Wall clock time and date at job start Tue Mar 31 2020 16:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46899 * 2 1 4 4 C 1.50702 * 109.46865 * 180.02562 * 3 2 1 5 5 O 1.21281 * 120.00183 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99922 * 179.97438 * 4 3 2 7 7 C 1.46498 * 120.00012 * 179.97438 * 6 4 3 8 8 C 1.53003 * 109.47280 * 180.02562 * 7 6 4 9 9 C 1.53934 * 113.73278 * 271.72889 * 8 7 6 10 10 N 1.47963 * 86.17978 * 221.91881 * 9 8 7 11 11 C 1.46902 * 110.99605 * 137.58307 * 10 9 8 12 12 C 1.50696 * 109.47364 * 90.63999 * 11 10 9 13 13 C 1.38302 * 119.93077 * 269.72905 * 12 11 10 14 14 C 1.38104 * 120.06777 * 179.72758 * 13 12 11 15 15 C 1.38881 * 119.93053 * 0.51556 * 14 13 12 16 16 O 1.35747 * 120.07321 * 179.73170 * 15 14 13 17 17 C 1.34829 * 117.00471 * 174.48724 * 16 15 14 18 18 H 1.07995 * 119.99569 * 5.05626 * 17 16 15 19 19 C 1.38649 * 119.99899 * 185.05505 * 17 16 15 20 20 N 1.31551 * 120.00398 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99825 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47016 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46816 * 120.00166 * 21 19 17 24 24 H 1.48495 * 109.47510 * 240.00073 * 21 19 17 25 25 C 1.38889 * 119.86267 * 359.75244 * 15 14 13 26 26 C 1.38104 * 119.92698 * 0.02562 * 25 15 14 27 27 C 1.47960 * 90.76172 * 24.69259 * 10 9 8 28 28 H 1.09004 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47113 * 300.00082 * 1 2 3 30 30 H 1.09008 * 109.46955 * 60.00293 * 1 2 3 31 31 H 1.09002 * 109.47204 * 240.00088 * 2 1 3 32 32 H 1.08995 * 109.47002 * 120.00023 * 2 1 3 33 33 H 1.08992 * 109.47306 * 60.00035 * 3 2 1 34 34 H 1.08995 * 109.47312 * 299.99833 * 3 2 1 35 35 H 0.97003 * 120.00078 * 0.02562 * 6 4 3 36 36 H 1.09002 * 109.47124 * 60.00166 * 7 6 4 37 37 H 1.09004 * 109.47331 * 300.00133 * 7 6 4 38 38 H 1.09004 * 112.93884 * 43.43423 * 8 7 6 39 39 H 1.08999 * 113.75650 * 336.23663 * 9 8 7 40 40 H 1.09004 * 113.76008 * 107.59864 * 9 8 7 41 41 H 1.09006 * 109.46706 * 210.63914 * 11 10 9 42 42 H 1.08993 * 109.47324 * 330.63825 * 11 10 9 43 43 H 1.07995 * 119.96628 * 359.97208 * 13 12 11 44 44 H 1.07991 * 120.03330 * 180.27018 * 14 13 12 45 45 H 0.97003 * 120.00748 * 179.97438 * 20 19 17 46 46 H 1.07990 * 120.03565 * 179.97438 * 25 15 14 47 47 H 1.08001 * 119.96098 * 179.97438 * 26 25 15 48 48 H 1.09004 * 113.75165 * 220.99834 * 27 10 9 49 49 H 1.09000 * 113.76359 * 89.62860 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0006 6 7 4.2209 2.6097 -0.0013 7 6 5.6858 2.6097 -0.0013 8 6 6.1959 4.0523 -0.0014 9 6 6.3623 4.6504 -1.4100 10 7 7.6289 5.2272 -0.9077 11 6 8.7001 5.0928 -1.9040 12 6 8.7215 6.3141 -2.7865 13 6 7.9688 6.3406 -3.9465 14 6 7.9819 7.4605 -4.7544 15 6 8.7604 8.5568 -4.4066 16 8 8.7797 9.6570 -5.2015 17 6 9.4644 10.7269 -4.7495 18 1 10.0329 10.6567 -3.8340 19 6 9.4385 11.9173 -5.4600 20 7 8.7456 12.0030 -6.5749 21 14 10.3865 13.3998 -4.8332 22 1 11.0786 13.0461 -3.5678 23 1 11.3902 13.8106 -5.8478 24 1 9.4450 14.5213 -4.5862 25 6 9.5195 8.5250 -3.2440 26 6 9.4985 7.4038 -2.4379 27 6 7.7259 4.1684 0.1213 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.6767 1.9564 0.8899 34 1 1.6767 1.9564 -0.8899 35 1 3.7358 3.4498 -0.0009 36 1 6.0491 2.0955 -0.8911 37 1 6.0493 2.0963 0.8889 38 1 5.6503 4.6958 0.6887 39 1 6.4995 3.9028 -2.1912 40 1 5.6091 5.3971 -1.6619 41 1 9.6592 4.9952 -1.3953 42 1 8.5203 4.2072 -2.5135 43 1 7.3670 5.4861 -4.2187 44 1 7.3906 7.4823 -5.6578 45 1 8.7272 12.8358 -7.0718 46 1 10.1262 9.3757 -2.9711 47 1 10.0889 7.3783 -1.5339 48 1 8.0623 4.5301 1.0930 49 1 8.2620 3.2798 -0.2120 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001391469502.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:09 Heat of formation + Delta-G solvation = -42.899410 kcal Electronic energy + Delta-G solvation = -26838.687433 eV Core-core repulsion = 22958.943924 eV Total energy + Delta-G solvation = -3879.743508 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.36641 -40.73188 -40.30690 -38.25377 -35.90859 -35.22690 -34.36459 -32.90713 -31.78017 -30.43151 -28.76478 -27.55291 -27.04908 -26.45378 -23.83283 -23.59089 -22.65275 -21.77709 -21.41392 -20.43304 -19.81452 -18.83788 -18.02620 -17.31120 -16.97722 -16.63779 -16.54759 -16.41939 -16.12837 -15.74292 -15.65650 -15.47571 -15.20336 -14.77026 -14.71055 -14.43818 -14.20379 -13.95821 -13.83169 -13.63305 -13.49475 -13.08048 -12.88385 -12.81655 -12.68242 -12.59263 -12.41130 -12.18994 -12.11043 -12.01123 -12.00029 -11.69437 -11.61919 -11.49758 -11.15991 -10.86369 -10.77595 -10.08082 -9.77285 -9.67314 -8.89361 -8.47102 -6.15182 0.60910 0.69557 1.34967 1.43158 1.53328 1.67658 2.17745 2.24332 2.76119 3.03244 3.27137 3.44342 3.52670 3.74604 3.85174 3.97845 4.03696 4.07221 4.13796 4.19208 4.25017 4.33303 4.42684 4.49769 4.57682 4.61169 4.62295 4.70559 4.73138 4.74864 4.78498 4.79583 4.88552 4.91536 4.94597 5.09224 5.15137 5.22833 5.27787 5.27968 5.28944 5.43495 5.45427 5.52274 5.60899 5.72978 5.84706 6.03395 6.12129 6.25260 6.58504 6.97844 7.29164 7.78999 8.76418 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.020880 B = 0.001690 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.649119 B =16568.365217 C =17282.146420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.135 4.135 4 C 0.504 3.496 5 O -0.592 6.592 6 N -0.720 5.720 7 C 0.133 3.867 8 C -0.109 4.109 9 C 0.006 3.994 10 N -0.493 5.493 11 C 0.081 3.919 12 C -0.148 4.148 13 C -0.059 4.059 14 C -0.204 4.204 15 C 0.112 3.888 16 O -0.234 6.234 17 C -0.413 4.413 18 H 0.100 0.900 19 C -0.023 4.023 20 N -0.921 5.921 21 Si 1.019 2.981 22 H -0.252 1.252 23 H -0.268 1.268 24 H -0.268 1.268 25 C -0.243 4.243 26 C -0.054 4.054 27 C 0.012 3.988 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.416 0.584 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.115 0.885 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.141 0.859 44 H 0.111 0.889 45 H 0.272 0.728 46 H 0.116 0.884 47 H 0.135 0.865 48 H 0.098 0.902 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.186 -20.114 17.358 28.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C -0.175 4.175 4 C 0.293 3.707 5 O -0.473 6.473 6 N -0.372 5.372 7 C 0.008 3.992 8 C -0.128 4.128 9 C -0.122 4.122 10 N -0.215 5.215 11 C -0.047 4.047 12 C -0.149 4.149 13 C -0.078 4.078 14 C -0.224 4.224 15 C 0.062 3.938 16 O -0.141 6.141 17 C -0.489 4.489 18 H 0.118 0.882 19 C -0.220 4.220 20 N -0.559 5.559 21 Si 0.838 3.162 22 H -0.175 1.175 23 H -0.193 1.193 24 H -0.193 1.193 25 C -0.262 4.262 26 C -0.073 4.073 27 C -0.116 4.116 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.253 0.747 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.133 0.867 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.159 0.841 44 H 0.129 0.871 45 H 0.081 0.919 46 H 0.134 0.866 47 H 0.153 0.847 48 H 0.117 0.883 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.834 -19.974 17.168 28.479 hybrid contribution 0.432 0.547 -0.700 0.988 sum -10.402 -19.427 16.468 27.510 Atomic orbital electron populations 1.21767 0.93877 1.02285 1.02710 1.21255 0.96588 0.95132 1.01902 1.21769 0.89157 1.00005 1.06558 1.21406 0.91748 0.83062 0.74505 1.90691 1.71774 1.33130 1.51734 1.46007 1.07280 1.09164 1.74750 1.21299 0.80059 0.96105 1.01714 1.23108 0.96919 0.94974 0.97806 1.24135 0.93762 0.97975 0.96367 1.68584 1.02676 1.40892 1.09395 1.21382 0.96780 0.93477 0.93039 1.19563 1.01309 0.97254 0.96820 1.20816 0.97446 0.96130 0.93363 1.20425 1.04516 0.93997 1.03428 1.19933 0.94602 0.88479 0.90821 1.83935 1.66976 1.20217 1.42975 1.21849 1.28249 0.88527 1.10277 0.88226 1.26579 0.98450 1.01227 0.95773 1.70187 1.41236 1.28201 1.16323 0.84529 0.77423 0.75515 0.78727 1.17536 1.19298 1.19292 1.21247 1.05863 1.01303 0.97801 1.20892 0.97257 0.91467 0.97665 1.23983 0.95167 0.94373 0.98116 0.92536 0.91603 0.91851 0.93124 0.92849 0.86457 0.86808 0.74676 0.92488 0.91582 0.86665 0.90707 0.89951 0.89570 0.92166 0.84087 0.87055 0.91861 0.86590 0.84733 0.88318 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.91 71.98 0.71 -0.46 16 2 C -0.11 -1.35 5.22 30.60 0.16 -1.19 16 3 C -0.14 -1.21 5.70 29.85 0.17 -1.04 16 4 C 0.50 8.07 7.83 87.66 0.69 8.76 16 5 O -0.59 -15.22 15.98 -3.03 -0.05 -15.27 16 6 N -0.72 -8.25 5.56 -463.05 -2.57 -10.82 16 7 C 0.13 1.73 5.53 86.38 0.48 2.21 16 8 C -0.11 -1.29 3.94 -10.15 -0.04 -1.33 16 9 C 0.01 0.10 7.51 86.40 0.65 0.75 16 10 N -0.49 -9.88 6.14 -912.37 -5.61 -15.48 16 11 C 0.08 1.78 4.92 85.56 0.42 2.20 16 12 C -0.15 -4.60 5.44 -19.83 -0.11 -4.70 16 13 C -0.06 -1.97 9.69 22.25 0.22 -1.76 16 14 C -0.20 -8.80 9.99 22.39 0.22 -8.57 16 15 C 0.11 5.67 6.65 22.58 0.15 5.82 16 16 O -0.23 -14.34 9.76 -22.70 -0.22 -14.56 16 17 C -0.41 -24.40 9.49 67.92 0.64 -23.75 16 18 H 0.10 5.44 5.20 -2.91 -0.02 5.42 16 19 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 20 N -0.92 -56.97 13.67 21.61 0.30 -56.67 16 21 Si 1.02 43.22 29.55 68.60 2.03 45.25 16 22 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 23 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 24 H -0.27 -10.88 7.11 99.48 0.71 -10.18 16 25 C -0.24 -10.81 9.17 22.39 0.21 -10.60 16 26 C -0.05 -1.91 9.69 22.25 0.22 -1.70 16 27 C 0.01 0.17 7.51 86.41 0.65 0.82 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 32 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 33 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.42 2.49 8.47 -92.71 -0.79 1.70 16 36 H 0.06 0.91 7.84 -2.39 -0.02 0.89 16 37 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 38 H 0.12 1.20 8.14 -2.39 -0.02 1.19 16 39 H 0.07 1.18 7.23 -2.39 -0.02 1.16 16 40 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.09 1.71 8.02 -2.38 -0.02 1.70 16 42 H 0.06 1.16 7.32 -2.39 -0.02 1.14 16 43 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 44 H 0.11 4.75 8.06 -2.92 -0.02 4.73 16 45 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 46 H 0.12 5.28 5.64 -2.92 -0.02 5.26 16 47 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 48 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 49 H 0.08 0.98 7.88 -2.39 -0.02 0.96 16 Total: -1.00 -78.66 405.23 -0.07 -78.73 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.16 Total: 24.22 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 5.90 Total: -35.39 kcal Atomic # 7 Polarization: -75.09 SS G_CDS: -7.88 Total: -82.98 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.27 Total: -29.83 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -78.66 -0.07 -78.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001391469502.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.829 kcal (2) G-P(sol) polarization free energy of solvation -78.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds