Wall clock time and date at job start Tue Mar 31 2020 17:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47526 * 2 1 4 4 N 1.46498 * 109.46957 * 180.02562 * 3 2 1 5 5 C 1.34785 * 119.99825 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99788 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.99869 * 179.97438 * 5 4 3 8 8 N 1.46503 * 109.46888 * 179.97438 * 7 5 4 9 9 C 1.46506 * 119.99980 * 73.50316 * 8 7 5 10 10 C 1.52993 * 109.47094 * 94.24783 * 9 8 7 11 11 C 1.52994 * 109.47016 * 179.97438 * 10 9 8 12 12 C 1.34775 * 120.00022 * 253.50126 * 8 7 5 13 13 O 1.21542 * 120.00117 * 183.23247 * 12 8 7 14 14 C 1.47886 * 119.99807 * 3.23230 * 12 8 7 15 15 C 1.39914 * 120.02721 * 28.27040 * 14 12 8 16 16 C 1.38328 * 120.36095 * 179.74495 * 15 14 12 17 17 C 1.37756 * 120.40944 * 0.54923 * 16 15 14 18 18 C 1.40741 * 120.03932 * 359.71074 * 17 16 15 19 19 C 1.41443 * 120.17817 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00228 * 25.37735 * 19 18 17 21 21 C 1.39938 * 119.99734 * 205.38127 * 19 18 17 22 22 N 1.30821 * 120.00172 * 13.63521 * 21 19 18 23 23 Si 1.86797 * 119.99846 * 193.63356 * 21 19 18 24 24 H 1.48503 * 109.47275 * 89.99794 * 23 21 19 25 25 H 1.48503 * 109.47247 * 209.99877 * 23 21 19 26 26 H 1.48504 * 109.47432 * 329.99835 * 23 21 19 27 27 C 1.38999 * 120.02330 * 208.54477 * 14 12 8 28 28 H 1.08999 * 109.47150 * 60.00294 * 1 2 3 29 29 H 1.08992 * 109.47754 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47218 * 300.00454 * 1 2 3 31 31 H 1.09003 * 109.46701 * 239.99508 * 2 1 3 32 32 H 1.09010 * 109.47042 * 120.00160 * 2 1 3 33 33 H 1.08987 * 109.47396 * 59.99610 * 3 2 1 34 34 H 1.09007 * 109.46778 * 299.99716 * 3 2 1 35 35 H 0.97001 * 120.00191 * 359.97438 * 4 3 2 36 36 H 1.08999 * 109.47332 * 299.99739 * 7 5 4 37 37 H 1.09001 * 109.47560 * 59.99902 * 7 5 4 38 38 H 1.08996 * 109.46811 * 214.24946 * 9 8 7 39 39 H 1.09002 * 109.46778 * 334.24922 * 9 8 7 40 40 H 1.08998 * 109.47383 * 300.00563 * 10 9 8 41 41 H 1.09002 * 109.47195 * 60.00394 * 10 9 8 42 42 H 1.09004 * 109.47314 * 300.00422 * 11 10 9 43 43 H 1.08999 * 109.47336 * 60.00217 * 11 10 9 44 44 H 1.09001 * 109.47684 * 180.02562 * 11 10 9 45 45 H 1.08002 * 119.82463 * 359.97438 * 15 14 12 46 46 H 1.08005 * 119.80023 * 180.27932 * 16 15 14 47 47 H 1.08001 * 119.97907 * 179.72038 * 17 16 15 48 48 H 0.97002 * 120.00150 * 180.02562 * 22 21 19 49 49 H 1.08000 * 120.20253 * 359.95282 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.1790 2.6095 -0.0012 6 8 3.5727 3.6598 -0.0018 7 6 5.6860 2.6094 -0.0013 8 7 6.1744 3.9906 -0.0027 9 6 6.0790 4.8025 1.2131 10 6 7.3913 4.7078 1.9939 11 6 7.2918 5.5562 3.2632 12 6 6.7115 4.5143 -1.1223 13 8 7.1701 5.6398 -1.1074 14 6 6.7429 3.7196 -2.3690 15 6 5.7671 2.7445 -2.6025 16 6 5.7867 2.0007 -3.7686 17 6 6.7734 2.2034 -4.7083 18 6 7.7666 3.1760 -4.4885 19 6 8.7808 3.3869 -5.4517 20 1 8.6015 3.1399 -6.4876 21 6 10.0165 3.9156 -5.0622 22 7 10.3360 3.9663 -3.7946 23 14 11.2098 4.5489 -6.3522 24 1 10.9517 5.9901 -6.6004 25 1 12.6024 4.3716 -5.8679 26 1 11.0242 3.7883 -7.6142 27 6 7.7452 3.9368 -3.3073 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8901 33 1 1.6768 1.9563 0.8898 34 1 1.6767 1.9563 -0.8901 35 1 3.9900 0.6022 -0.0006 36 1 6.0493 2.0960 0.8889 37 1 6.0493 2.0950 -0.8910 38 1 5.8914 5.8415 0.9423 39 1 5.2606 4.4349 1.8321 40 1 7.5789 3.6688 2.2646 41 1 8.2097 5.0754 1.3749 42 1 7.1045 6.5952 2.9920 43 1 6.4734 5.1891 3.8824 44 1 8.2269 5.4892 3.8193 45 1 4.9920 2.5740 -1.8699 46 1 5.0264 1.2534 -3.9416 47 1 6.7847 1.6156 -5.6143 48 1 11.1925 4.3331 -3.5246 49 1 8.5027 4.6858 -3.1296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055827676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:33 Heat of formation + Delta-G solvation = -49.223167 kcal Electronic energy + Delta-G solvation = -29079.822285 eV Core-core repulsion = 25199.804558 eV Total energy + Delta-G solvation = -3880.017727 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.38439 -38.85933 -37.17711 -36.00560 -35.28141 -33.98668 -33.10500 -32.67535 -30.20596 -29.50468 -28.46550 -26.31874 -25.46461 -25.27234 -22.34961 -21.88762 -21.15983 -21.04011 -20.59014 -18.82487 -17.64592 -17.01480 -16.53544 -16.16736 -15.76938 -15.61826 -15.21596 -15.05582 -14.49467 -14.45061 -14.16458 -13.63148 -13.55785 -13.22690 -13.08685 -12.98867 -12.83469 -12.64485 -12.45316 -12.29951 -11.98369 -11.83452 -11.71715 -11.46438 -11.40766 -11.24944 -11.16373 -11.13709 -11.09297 -10.55090 -10.48396 -10.43601 -10.07179 -9.94832 -9.70355 -9.27108 -9.10978 -8.95689 -8.28543 -7.64207 -7.52093 -6.81476 -4.46627 2.21155 2.67014 2.79604 3.01341 3.05951 3.08903 3.13044 3.50770 3.82608 3.89448 4.56407 4.58403 4.70212 4.83454 4.98148 5.06342 5.13763 5.29833 5.35967 5.37020 5.38201 5.44275 5.50557 5.53174 5.68409 5.72903 5.73804 5.85995 5.86773 5.93711 5.97901 6.04362 6.11948 6.21884 6.33812 6.40196 6.45798 6.65513 6.88726 6.94847 7.01932 7.18398 7.34691 7.43783 7.62857 7.72945 7.85472 7.97588 8.13425 8.27933 8.47017 8.76881 8.79246 8.89681 10.11815 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010674 B = 0.003639 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.605908 B = 7692.038824 C = 9940.142537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.136 4.136 3 C 0.119 3.881 4 N -0.735 5.735 5 C 0.497 3.503 6 O -0.527 6.527 7 C 0.064 3.936 8 N -0.596 5.596 9 C 0.127 3.873 10 C -0.142 4.142 11 C -0.146 4.146 12 C 0.572 3.428 13 O -0.539 6.539 14 C -0.124 4.124 15 C -0.238 4.238 16 C -0.095 4.095 17 C -0.211 4.211 18 C 0.101 3.899 19 C -0.455 4.455 20 H 0.081 0.919 21 C 0.072 3.928 22 N -0.790 5.790 23 Si 0.914 3.086 24 H -0.266 1.266 25 H -0.277 1.277 26 H -0.262 1.262 27 C -0.092 4.092 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.401 0.599 36 H 0.091 0.909 37 H 0.153 0.847 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.055 0.945 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.102 0.898 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.284 0.716 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.022 -8.346 10.892 16.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.174 4.174 3 C -0.005 4.005 4 N -0.389 5.389 5 C 0.283 3.717 6 O -0.402 6.402 7 C -0.063 4.063 8 N -0.328 5.328 9 C 0.004 3.996 10 C -0.181 4.181 11 C -0.204 4.204 12 C 0.364 3.636 13 O -0.416 6.416 14 C -0.128 4.128 15 C -0.257 4.257 16 C -0.113 4.113 17 C -0.231 4.231 18 C 0.098 3.902 19 C -0.485 4.485 20 H 0.099 0.901 21 C -0.147 4.147 22 N -0.415 5.415 23 Si 0.738 3.262 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.186 1.186 27 C -0.112 4.112 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.235 0.765 36 H 0.109 0.891 37 H 0.170 0.830 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.119 0.881 46 H 0.110 0.890 47 H 0.114 0.886 48 H 0.095 0.905 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.002 -6.859 11.061 16.414 hybrid contribution 0.635 -0.304 -0.440 0.830 sum -9.367 -7.163 10.621 15.870 Atomic orbital electron populations 1.21676 0.94700 1.02043 1.02318 1.21739 0.96872 0.95958 1.02812 1.21359 0.79825 0.96964 1.02339 1.46033 1.07207 1.08831 1.76833 1.21356 0.91053 0.83720 0.75593 1.90715 1.70194 1.31236 1.48097 1.22306 0.90122 0.86428 1.07444 1.47353 1.61399 1.12302 1.11709 1.21348 0.96497 0.96744 0.85000 1.21917 0.99190 1.00136 0.96815 1.21669 1.01326 1.00245 0.97142 1.18886 0.75609 0.86077 0.83042 1.90683 1.46428 1.19546 1.84911 1.19482 0.99480 0.99088 0.94709 1.20820 1.01819 1.03040 1.00046 1.20435 0.97708 0.98941 0.94265 1.21114 0.99938 1.01820 1.00224 1.17612 0.91505 0.88980 0.92089 1.19626 0.96419 1.36571 0.95841 0.90063 1.25962 0.99245 0.93332 0.96124 1.69751 1.22142 1.32883 1.16692 0.86219 0.78756 0.80154 0.81087 1.19136 1.20192 1.18579 1.21671 0.96890 0.99271 0.93396 0.92288 0.92251 0.92485 0.91067 0.91374 0.91782 0.91505 0.76481 0.89068 0.82998 0.90341 0.91198 0.92228 0.91021 0.92546 0.93010 0.92708 0.88062 0.88954 0.88578 0.90506 0.84683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.58 16 2 C -0.14 -0.93 6.05 -26.73 -0.16 -1.10 16 3 C 0.12 1.18 5.67 -4.04 -0.02 1.16 16 4 N -0.73 -7.90 5.56 -60.30 -0.34 -8.23 16 5 C 0.50 7.36 5.64 -10.98 -0.06 7.30 16 6 O -0.53 -9.98 15.74 5.56 0.09 -9.89 16 7 C 0.06 0.95 5.38 -5.19 -0.03 0.92 16 8 N -0.60 -10.98 2.15 -176.16 -0.38 -11.36 16 9 C 0.13 2.06 4.85 -4.04 -0.02 2.04 16 10 C -0.14 -2.02 6.23 -26.74 -0.17 -2.19 16 11 C -0.15 -1.68 9.91 37.15 0.37 -1.31 16 12 C 0.57 13.20 7.43 -12.31 -0.09 13.11 16 13 O -0.54 -13.97 16.35 5.33 0.09 -13.88 16 14 C -0.12 -2.98 5.48 -105.04 -0.58 -3.55 16 15 C -0.24 -5.01 7.42 -38.92 -0.29 -5.30 16 16 C -0.10 -1.98 10.01 -39.72 -0.40 -2.38 16 17 C -0.21 -4.90 9.78 -38.81 -0.38 -5.28 16 18 C 0.10 2.62 5.58 -106.87 -0.60 2.03 16 19 C -0.46 -11.80 9.07 -37.73 -0.34 -12.14 16 20 H 0.08 2.00 7.88 -52.49 -0.41 1.59 16 21 C 0.07 1.78 5.22 -17.35 -0.09 1.69 16 22 N -0.79 -20.42 10.77 55.55 0.60 -19.82 16 23 Si 0.91 18.65 29.58 -169.99 -5.03 13.62 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.28 -5.52 7.11 56.52 0.40 -5.11 16 26 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 27 C -0.09 -2.45 8.23 -38.44 -0.32 -2.76 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 33 H 0.06 0.67 8.14 -51.94 -0.42 0.25 16 34 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 35 H 0.40 3.12 8.47 -40.82 -0.35 2.78 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.15 2.40 4.21 -51.93 -0.22 2.19 16 38 H 0.08 1.43 7.60 -51.93 -0.39 1.03 16 39 H 0.07 1.02 7.58 -51.93 -0.39 0.63 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.10 1.89 3.47 -52.49 -0.18 1.71 16 46 H 0.09 1.62 8.06 -52.48 -0.42 1.20 16 47 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 48 H 0.28 6.74 8.30 -40.82 -0.34 6.41 16 49 H 0.14 3.88 5.90 -52.49 -0.31 3.57 16 LS Contribution 398.70 15.07 6.01 6.01 Total: -1.00 -32.01 398.70 -9.50 -41.50 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -7.73 Total: 10.41 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -2.80 Total: -8.36 kcal Atomic # 7 Polarization: -39.30 SS G_CDS: -0.12 Total: -39.41 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: 0.17 Total: -23.77 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.01 -9.50 -41.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055827676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.719 kcal (2) G-P(sol) polarization free energy of solvation -32.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds