Wall clock time and date at job start Tue Mar 31 2020 17:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47526 * 2 1 4 4 N 1.46498 * 109.46957 * 180.02562 * 3 2 1 5 5 C 1.34785 * 119.99825 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99788 * 359.97438 * 5 4 3 7 7 C 1.50695 * 119.99869 * 179.97438 * 5 4 3 8 8 N 1.46503 * 109.46888 * 179.97438 * 7 5 4 9 9 C 1.46506 * 119.99980 * 73.50316 * 8 7 5 10 10 C 1.52993 * 109.47094 * 94.24783 * 9 8 7 11 11 C 1.52994 * 109.47016 * 179.97438 * 10 9 8 12 12 C 1.34775 * 120.00022 * 253.50126 * 8 7 5 13 13 O 1.21542 * 120.00117 * 183.23247 * 12 8 7 14 14 C 1.47886 * 119.99807 * 3.23230 * 12 8 7 15 15 C 1.39914 * 120.02721 * 28.27040 * 14 12 8 16 16 C 1.38328 * 120.36095 * 179.74495 * 15 14 12 17 17 C 1.37756 * 120.40944 * 0.54923 * 16 15 14 18 18 C 1.40741 * 120.03932 * 359.71074 * 17 16 15 19 19 C 1.41443 * 120.17817 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00228 * 25.37735 * 19 18 17 21 21 C 1.39938 * 119.99734 * 205.38127 * 19 18 17 22 22 N 1.30821 * 120.00172 * 13.63521 * 21 19 18 23 23 Si 1.86797 * 119.99846 * 193.63356 * 21 19 18 24 24 H 1.48503 * 109.47275 * 89.99794 * 23 21 19 25 25 H 1.48503 * 109.47247 * 209.99877 * 23 21 19 26 26 H 1.48504 * 109.47432 * 329.99835 * 23 21 19 27 27 C 1.38999 * 120.02330 * 208.54477 * 14 12 8 28 28 H 1.08999 * 109.47150 * 60.00294 * 1 2 3 29 29 H 1.08992 * 109.47754 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47218 * 300.00454 * 1 2 3 31 31 H 1.09003 * 109.46701 * 239.99508 * 2 1 3 32 32 H 1.09010 * 109.47042 * 120.00160 * 2 1 3 33 33 H 1.08987 * 109.47396 * 59.99610 * 3 2 1 34 34 H 1.09007 * 109.46778 * 299.99716 * 3 2 1 35 35 H 0.97001 * 120.00191 * 359.97438 * 4 3 2 36 36 H 1.08999 * 109.47332 * 299.99739 * 7 5 4 37 37 H 1.09001 * 109.47560 * 59.99902 * 7 5 4 38 38 H 1.08996 * 109.46811 * 214.24946 * 9 8 7 39 39 H 1.09002 * 109.46778 * 334.24922 * 9 8 7 40 40 H 1.08998 * 109.47383 * 300.00563 * 10 9 8 41 41 H 1.09002 * 109.47195 * 60.00394 * 10 9 8 42 42 H 1.09004 * 109.47314 * 300.00422 * 11 10 9 43 43 H 1.08999 * 109.47336 * 60.00217 * 11 10 9 44 44 H 1.09001 * 109.47684 * 180.02562 * 11 10 9 45 45 H 1.08002 * 119.82463 * 359.97438 * 15 14 12 46 46 H 1.08005 * 119.80023 * 180.27932 * 16 15 14 47 47 H 1.08001 * 119.97907 * 179.72038 * 17 16 15 48 48 H 0.97002 * 120.00150 * 180.02562 * 22 21 19 49 49 H 1.08000 * 120.20253 * 359.95282 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5050 1.4423 -0.0006 5 6 4.1790 2.6095 -0.0012 6 8 3.5727 3.6598 -0.0018 7 6 5.6860 2.6094 -0.0013 8 7 6.1744 3.9906 -0.0027 9 6 6.0790 4.8025 1.2131 10 6 7.3913 4.7078 1.9939 11 6 7.2918 5.5562 3.2632 12 6 6.7115 4.5143 -1.1223 13 8 7.1701 5.6398 -1.1074 14 6 6.7429 3.7196 -2.3690 15 6 5.7671 2.7445 -2.6025 16 6 5.7867 2.0007 -3.7686 17 6 6.7734 2.2034 -4.7083 18 6 7.7666 3.1760 -4.4885 19 6 8.7808 3.3869 -5.4517 20 1 8.6015 3.1399 -6.4876 21 6 10.0165 3.9156 -5.0622 22 7 10.3360 3.9663 -3.7946 23 14 11.2098 4.5489 -6.3522 24 1 10.9517 5.9901 -6.6004 25 1 12.6024 4.3716 -5.8679 26 1 11.0242 3.7883 -7.6142 27 6 7.7452 3.9368 -3.3073 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0275 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8901 33 1 1.6768 1.9563 0.8898 34 1 1.6767 1.9563 -0.8901 35 1 3.9900 0.6022 -0.0006 36 1 6.0493 2.0960 0.8889 37 1 6.0493 2.0950 -0.8910 38 1 5.8914 5.8415 0.9423 39 1 5.2606 4.4349 1.8321 40 1 7.5789 3.6688 2.2646 41 1 8.2097 5.0754 1.3749 42 1 7.1045 6.5952 2.9920 43 1 6.4734 5.1891 3.8824 44 1 8.2269 5.4892 3.8193 45 1 4.9920 2.5740 -1.8699 46 1 5.0264 1.2534 -3.9416 47 1 6.7847 1.6156 -5.6143 48 1 11.1925 4.3331 -3.5246 49 1 8.5027 4.6858 -3.1296 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055827676.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:06:32 Heat of formation + Delta-G solvation = -68.646729 kcal Electronic energy + Delta-G solvation = -29080.664554 eV Core-core repulsion = 25199.804558 eV Total energy + Delta-G solvation = -3880.859996 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 332.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.83411 -40.29125 -38.96407 -37.19495 -36.54286 -35.73424 -34.46646 -33.52688 -31.95309 -31.33110 -29.67310 -27.67041 -27.00101 -26.48731 -23.87023 -22.91818 -22.55445 -22.43004 -21.83326 -20.40944 -19.36718 -18.17715 -17.96517 -17.75628 -17.06841 -16.97032 -16.58910 -16.39773 -15.94269 -15.74663 -15.47635 -15.14580 -15.02106 -14.63095 -14.51841 -14.29999 -14.18294 -13.78666 -13.72400 -13.42145 -13.06404 -13.05780 -12.93127 -12.91522 -12.83747 -12.79076 -12.34414 -12.28325 -12.08189 -11.99331 -11.93088 -11.70714 -11.66510 -11.48644 -11.25866 -11.10744 -10.73967 -10.10730 -9.79433 -9.45395 -9.37836 -8.65634 -6.41039 0.37723 0.95741 1.36580 1.44519 1.50448 1.53930 1.78290 1.93375 2.18227 2.36223 2.73769 3.56389 3.66098 3.80422 3.97876 3.98943 4.02599 4.11756 4.16303 4.34609 4.36669 4.40082 4.42183 4.51511 4.52352 4.66588 4.70381 4.79997 4.86884 4.90591 4.91178 5.05506 5.10156 5.14592 5.19580 5.20607 5.28226 5.29424 5.31674 5.35874 5.47189 5.50994 5.55355 5.79528 5.90235 6.02730 6.19557 6.27792 6.53041 6.59206 6.86032 6.91687 7.13911 7.22705 8.29519 Molecular weight = 332.19amu Principal moments of inertia in cm(-1) A = 0.010674 B = 0.003639 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.605908 B = 7692.038824 C = 9940.142537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C 0.117 3.883 4 N -0.713 5.713 5 C 0.498 3.502 6 O -0.573 6.573 7 C 0.057 3.943 8 N -0.588 5.588 9 C 0.126 3.874 10 C -0.135 4.135 11 C -0.141 4.141 12 C 0.561 3.439 13 O -0.584 6.584 14 C -0.135 4.135 15 C -0.218 4.218 16 C -0.088 4.088 17 C -0.213 4.213 18 C 0.071 3.929 19 C -0.491 4.491 20 H 0.085 0.915 21 C 0.028 3.972 22 N -0.826 5.826 23 Si 0.984 3.016 24 H -0.270 1.270 25 H -0.268 1.268 26 H -0.250 1.250 27 C -0.128 4.128 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.419 0.581 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.050 0.950 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.034 0.966 42 H 0.046 0.954 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.130 0.870 46 H 0.140 0.860 47 H 0.113 0.887 48 H 0.286 0.714 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.620 -11.288 11.993 20.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.007 4.007 4 N -0.367 5.367 5 C 0.284 3.716 6 O -0.452 6.452 7 C -0.068 4.068 8 N -0.318 5.318 9 C 0.005 3.995 10 C -0.173 4.173 11 C -0.198 4.198 12 C 0.353 3.647 13 O -0.465 6.465 14 C -0.138 4.138 15 C -0.237 4.237 16 C -0.106 4.106 17 C -0.232 4.232 18 C 0.069 3.931 19 C -0.520 4.520 20 H 0.103 0.897 21 C -0.187 4.187 22 N -0.452 5.452 23 Si 0.804 3.196 24 H -0.195 1.195 25 H -0.192 1.192 26 H -0.173 1.173 27 C -0.148 4.148 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.257 0.743 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.069 0.931 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.053 0.947 42 H 0.066 0.934 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.148 0.852 46 H 0.157 0.843 47 H 0.131 0.869 48 H 0.097 0.903 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.638 -9.901 12.193 19.549 hybrid contribution 0.927 0.497 -0.652 1.237 sum -10.712 -9.404 11.541 18.340 Atomic orbital electron populations 1.21694 0.94354 1.02787 1.02047 1.21694 0.97051 0.93707 1.03947 1.21465 0.78903 0.99006 1.01284 1.45892 1.07766 1.08419 1.74600 1.21245 0.90796 0.84116 0.75468 1.90719 1.70845 1.33053 1.50576 1.22529 0.90526 0.84398 1.09381 1.47366 1.59708 1.13801 1.10881 1.21497 0.98475 0.95160 0.84415 1.21852 0.96544 1.01804 0.97148 1.21643 1.02993 0.99211 0.95990 1.18947 0.75983 0.85592 0.84176 1.90644 1.48703 1.21424 1.85765 1.19723 0.99530 0.99812 0.94764 1.21171 1.00909 1.01069 1.00599 1.20886 0.97668 0.99139 0.92936 1.21414 0.99504 1.00960 1.01361 1.17944 0.92846 0.90041 0.92257 1.19901 0.97376 1.38616 0.96115 0.89665 1.26840 1.00774 0.92992 0.98046 1.69853 1.22737 1.34007 1.18611 0.85169 0.76611 0.79098 0.78676 1.19470 1.19238 1.17292 1.21447 0.97930 1.00132 0.95317 0.92969 0.90980 0.92468 0.90366 0.89737 0.92272 0.93296 0.74315 0.84335 0.83789 0.93117 0.88693 0.90128 0.94686 0.93438 0.90768 0.91312 0.85218 0.84270 0.86909 0.90310 0.88186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.77 16 2 C -0.13 -1.28 6.05 30.59 0.18 -1.09 16 3 C 0.12 2.00 5.67 86.38 0.49 2.49 16 4 N -0.71 -12.74 5.56 -463.07 -2.57 -15.31 16 5 C 0.50 13.42 5.64 87.65 0.49 13.91 16 6 O -0.57 -20.90 15.74 -3.03 -0.05 -20.95 16 7 C 0.06 1.55 5.38 85.63 0.46 2.01 16 8 N -0.59 -21.53 2.15 -829.53 -1.79 -23.31 16 9 C 0.13 4.08 4.85 86.38 0.42 4.49 16 10 C -0.13 -3.77 6.23 30.59 0.19 -3.58 16 11 C -0.14 -3.03 9.91 71.98 0.71 -2.32 16 12 C 0.56 26.94 7.43 86.80 0.65 27.59 16 13 O -0.58 -32.47 16.35 -3.85 -0.06 -32.53 16 14 C -0.14 -6.65 5.48 -20.13 -0.11 -6.76 16 15 C -0.22 -8.90 7.42 22.70 0.17 -8.73 16 16 C -0.09 -3.45 10.01 22.18 0.22 -3.23 16 17 C -0.21 -9.71 9.78 22.77 0.22 -9.49 16 18 C 0.07 3.85 5.58 -21.32 -0.12 3.73 16 19 C -0.49 -26.39 9.07 23.47 0.21 -26.18 16 20 H 0.09 4.32 7.88 -2.91 -0.02 4.29 16 21 C 0.03 1.45 5.22 85.26 0.45 1.89 16 22 N -0.83 -45.22 10.77 21.82 0.24 -44.98 16 23 Si 0.98 39.39 29.58 68.60 2.03 41.42 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 25 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 26 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 27 C -0.13 -7.16 8.23 23.01 0.19 -6.97 16 28 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.62 8.14 -2.38 -0.02 0.61 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.42 4.56 8.47 -92.71 -0.79 3.77 16 36 H 0.14 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.15 4.18 4.21 -2.39 -0.01 4.17 16 38 H 0.05 1.92 7.60 -2.39 -0.02 1.90 16 39 H 0.09 2.59 7.58 -2.39 -0.02 2.57 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.13 4.52 3.47 -2.91 -0.01 4.51 16 46 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 47 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 48 H 0.29 14.42 8.30 -92.71 -0.77 13.65 16 49 H 0.10 6.26 5.90 -2.91 -0.02 6.24 16 Total: -1.00 -76.32 398.70 3.51 -72.81 By element: Atomic # 1 Polarization: 35.69 SS G_CDS: 0.17 Total: 35.86 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: 5.54 Total: -13.01 kcal Atomic # 7 Polarization: -79.48 SS G_CDS: -4.12 Total: -83.61 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -0.11 Total: -53.48 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -76.32 3.51 -72.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055827676.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.165 kcal (2) G-P(sol) polarization free energy of solvation -76.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds