Wall clock time and date at job start Tue Mar 31 2020 16:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46665 * 2 1 4 4 N 1.46506 * 109.46790 * 179.97438 * 3 2 1 5 5 C 1.36939 * 119.99839 * 272.13953 * 4 3 2 6 6 H 1.08001 * 119.99964 * 8.56384 * 5 4 3 7 7 C 1.38810 * 119.99681 * 188.57215 * 5 4 3 8 8 N 1.31622 * 120.00150 * 24.80186 * 7 5 4 9 9 Si 1.86803 * 120.00032 * 204.80389 * 7 5 4 10 10 H 1.48504 * 109.46868 * 89.99582 * 9 7 5 11 11 H 1.48493 * 109.47205 * 210.00066 * 9 7 5 12 12 H 1.48503 * 109.46659 * 330.00255 * 9 7 5 13 13 C 1.46499 * 119.99825 * 92.13701 * 4 3 2 14 14 C 1.50695 * 109.46998 * 90.00049 * 13 4 3 15 15 O 1.21283 * 120.00200 * 359.97438 * 14 13 4 16 16 N 1.34777 * 119.99987 * 179.72414 * 14 13 4 17 17 C 1.46501 * 120.00193 * 179.97438 * 16 14 13 18 18 H 1.08999 * 109.46984 * 35.00117 * 17 16 14 19 19 C 1.53001 * 109.47266 * 154.99731 * 17 16 14 20 20 C 1.50696 * 109.47085 * 295.00100 * 19 17 16 21 21 C 1.38230 * 120.00248 * 269.72315 * 20 19 17 22 22 C 1.38232 * 120.00417 * 179.76958 * 21 20 19 23 23 C 1.38239 * 119.99917 * 0.50631 * 22 21 20 24 24 C 1.38243 * 119.99664 * 359.74665 * 23 22 21 25 25 C 1.38227 * 119.99789 * 0.02562 * 24 23 22 26 26 C 1.50704 * 109.47273 * 274.99991 * 17 16 14 27 27 C 1.50694 * 120.00048 * 164.99991 * 26 17 16 28 28 O 1.20765 * 119.99359 * 344.99917 * 26 17 16 29 29 H 1.09000 * 109.47032 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47158 * 299.99552 * 1 2 3 31 31 H 1.08997 * 109.47312 * 60.00458 * 1 2 3 32 32 H 1.09002 * 109.47610 * 240.00170 * 2 1 3 33 33 H 1.08997 * 109.47312 * 119.99542 * 2 1 3 34 34 H 1.09001 * 109.46967 * 60.00331 * 3 2 1 35 35 H 1.08997 * 109.46881 * 299.99806 * 3 2 1 36 36 H 0.97000 * 119.99878 * 179.97438 * 8 7 5 37 37 H 1.08995 * 109.47123 * 329.99564 * 13 4 3 38 38 H 1.09002 * 109.46561 * 209.99745 * 13 4 3 39 39 H 0.97005 * 119.99755 * 359.97438 * 16 14 13 40 40 H 1.09005 * 109.46858 * 55.00012 * 19 17 16 41 41 H 1.09003 * 109.46997 * 174.99971 * 19 17 16 42 42 H 1.08000 * 120.00023 * 0.02562 * 21 20 19 43 43 H 1.08005 * 120.00371 * 180.23498 * 22 21 20 44 44 H 1.07996 * 120.00501 * 179.72960 * 23 22 21 45 45 H 1.07992 * 119.99757 * 179.97438 * 24 23 22 46 46 H 1.07999 * 119.99783 * 179.97438 * 25 24 23 47 47 H 1.08996 * 109.47435 * 89.99875 * 27 26 17 48 48 H 1.08998 * 109.46917 * 210.00076 * 27 26 17 49 49 H 1.08998 * 109.47406 * 329.99759 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1891 1.3986 1.1860 6 1 3.6577 1.2248 2.1101 7 6 5.5656 1.5774 1.1999 8 7 6.1518 2.2488 0.2315 9 14 6.5860 0.8652 2.5932 10 1 7.0178 -0.5104 2.2374 11 1 7.7815 1.7171 2.8168 12 1 5.7695 0.8226 3.8329 13 6 4.2379 1.4898 -1.2669 14 6 4.4892 2.9257 -1.6488 15 8 4.0945 3.8216 -0.9328 16 7 5.1571 3.2144 -2.7833 17 6 5.4009 4.6104 -3.1548 18 1 5.5696 5.2017 -2.2548 19 6 6.6346 4.6903 -4.0562 20 6 7.8535 4.2661 -3.2781 21 6 8.5921 5.2060 -2.5840 22 6 9.7074 4.8163 -1.8664 23 6 10.0902 3.4880 -1.8513 24 6 9.3545 2.5488 -2.5497 25 6 8.2365 2.9379 -3.2634 26 6 4.2033 5.1502 -3.8934 27 6 4.0465 6.6359 -4.0907 28 8 3.3694 4.3920 -4.3272 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6765 1.9564 0.8900 35 1 1.6765 1.9564 -0.8900 36 1 7.1137 2.3741 0.2414 37 1 3.6492 1.0045 -2.0453 38 1 5.1903 0.9715 -1.1553 39 1 5.4763 2.4978 -3.3539 40 1 6.5021 4.0293 -4.9128 41 1 6.7643 5.7150 -4.4045 42 1 8.2955 6.2444 -2.5991 43 1 10.2823 5.5501 -1.3210 44 1 10.9640 3.1841 -1.2943 45 1 9.6537 1.5112 -2.5383 46 1 7.6620 2.2043 -3.8093 47 1 4.5264 6.9313 -5.0237 48 1 2.9866 6.8871 -4.1319 49 1 4.5129 7.1641 -3.2591 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049981058.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:53:32 Heat of formation + Delta-G solvation = -45.841682 kcal Electronic energy + Delta-G solvation = -29957.586377 eV Core-core repulsion = 26077.715282 eV Total energy + Delta-G solvation = -3879.871095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 2.22 seconds Orbital eigenvalues (eV) -41.18865 -39.83577 -39.52976 -37.51147 -35.97484 -34.60791 -33.23756 -32.35164 -31.70194 -31.55078 -29.62530 -28.18912 -27.27115 -25.26798 -23.82991 -23.39043 -22.00672 -21.97460 -21.14389 -20.46450 -18.77963 -17.79807 -17.45566 -17.24768 -16.98525 -16.81503 -16.00886 -15.94559 -15.81581 -15.61208 -15.58897 -15.22665 -14.65183 -14.58601 -14.45773 -14.17051 -13.89435 -13.84835 -13.61817 -13.27179 -13.24623 -13.10685 -13.02967 -12.80786 -12.61774 -12.56177 -12.42092 -12.18874 -12.05636 -11.97983 -11.93565 -11.76713 -11.73650 -11.38956 -10.97088 -10.65141 -10.17516 -9.69808 -9.58775 -9.38181 -8.79190 -7.79361 -5.05968 0.53812 0.64988 1.04220 1.46796 1.48823 1.55906 2.46187 2.52285 2.66315 2.97082 3.31790 3.33958 3.67423 3.90512 3.99970 4.09741 4.22270 4.22914 4.27101 4.32110 4.37442 4.38603 4.53612 4.61448 4.63058 4.68631 4.70027 4.73974 4.75509 4.86075 4.89668 4.91984 5.01848 5.14828 5.20397 5.25845 5.26287 5.27867 5.28304 5.41598 5.61612 5.66622 5.70911 5.72859 5.77815 5.92130 6.25398 6.31490 6.59969 7.00702 7.21905 7.86423 8.08696 8.33974 9.26260 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.008918 B = 0.005441 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.070157 B = 5144.997918 C = 7541.382272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.129 4.129 3 C 0.153 3.847 4 N -0.590 5.590 5 C -0.260 4.260 6 H 0.065 0.935 7 C -0.041 4.041 8 N -0.896 5.896 9 Si 0.954 3.046 10 H -0.284 1.284 11 H -0.303 1.303 12 H -0.282 1.282 13 C 0.165 3.835 14 C 0.541 3.459 15 O -0.585 6.585 16 N -0.718 5.718 17 C 0.108 3.892 18 H 0.085 0.915 19 C -0.066 4.066 20 C -0.083 4.083 21 C -0.124 4.124 22 C -0.132 4.132 23 C -0.137 4.137 24 C -0.129 4.129 25 C -0.110 4.110 26 C 0.344 3.656 27 C -0.197 4.197 28 O -0.492 6.492 29 H 0.067 0.933 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.028 0.972 35 H 0.030 0.970 36 H 0.246 0.754 37 H 0.055 0.945 38 H 0.087 0.913 39 H 0.398 0.602 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.127 0.873 45 H 0.124 0.876 46 H 0.124 0.876 47 H 0.131 0.869 48 H 0.080 0.920 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.053 4.824 -12.506 14.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.169 4.169 3 C 0.027 3.973 4 N -0.309 5.309 5 C -0.390 4.390 6 H 0.083 0.917 7 C -0.237 4.237 8 N -0.542 5.542 9 Si 0.784 3.216 10 H -0.211 1.211 11 H -0.230 1.230 12 H -0.208 1.208 13 C 0.035 3.965 14 C 0.328 3.672 15 O -0.463 6.463 16 N -0.371 5.371 17 C 0.001 3.999 18 H 0.103 0.897 19 C -0.104 4.104 20 C -0.083 4.083 21 C -0.142 4.142 22 C -0.150 4.150 23 C -0.155 4.155 24 C -0.147 4.147 25 C -0.128 4.128 26 C 0.220 3.780 27 C -0.254 4.254 28 O -0.368 6.368 29 H 0.086 0.914 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.046 0.954 35 H 0.048 0.952 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.105 0.895 39 H 0.232 0.768 40 H 0.111 0.889 41 H 0.140 0.860 42 H 0.155 0.845 43 H 0.151 0.849 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.142 0.858 47 H 0.149 0.851 48 H 0.098 0.902 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.458 5.089 -12.177 13.643 hybrid contribution 0.962 -0.525 1.105 1.556 sum 4.421 4.564 -11.072 12.765 Atomic orbital electron populations 1.21663 0.94384 1.02101 1.01619 1.21924 0.96151 0.97653 1.01130 1.20862 0.83097 0.95252 0.98092 1.44051 1.00797 1.84187 1.01904 1.19320 0.90247 1.42429 0.86970 0.91688 1.25231 0.97914 1.00262 1.00299 1.70030 1.08789 1.39931 1.35457 0.85470 0.78146 0.78066 0.79923 1.21123 1.23047 1.20796 1.20630 0.97489 0.91608 0.86779 1.21888 0.74208 0.93268 0.77808 1.90452 1.53898 1.50050 1.51920 1.45749 1.59902 1.06495 1.24964 1.21342 0.94311 0.85661 0.98561 0.89682 1.20734 0.88196 1.05321 0.96138 1.19761 0.96033 0.93714 0.98790 1.21265 0.95424 1.00181 0.97350 1.21342 0.97805 0.96482 0.99410 1.21337 1.00682 0.93833 0.99625 1.21278 0.96034 0.99769 0.97596 1.21114 0.96465 0.95680 0.99590 1.25782 0.85108 0.93238 0.73836 1.22306 1.05051 0.91627 1.06403 1.90353 1.42069 1.62829 1.41505 0.91388 0.92988 0.92672 0.92759 0.93285 0.95372 0.95194 0.94462 0.92743 0.89532 0.76796 0.88931 0.86018 0.84453 0.84915 0.85479 0.85786 0.85840 0.85084 0.90162 0.88419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.91 71.98 0.71 -3.26 16 2 C -0.13 -4.69 6.25 30.60 0.19 -4.50 16 3 C 0.15 6.87 5.67 86.38 0.49 7.36 16 4 N -0.59 -30.49 2.02 -706.33 -1.43 -31.92 16 5 C -0.26 -14.66 9.70 84.03 0.82 -13.85 16 6 H 0.07 3.70 7.94 -2.91 -0.02 3.67 16 7 C -0.04 -2.26 4.90 84.86 0.42 -1.85 16 8 N -0.90 -50.14 8.96 21.65 0.19 -49.95 16 9 Si 0.95 45.84 29.62 68.60 2.03 47.87 16 10 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.30 -14.86 7.11 99.48 0.71 -14.15 16 12 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 13 C 0.17 7.94 5.42 85.63 0.46 8.40 16 14 C 0.54 26.00 5.85 87.66 0.51 26.52 16 15 O -0.59 -33.53 15.82 -3.04 -0.05 -33.57 16 16 N -0.72 -26.87 4.07 -446.09 -1.81 -28.68 16 17 C 0.11 3.35 2.28 44.25 0.10 3.46 16 18 H 0.09 3.15 7.57 -2.39 -0.02 3.13 16 19 C -0.07 -1.44 4.87 29.85 0.15 -1.29 16 20 C -0.08 -2.19 4.95 -19.87 -0.10 -2.28 16 21 C -0.12 -3.23 9.70 22.27 0.22 -3.01 16 22 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 23 C -0.14 -3.80 10.05 22.27 0.22 -3.58 16 24 C -0.13 -3.69 10.05 22.27 0.22 -3.46 16 25 C -0.11 -3.09 9.10 22.27 0.20 -2.89 16 26 C 0.34 10.20 6.51 29.10 0.19 10.39 16 27 C -0.20 -3.80 10.20 71.23 0.73 -3.08 16 28 O -0.49 -18.32 17.24 -1.46 -0.03 -18.34 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.03 1.32 8.06 -2.39 -0.02 1.30 16 35 H 0.03 1.34 8.06 -2.39 -0.02 1.32 16 36 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 37 H 0.05 2.33 8.07 -2.39 -0.02 2.31 16 38 H 0.09 4.40 6.30 -2.39 -0.02 4.39 16 39 H 0.40 13.05 7.83 -92.70 -0.73 12.32 16 40 H 0.09 1.75 8.09 -2.38 -0.02 1.73 16 41 H 0.12 1.75 8.04 -2.39 -0.02 1.73 16 42 H 0.14 2.85 8.06 -2.91 -0.02 2.83 16 43 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 44 H 0.13 3.05 8.06 -2.91 -0.02 3.02 16 45 H 0.12 3.20 8.06 -2.91 -0.02 3.18 16 46 H 0.12 3.11 7.57 -2.91 -0.02 3.09 16 47 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.10 1.68 8.12 -2.39 -0.02 1.66 16 Total: -1.00 -76.21 407.68 4.87 -71.34 By element: Atomic # 1 Polarization: 33.30 SS G_CDS: 0.20 Total: 33.50 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: 5.76 Total: 9.76 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -3.05 Total: -110.56 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: -0.07 Total: -51.92 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -76.21 4.87 -71.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049981058.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.500 kcal (2) G-P(sol) polarization free energy of solvation -76.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.22 seconds