Wall clock time and date at job start Tue Mar 31 2020 16:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46665 * 2 1 4 4 N 1.46506 * 109.46790 * 179.97438 * 3 2 1 5 5 C 1.36939 * 119.99839 * 272.13953 * 4 3 2 6 6 H 1.08001 * 119.99964 * 8.56384 * 5 4 3 7 7 C 1.38810 * 119.99681 * 188.57215 * 5 4 3 8 8 N 1.31622 * 120.00150 * 24.80186 * 7 5 4 9 9 Si 1.86803 * 120.00032 * 204.80389 * 7 5 4 10 10 H 1.48504 * 109.46868 * 89.99582 * 9 7 5 11 11 H 1.48493 * 109.47205 * 210.00066 * 9 7 5 12 12 H 1.48503 * 109.46659 * 330.00255 * 9 7 5 13 13 C 1.46499 * 119.99825 * 92.13701 * 4 3 2 14 14 C 1.50695 * 109.46998 * 90.00049 * 13 4 3 15 15 O 1.21283 * 120.00200 * 359.97438 * 14 13 4 16 16 N 1.34777 * 119.99987 * 179.72414 * 14 13 4 17 17 C 1.46501 * 120.00193 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.46984 * 35.00117 * 17 16 14 19 19 C 1.53001 * 109.47266 * 154.99731 * 17 16 14 20 20 C 1.50696 * 109.47085 * 295.00100 * 19 17 16 21 21 C 1.38230 * 120.00248 * 269.72315 * 20 19 17 22 22 C 1.38232 * 120.00417 * 179.76958 * 21 20 19 23 23 C 1.38239 * 119.99917 * 0.50631 * 22 21 20 24 24 C 1.38243 * 119.99664 * 359.74665 * 23 22 21 25 25 C 1.38227 * 119.99789 * 0.02562 * 24 23 22 26 26 C 1.50704 * 109.47273 * 274.99991 * 17 16 14 27 27 C 1.50694 * 120.00048 * 164.99991 * 26 17 16 28 28 O 1.20765 * 119.99359 * 344.99917 * 26 17 16 29 29 H 1.09000 * 109.47032 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47158 * 299.99552 * 1 2 3 31 31 H 1.08997 * 109.47312 * 60.00458 * 1 2 3 32 32 H 1.09002 * 109.47610 * 240.00170 * 2 1 3 33 33 H 1.08997 * 109.47312 * 119.99542 * 2 1 3 34 34 H 1.09001 * 109.46967 * 60.00331 * 3 2 1 35 35 H 1.08997 * 109.46881 * 299.99806 * 3 2 1 36 36 H 0.97000 * 119.99878 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.47123 * 329.99564 * 13 4 3 38 38 H 1.09002 * 109.46561 * 209.99745 * 13 4 3 39 39 H 0.97005 * 119.99755 * 359.97438 * 16 14 13 40 40 H 1.09005 * 109.46858 * 55.00012 * 19 17 16 41 41 H 1.09003 * 109.46997 * 174.99971 * 19 17 16 42 42 H 1.08000 * 120.00023 * 0.02562 * 21 20 19 43 43 H 1.08005 * 120.00371 * 180.23498 * 22 21 20 44 44 H 1.07996 * 120.00501 * 179.72960 * 23 22 21 45 45 H 1.07992 * 119.99757 * 179.97438 * 24 23 22 46 46 H 1.07999 * 119.99783 * 179.97438 * 25 24 23 47 47 H 1.08996 * 109.47435 * 89.99875 * 27 26 17 48 48 H 1.08998 * 109.46917 * 210.00076 * 27 26 17 49 49 H 1.08998 * 109.47406 * 329.99759 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1891 1.3986 1.1860 6 1 3.6577 1.2248 2.1101 7 6 5.5656 1.5774 1.1999 8 7 6.1518 2.2488 0.2315 9 14 6.5860 0.8652 2.5932 10 1 7.0178 -0.5104 2.2374 11 1 7.7815 1.7171 2.8168 12 1 5.7695 0.8226 3.8329 13 6 4.2379 1.4898 -1.2669 14 6 4.4892 2.9257 -1.6488 15 8 4.0945 3.8216 -0.9328 16 7 5.1571 3.2144 -2.7833 17 6 5.4009 4.6104 -3.1548 18 1 5.5696 5.2017 -2.2548 19 6 6.6346 4.6903 -4.0562 20 6 7.8535 4.2661 -3.2781 21 6 8.5921 5.2060 -2.5840 22 6 9.7074 4.8163 -1.8664 23 6 10.0902 3.4880 -1.8513 24 6 9.3545 2.5488 -2.5497 25 6 8.2365 2.9379 -3.2634 26 6 4.2033 5.1502 -3.8934 27 6 4.0465 6.6359 -4.0907 28 8 3.3694 4.3920 -4.3272 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 7.1137 2.3741 0.2414 37 1 3.6492 1.0045 -2.0453 38 1 5.1903 0.9715 -1.1553 39 1 5.4763 2.4978 -3.3539 40 1 6.5021 4.0293 -4.9128 41 1 6.7643 5.7150 -4.4045 42 1 8.2955 6.2444 -2.5991 43 1 10.2823 5.5501 -1.3210 44 1 10.9640 3.1841 -1.2943 45 1 9.6537 1.5112 -2.5383 46 1 7.6620 2.2043 -3.8093 47 1 4.5264 6.9313 -5.0237 48 1 2.9866 6.8871 -4.1319 49 1 4.5129 7.1641 -3.2591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049981058.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:34 Heat of formation + Delta-G solvation = -26.631220 kcal Electronic energy + Delta-G solvation = -29956.753349 eV Core-core repulsion = 26077.715282 eV Total energy + Delta-G solvation = -3879.038066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.85535 -38.72018 -37.80653 -35.76668 -34.53476 -32.85009 -31.80786 -30.64847 -30.54038 -30.39784 -28.29754 -26.63135 -25.45153 -24.05336 -22.36836 -22.06004 -20.91152 -20.36964 -19.44434 -19.09288 -16.90213 -16.60109 -15.92300 -15.80560 -15.54878 -14.99692 -14.83204 -14.72440 -14.46669 -14.26301 -13.86960 -13.71189 -13.16553 -13.02570 -12.92058 -12.80049 -12.77053 -12.55406 -12.26090 -12.18083 -12.06123 -11.73947 -11.47085 -11.29815 -11.20096 -10.93752 -10.88823 -10.74304 -10.69316 -10.60590 -10.29646 -10.06169 -9.74516 -9.70961 -9.57124 -8.69027 -8.60203 -8.42201 -8.16687 -7.93079 -6.81478 -5.71500 -2.96614 1.61932 1.72285 2.24845 3.43422 3.51172 3.52173 3.95710 4.10562 4.19749 4.54487 4.70075 4.95224 5.02696 5.18354 5.24259 5.26240 5.33966 5.37781 5.42759 5.45678 5.53432 5.61963 5.64059 5.69412 5.76942 5.79506 5.87998 6.03154 6.08055 6.10086 6.28691 6.30089 6.30506 6.42497 6.47559 6.55813 6.65045 6.72695 6.79649 6.83196 6.86295 6.97826 7.15641 7.27357 7.29305 7.40890 7.82202 7.86662 8.34314 8.69989 9.25501 9.79371 9.96915 10.37396 11.38055 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008918 B = 0.005441 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.070157 B = 5144.997918 C = 7541.382272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.141 4.141 3 C 0.153 3.847 4 N -0.574 5.574 5 C -0.244 4.244 6 H 0.075 0.925 7 C 0.000 4.000 8 N -0.890 5.890 9 Si 0.896 3.104 10 H -0.291 1.291 11 H -0.296 1.296 12 H -0.283 1.283 13 C 0.166 3.834 14 C 0.539 3.461 15 O -0.535 6.535 16 N -0.729 5.729 17 C 0.111 3.889 18 H 0.111 0.889 19 C -0.077 4.077 20 C -0.072 4.072 21 C -0.114 4.114 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.110 4.110 25 C -0.095 4.095 26 C 0.344 3.656 27 C -0.204 4.204 28 O -0.451 6.451 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.043 0.957 35 H 0.034 0.966 36 H 0.253 0.747 37 H 0.034 0.966 38 H 0.102 0.898 39 H 0.387 0.613 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.117 0.883 46 H 0.116 0.884 47 H 0.091 0.909 48 H 0.081 0.919 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.897 4.323 -11.266 12.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.181 4.181 3 C 0.026 3.974 4 N -0.293 5.293 5 C -0.373 4.373 6 H 0.093 0.907 7 C -0.198 4.198 8 N -0.535 5.535 9 Si 0.727 3.273 10 H -0.218 1.218 11 H -0.222 1.222 12 H -0.209 1.209 13 C 0.035 3.965 14 C 0.326 3.674 15 O -0.409 6.409 16 N -0.383 5.383 17 C 0.003 3.997 18 H 0.128 0.872 19 C -0.115 4.115 20 C -0.072 4.072 21 C -0.132 4.132 22 C -0.137 4.137 23 C -0.140 4.140 24 C -0.128 4.128 25 C -0.113 4.113 26 C 0.217 3.783 27 C -0.261 4.261 28 O -0.323 6.323 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.120 0.880 39 H 0.219 0.781 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.135 0.865 46 H 0.134 0.866 47 H 0.110 0.890 48 H 0.100 0.900 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.290 4.596 -10.889 12.268 hybrid contribution 0.987 -0.405 0.738 1.297 sum 4.277 4.191 -10.150 11.785 Atomic orbital electron populations 1.21722 0.97312 1.00377 1.01085 1.22110 0.93702 1.00728 1.01599 1.20758 0.84442 0.93047 0.99138 1.43875 0.99623 1.83738 1.02027 1.19207 0.89683 1.42054 0.86321 0.90705 1.24638 0.97228 0.99869 0.98018 1.69884 1.09426 1.39744 1.34488 0.86355 0.80011 0.78857 0.82097 1.21821 1.22241 1.20857 1.20653 0.97970 0.91192 0.86673 1.22067 0.74298 0.93889 0.77163 1.90486 1.51558 1.48934 1.49874 1.46030 1.61595 1.04428 1.26271 1.21146 0.91824 0.88098 0.98600 0.87159 1.20706 0.91176 1.02606 0.97009 1.19518 0.95389 0.93805 0.98488 1.20902 0.95541 0.98984 0.97740 1.21006 0.97378 0.96113 0.99214 1.21050 1.00072 0.93463 0.99413 1.21029 0.95574 0.99084 0.97147 1.20866 0.96196 0.94970 0.99253 1.25350 0.86458 0.91211 0.75296 1.22292 1.04464 0.95467 1.03917 1.90357 1.41100 1.61435 1.39453 0.93738 0.93250 0.93417 0.93041 0.92134 0.93811 0.94735 0.93685 0.94808 0.88003 0.78062 0.90480 0.89756 0.86571 0.86683 0.86774 0.86533 0.86624 0.89032 0.90021 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.91 37.16 0.37 -1.86 16 2 C -0.14 -2.61 6.25 -26.73 -0.17 -2.78 16 3 C 0.15 3.38 5.67 -4.03 -0.02 3.36 16 4 N -0.57 -14.54 2.02 -174.61 -0.35 -14.89 16 5 C -0.24 -6.73 9.70 -15.06 -0.15 -6.87 16 6 H 0.08 2.07 7.94 -52.49 -0.42 1.65 16 7 C 0.00 0.00 4.90 -17.43 -0.09 -0.08 16 8 N -0.89 -24.49 8.96 55.49 0.50 -23.99 16 9 Si 0.90 21.97 29.62 -169.99 -5.04 16.93 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.30 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.17 3.92 5.42 -5.20 -0.03 3.89 16 14 C 0.54 12.73 5.85 -10.99 -0.06 12.67 16 15 O -0.53 -14.93 15.82 5.55 0.09 -14.85 16 16 N -0.73 -13.65 4.07 -54.93 -0.22 -13.88 16 17 C 0.11 1.78 2.28 -69.08 -0.16 1.62 16 18 H 0.11 2.05 7.57 -51.93 -0.39 1.66 16 19 C -0.08 -0.93 4.87 -27.88 -0.14 -1.06 16 20 C -0.07 -1.00 4.95 -104.63 -0.52 -1.52 16 21 C -0.11 -1.56 9.70 -39.59 -0.38 -1.94 16 22 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 23 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 24 C -0.11 -1.59 10.05 -39.58 -0.40 -1.98 16 25 C -0.09 -1.35 9.10 -39.58 -0.36 -1.71 16 26 C 0.34 5.34 6.51 -29.04 -0.19 5.15 16 27 C -0.20 -2.26 10.20 36.00 0.37 -1.89 16 28 O -0.45 -8.54 17.24 5.99 0.10 -8.44 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.04 1.00 8.06 -51.93 -0.42 0.58 16 35 H 0.03 0.76 8.06 -51.93 -0.42 0.34 16 36 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 37 H 0.03 0.72 8.07 -51.93 -0.42 0.30 16 38 H 0.10 2.54 6.30 -51.93 -0.33 2.21 16 39 H 0.39 6.40 7.83 -40.82 -0.32 6.08 16 40 H 0.08 0.84 8.09 -51.93 -0.42 0.42 16 41 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 42 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 43 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 44 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 45 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 46 H 0.12 1.48 7.57 -52.49 -0.40 1.09 16 47 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.08 0.86 8.12 -51.93 -0.42 0.43 16 LS Contribution 407.68 15.07 6.14 6.14 Total: -1.00 -34.25 407.68 -9.65 -43.90 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -8.15 Total: 8.24 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: -2.72 Total: 0.82 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.08 Total: -52.76 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.19 Total: -23.28 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.04 Total: 16.93 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.25 -9.65 -43.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049981058.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.271 kcal (2) G-P(sol) polarization free energy of solvation -34.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds