1.07461 1.08860 1.75834 1.21419 0.79598 0.96261 1.02388 1.23289 0.97330 0.95297 0.99064 1.24066 0.94730 0.97999 0.95003 1.68659 1.02548 1.38933 1.08990 1.21360 0.95255 0.95331 0.92905 1.18990 1.04590 0.96633 0.97384 1.20430 0.97644 0.96468 0.93994 1.20161 1.04798 0.93552 1.02762 1.19388 0.92492 0.88467 0.89539 1.83974 1.64771 1.18787 1.40745 1.21376 1.27799 0.87862 1.09677 0.89020 1.25283 0.97414 0.98129 0.95705 1.70045 1.38441 1.27041 1.14312 0.85652 0.78860 0.80144 0.78799 1.19094 1.20166 1.20145 1.21156 1.06116 1.00165 0.97902 1.20549 0.96925 0.92319 0.97337 1.23907 0.94426 0.94976 0.98762 0.92381 0.92667 0.92598 0.91242 0.91305 0.88877 0.88776 0.76312 0.91376 0.91238 0.87666 0.91186 0.89284 0.90958 0.93898 0.87697 0.86678 0.92102 0.85619 0.87666 0.89151 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.37 16 2 C -0.11 -0.72 5.22 -26.73 -0.14 -0.86 16 3 C -0.14 -0.79 5.70 -27.88 -0.16 -0.95 16 4 C 0.51 4.49 7.83 -10.99 -0.09 4.40 16 5 O -0.54 -7.08 15.98 5.56 0.09 -6.99 16 6 N -0.73 -5.10 5.56 -60.29 -0.33 -5.43 16 7 C 0.13 1.00 5.53 -4.04 -0.02 0.97 16 8 C -0.13 -1.00 3.94 -89.69 -0.35 -1.36 16 9 C 0.01 0.11 7.51 -2.77 -0.02 0.09 16 10 N -0.47 -5.61 6.14 -239.73 -1.47 -7.09 16 11 C 0.08 1.04 4.92 -4.98 -0.02 1.01 16 12 C -0.17 -2.97 5.44 -104.58 -0.57 -3.54 16 13 C -0.07 -1.18 9.69 -39.61 -0.38 -1.57 16 14 C -0.19 -4.11 9.99 -39.39 -0.39 -4.50 16 15 C 0.15 3.77 6.65 -39.10 -0.26 3.51 16 16 O -0.18 -5.16 9.76 0.06 0.00 -5.16 16 17 C -0.39 -10.98 9.49 30.88 0.29 -10.69 16 18 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -25.37 13.67 55.48 0.76 -24.61 16 21 Si 0.94 20.57 29.55 -169.99 -5.02 15.55 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 C -0.23 -5.14 9.17 -39.39 -0.36 -5.50 16 26 C -0.05 -0.98 9.69 -39.61 -0.38 -1.36 16 27 C 0.01 0.08 7.51 -2.77 -0.02 0.06 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.24 8.14 -51.92 -0.42 -0.18 16 31 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.40 1.85 8.47 -40.82 -0.35 1.51 16 36 H 0.07 0.62 7.84 -51.93 -0.41 0.21 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.68 7.23 -51.93 -0.38 0.31 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.89 8.02 -51.93 -0.42 0.48 16 42 H 0.04 0.52 7.32 -51.93 -0.38 0.14 16 43 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 44 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 45 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.13 2.78 5.64 -52.49 -0.30 2.48 16 47 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 48 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.07 0.57 7.88 -51.93 -0.41 0.16 16 LS Contribution 405.23 15.07 6.11 6.11 Total: -1.00 -33.47 405.23 -10.44 -43.91 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -7.95 Total: 3.39 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -2.61 Total: -19.67 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: -1.05 Total: -37.14 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.47 -10.44 -43.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001391469502.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.405 kcal (2) G-P(sol) polarization free energy of solvation -33.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds